# List of top-scoring protein chains for T0269.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qmvA 197 7.22e-33 1qq2A c.47.1.10 33066 1qq2A 199 8.95e-33 1qq2A c.47.1.10 33064 1e2yA 188 1.61e-29 1qq2A c.47.1.10 59173 1prxA 224 2.84e-29 1prxA c.47.1.10 33076 1kygA 186 8.41e-25 c.47.1.10 68881 1n8jA 186 7.66e-24 c.47.1.10 85401 1oc3A 172 1.05e-17 c.47.1.10 -7491 1nm3A 241 1.07e-17 c.47.1.1 85866 c.47.1.10 85867 1hd2A 161 1.09e-17 c.47.1.10 60962 1psqA 163 8.58e-16 c.47.1.10 88283 1st9A 143 3.61e-15 c.47.1.10 -7503 1qxhA 167 1.27e-13 c.47.1.10 -7496 1q98A 165 2.05e-11 c.47.1.10 -7499 1kngA 156 1.21e-08 c.47.1.10 72777 1jfuA 186 1.35e-08 c.47.1.10 62940 1lu4A 136 3.40e-07 c.47.1.10 -7509 1okdA 154 5.45e-04 c.47.1.10 -7490 1qk8A 146 5.55e-04 1ewxA c.47.1.10 33061 1ezkA 153 5.74e-04 1ewxA c.47.1.10 33063 1ewxA 146 5.76e-04 1ewxA c.47.1.10 33062 1on4A 174 6.25e-04 c.47.1.10 -7512 1o73A 144 1.30e-03 c.47.1.10 86638 1o81A 152 2.58e-03 c.47.1.10 81175 1o6jA 150 2.63e-03 c.47.1.10 81089 1fg4A 149 2.65e-03 1ewxA c.47.1.10 59814 1oc9A 152 3.35e-03 c.47.1.10 86797 1o8xA 146 2.57e-02 c.47.1.10 86681 1quwA 105 4.51e-02 1thx c.47.1.1 32735 1nw2A 105 5.14e-02 c.47.1.1 -7380 1nswA 105 6.98e-02 c.47.1.1 -7376 1rqmA 105 8.02e-02 1i5gA 144 1.13e-01 1ewxA c.47.1.10 61784 2tir 108 6.09e-01 1thx c.47.1.1 32721 2trxA 108 6.17e-01 1thx c.47.1.1 32719 1f9mA 112 6.37e-01 1erv c.47.1.1 32736 1faaA 124 6.63e-01 1erv c.47.1.1 32738 1nijA 318 7.09e-01 c.37.1.10 85741 d.237.1.1 85742 1dbyA 107 7.21e-01 1thx c.47.1.1 32734 1mek 120 1.06e+00 1erv c.47.1.2 32775 1srx 108 1.07e+00 1thx c.47.1.1 32729 1m7tA 107 1.28e+00 c.47.1.1 78745 1l7cA 269 1.29e+00 a.24.9.1 73647 a.24.9.1 73648 1erv 105 1.82e+00 1erv c.47.1.1 32743 1h6gA 256 1.84e+00 1h6gA a.24.9.1 60669 a.24.9.1 60670 1trs 105 2.62e+00 1erv c.47.1.1 32753 1kebA 108 2.85e+00 c.47.1.1 77341 1txxA 108 3.08e+00 1thx c.47.1.1 32724 1f76A 336 3.12e+00 c.1.4.1 76160 1aroP 883 4.05e+00 1cezA e.8.1.3 43112 1mswD 883 4.14e+00 e.8.1.3 79427 1k28D 391 5.32e+00 b.106.1.1 68052 b.106.1.1 68053 1thx 115 5.45e+00 1thx c.47.1.1 32732 1pzxA 289 7.72e+00 c.119.1.1 -8623 1uedA 406 7.85e+00 a.104.1.1 -1459 1fb6A 105 7.87e+00 1thx c.47.1.1 32739 1gl8A 104 8.10e+00 c.47.1.1 65290 1v5pA 126 8.31e+00 1liaB 177 8.56e+00 1qgwC a.1.1.3 15662 1eo1A 124 8.69e+00 1eo1A c.55.5.1 33739 1pal 108 8.86e+00 1a75A a.39.1.4 17209 1shsA 147 9.04e+00 1shsA b.15.1.1 23675 1j6oA 268 9.27e+00 c.1.9.12 77088 2pvbA 107 9.38e+00 1a75A a.39.1.4 17205 1eakA 421 9.58e+00 a.20.1.2 70093 d.92.1.11 70094 g.14.1.2 70095 g.14.1.2 70096 g.14.1.2 70097 1vjnA 220 1.06e+01 unknown_sccs -11458 1ck7A 631 1.07e+01 1ck7A a.20.1.2 58969 b.66.1.1 27538 d.92.1.11 58970 g.14.1.2 44674 g.14.1.2 44675 g.14.1.2 44676 1qydA 313 1.14e+01 c.2.1.2 -5786 1kwgA 645 1.18e+01 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1o63A 219 1.29e+01 c.94.1.1 -8691 1h0bA 256 1.37e+01 b.29.1.11 83422 1kkbA 432 1.41e+01 c.37.1.10 72643 1qf5A 431 1.44e+01 1adeA c.37.1.10 32212 1cg4A 431 1.44e+01 1adeA c.37.1.10 32228 1cg1A 431 1.46e+01 1adeA c.37.1.10 32223 1cg3A 431 1.52e+01 1adeA c.37.1.10 32219 2azoA 232 1.57e+01 1azo c.52.1.14 33330 1nfgA 457 1.61e+01 b.92.1.3 85632 c.1.9.6 85633 1fvjA 189 1.68e+01 1fvkA unknown_sccs -7426 1kyoG 126 1.71e+01 f.27.1.1 73259 1kb9G 125 1.73e+01 f.27.1.1 77322 1ac1A 189 1.74e+01 1fvkA unknown_sccs -7421 1fvkA 189 1.84e+01 1fvkA unknown_sccs -7419 1so6A 216 1.84e+01 1so3A 216 1.85e+01 1nxpA 120 1.88e+01 c.23.1.1 -6424 1bq7A 189 1.92e+01 1fvkA unknown_sccs -7432 1huw 191 1.95e+01 1huw a.26.1.1 16831 1qxpA 900 1.95e+01 a.39.1.8 -861 a.39.1.8 -870 b.14.1.1 -3041 d.3.1.3 -8887 1n67A 359 1.96e+01 b.2.3.4 85354 b.2.3.4 85355 1qhtA 775 1.96e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1f6dA 376 1.97e+01 1f6dA c.87.1.3 35467 1j1nA 492 1.97e+01 c.94.1.1 83978 1vgvA 384 1.97e+01 c.87.1.3 -8575 1flcB 175 2.12e+01 1flcB h.3.1.1 45716 1jyoA 130 2.14e+01 d.198.1.1 67483 1hovA 163 2.17e+01 d.92.1.11 65897 1cov2 263 2.19e+01 1aym2 1geqA 248 2.20e+01 2tysA c.1.2.4 28589 1qibA 161 2.27e+01 1ck7A d.92.1.11 40359 1a9xA 1073 2.29e+01 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1e2rA 567 2.35e+01 1qksA a.3.1.2 15953 b.70.2.1 27712 2ptk 453 2.43e+01 1fmk b.34.2.1 24517 d.93.1.1 40457 d.144.1.7 41692 1qksA 567 2.44e+01 1qksA a.3.1.2 15951 b.70.2.1 27710 1acvA 189 2.48e+01 1fvkA unknown_sccs -7428 1khiA 176 2.55e+01 b.34.5.2 77408 b.40.4.5 77409 1fdr 248 2.55e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1ub9A 100 2.55e+01 a.4.5.28 -231 1tceA 107 2.57e+01 1d4tA d.93.1.1 40497 1un2A 197 2.77e+01 unknown_sccs -7442 1mv5A 243 2.78e+01 c.37.1.12 -7190 1pxqA 35 2.80e+01 1mil 104 2.87e+01 1d4tA d.93.1.1 40496 1senA 164 2.93e+01 1bmv2 374 2.96e+01 1bmv2 1fmk 452 3.02e+01 1fmk b.34.2.1 24511 d.93.1.1 40436 d.144.1.7 41690 1txjA 171 3.03e+01 1ep8A 112 3.15e+01 c.47.1.1 64907 1kswA 452 3.19e+01 b.34.2.1 68860 d.93.1.1 68861 d.144.1.7 68862 1na6A 404 3.22e+01 unknown_sccs -4715 unknown_sccs -7564 1pdlA 575 3.24e+01 unknown_sccs -13157 1b8dB 177 3.24e+01 1qgwC a.1.1.3 15666 1k28A 584 3.27e+01 b.40.8.1 68049 b.108.1.2 68050 d.2.1.3 68051 1lvoA 302 3.38e+01 b.47.1.4 74284 1dhs 361 3.51e+01 1dhs c.31.1.1 31727 1rlzA 369 3.53e+01 1qq9A 284 3.59e+01 1xjo c.56.5.4 33841 1gq1A 567 3.61e+01 a.3.1.2 76264 b.70.2.1 76265 1hj5A 567 3.61e+01 1qksA a.3.1.2 15927 b.70.2.1 27684 1p6qA 129 3.64e+01 1m8pA 573 3.71e+01 b.122.1.3 78777 c.26.1.5 78778 c.37.1.15 78779 1me8A 503 3.72e+01 c.1.5.1 79028 1i2dA 573 3.73e+01 1g8fA b.122.1.3 61556 c.26.1.5 61557 c.37.1.15 61558 1h3jA 342 3.74e+01 a.93.1.1 83469 1lk5A 229 3.74e+01 unknown_sccs 73960 d.58.40.1 73961 1f0xA 571 3.78e+01 1f0xA d.58.32.2 39483 d.145.1.1 41746 1fw1A 216 3.88e+01 a.45.1.1 60051 c.47.1.5 60052 1mjdA 113 3.90e+01 d.15.11.1 84977 1ltqA 301 3.90e+01 c.108.1.9 78208 c.37.1.1 78209 1uc2A 481 3.97e+01 unknown_sccs -11725