# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qmvA 197 1.22e-38 1qq2A c.47.1.10 33066 1prxB 224 2.36e-35 1prxA c.47.1.10 33077 1prxA 224 3.49e-35 1prxA c.47.1.10 33076 1qq2A 199 4.87e-35 1qq2A c.47.1.10 33064 1n8jA 186 6.80e-29 c.47.1.10 85401 1hd2A 161 2.66e-21 c.47.1.10 60962 1psqA 163 1.98e-19 c.47.1.10 88283 1st9A 143 1.04e-18 c.47.1.10 -7503 1qxhA 167 5.40e-16 c.47.1.10 -7496 1q98A 165 5.22e-15 c.47.1.10 -7499 1jfuA 186 3.48e-11 c.47.1.10 62940 1kngA 156 5.46e-11 c.47.1.10 72777 1lu4A 136 7.76e-10 c.47.1.10 -7509 1ewxA 146 2.42e-05 1ewxA c.47.1.10 33062 1qk8A 146 2.54e-05 1ewxA c.47.1.10 33061 1o6jA 150 3.03e-04 c.47.1.10 81089 1o8xA 146 8.65e-04 c.47.1.10 86681 1gp1A 198 5.23e-03 1gp1A c.47.1.10 33059 1i5gA 144 6.19e-03 1ewxA c.47.1.10 61784 1nw2A 105 1.00e-02 c.47.1.1 -7380 1faaA 124 4.44e-02 1erv c.47.1.1 32738 1f9mA 112 5.90e-02 1erv c.47.1.1 32736 2trxA 108 1.15e-01 1thx c.47.1.1 32719 1ak5 503 1.50e-01 1ak5 c.1.5.1 28639 1me8A 503 1.83e-01 c.1.5.1 79028 1mek 120 1.92e-01 1erv c.47.1.2 32775 1l7mA 211 2.19e-01 c.108.1.4 73664 1senA 164 2.36e-01 1f5sA 211 2.86e-01 1f5sA c.108.1.4 59656 1erv 105 3.18e-01 1erv c.47.1.1 32743 1j97A 211 3.40e-01 1f5sA c.108.1.4 62753 1kebA 108 3.56e-01 c.47.1.1 77341 1zrn 232 4.55e-01 1qq5A c.108.1.1 43323 1tof 112 7.49e-01 1erv c.47.1.1 32733 1nnlA 225 7.51e-01 c.108.1.4 85906 1thx 115 1.05e+00 1thx c.47.1.1 32732 1bmtA 246 1.07e+00 1bmtA a.46.1.1 17757 c.23.6.1 31235 7ahlA 293 1.38e+00 7ahlA f.6.1.1 43812 1lj9A 144 1.71e+00 a.4.5.28 78035 1vknA 351 1.97e+00 1h0bA 256 2.28e+00 b.29.1.11 83422 1l6rA 227 2.31e+00 c.108.1.10 77768 1qhtA 775 2.31e+00 1tgoA c.55.3.5 33722 e.8.1.1 43011 1vgvA 384 2.35e+00 c.87.1.3 -8575 1drmA 131 2.42e+00 1drmA d.110.3.2 40908 1f6dA 376 2.47e+00 1f6dA c.87.1.3 35467 1fb6A 105 2.50e+00 1thx c.47.1.1 32739 1qgvA 142 2.66e+00 1qgvA c.47.1.8 33056 1jflA 228 3.20e+00 c.78.2.1 71656 c.78.2.1 71657 1eo1A 124 3.95e+00 1eo1A c.55.5.1 33739 1gsoA 431 4.51e+00 1gsoA b.84.2.1 28240 c.30.1.1 31647 d.142.1.2 41492 1ii7A 333 4.72e+00 1ii7A d.159.1.4 62415 1drqA 131 4.76e+00 1drmA 1rhcA 330 4.85e+00 c.1.16.3 -5606 1txjA 171 4.96e+00 1o63A 219 6.04e+00 c.94.1.1 -8691 1lst 239 6.11e+00 1lst c.94.1.1 35755 1lswA 131 6.33e+00 d.110.3.2 78181 1gca 309 6.73e+00 1gca c.93.1.1 35659 1fnuA 221 7.08e+00 3seb b.40.2.2 25212 d.15.6.1 37801 1ewcA 214 7.89e+00 3seb b.40.2.2 25199 d.15.6.1 37788 1j1nA 492 8.00e+00 c.94.1.1 83978 1f4kA 122 8.18e+00 1bm9A a.4.5.7 59646 1k7yA 577 8.40e+00 a.46.1.1 68272 c.23.6.1 68273 d.173.1.1 68274 1p4dA 330 9.25e+00 unknown_sccs -10522 1kjnA 157 9.86e+00 c.115.1.1 72614 1tmy 120 9.94e+00 1dbwA c.23.1.1 31083 1ucyH 150 9.95e+00 1ucyH 1fhdA 312 1.00e+01 1taxA c.1.8.3 28915 1m65A 245 1.04e+01 c.6.3.1 84847 1kwhA 492 1.05e+01 c.94.1.1 68876 1fh9A 312 1.06e+01 1taxA c.1.8.3 28913 1bvzA 585 1.17e+01 1bvzA b.1.18.2 21856 b.71.1.1 27783 c.1.8.1 28770 1aiu 105 1.18e+01 1erv c.47.1.1 32746 1delA 241 1.19e+01 1dekA c.37.1.1 31844 1n67A 359 1.19e+01 b.2.3.4 85354 b.2.3.4 85355 1j9eA 147 1.22e+01 c.23.5.1 62756 1qtqA 553 1.27e+01 1gtrA b.53.1.2 26940 c.26.1.1 31579 1f4pA 147 1.30e+01 5nul c.23.5.1 59651 2fx2 147 1.32e+01 1rcf c.23.5.1 31158 2his 312 1.32e+01 1taxA c.1.8.3 28918 1enfA 212 1.35e+01 3seb b.40.2.2 25198 d.15.6.1 37787 1ji2A 585 1.37e+01 b.1.18.2 71672 b.71.1.1 71673 c.1.8.1 71674 2gwxA 267 1.37e+01 2prgA a.123.1.1 19323 1dekA 241 1.40e+01 1dekA c.37.1.1 31842 1akr 147 1.51e+01 1rcf c.23.5.1 31152 1vjrA 271 1.55e+01 unknown_sccs -6853 1bu5A 147 1.55e+01 5nul c.23.5.1 31155 1akhB 83 1.57e+01 1akhB a.4.1.1 15985 1pqnA 127 1.60e+01 c.47.1.8 -7479 1d2rA 326 1.64e+01 1d2rB c.26.1.1 31572 1b2sD 90 1.68e+01 1ay7B c.9.1.1 30837 1gtrA 553 1.68e+01 1gtrA b.53.1.2 26939 c.26.1.1 31578 2gbp 309 1.69e+01 1gca c.93.1.1 35657 1vk8A 106 1.72e+01 1a23 189 1.74e+01 1fvkA unknown_sccs -7441 1kxoA 184 1.75e+01 b.60.1.1 84475 1oi7A 288 1.78e+01 c.2.1.8 87049 c.23.4.1 87050 1d7kA 421 1.83e+01 7odcA b.49.2.3 26486 c.1.6.1 28648 1e0wA 313 1.90e+01 1taxA c.1.8.3 59150 1mvoA 136 2.07e+01 c.23.1.1 79513 1d2rB 326 2.13e+01 1d2rB c.26.1.1 31573 1yrnB 83 2.14e+01 1akhB a.4.1.1 15986 1sknP 92 2.21e+01 1sknP a.37.1.1 17127 1fvkA 189 2.24e+01 1fvkA unknown_sccs -7419 1jniA 123 2.25e+01 a.138.1.3 71761 1d5mC 239 2.28e+01 3seb b.40.2.2 25185 d.15.6.1 37774 1uc7A 125 2.29e+01 c.47.1.1 -7414 1od8A 313 2.30e+01 c.1.8.3 86838 7odcA 424 2.35e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1b74A 254 2.41e+01 1b74A c.78.2.1 35264 c.78.2.1 35265 1ni4A 365 2.54e+01 c.36.1.7 85728 1j3wA 163 2.59e+01 unknown_sccs -10870 1v7oA 165 2.65e+01 unknown_sccs -10249 1b73A 254 2.68e+01 1b74A c.78.2.1 35266 c.78.2.1 35267 8abp 306 2.70e+01 8abp c.93.1.1 35647 1brlB 324 2.78e+01 1lucA c.1.16.1 29554 1f89A 291 2.83e+01 d.160.1.1 64988 1iujA 106 2.83e+01 unknown_sccs -9953 1top 162 2.87e+01 1ncx a.39.1.5 17223 1mznA 240 2.91e+01 a.123.1.1 79704 1erzA 303 3.12e+01 1erzA d.160.1.2 59498 2dri 271 3.18e+01 2dri c.93.1.1 35637 1ez3A 127 3.19e+01 1dn1B a.47.2.1 17768 1ncx 162 3.24e+01 1ncx a.39.1.5 17222 1na6A 404 3.29e+01 unknown_sccs -4715 unknown_sccs -7564 1mvcA 240 3.30e+01 a.123.1.1 79499 1cf2O 337 3.42e+01 1b7gO c.2.1.3 29994 d.81.1.1 39909 1aerA 205 3.46e+01 1aerA d.166.1.1 42249 1kmqA 184 3.49e+01 c.37.1.8 84412 1a8y 367 3.50e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1im5A 180 3.53e+01 unknown_sccs 66211 1g8iA 190 3.53e+01 1rec a.39.1.5 60363 1lucB 324 3.56e+01 1lucA c.1.16.1 29548 1dyr 206 3.57e+01 1aoeA c.71.1.1 34916 1cye 129 3.59e+01 3chy c.23.1.1 31077 1nq6A 302 3.70e+01 c.1.8.3 -5332 1o54A 277 3.74e+01 c.66.1.13 -8095 1e6mA 128 3.74e+01 3chy c.23.1.1 31039 1et9A 204 3.76e+01 1an8 b.40.2.2 25204 d.15.6.1 37793 1auq 208 3.90e+01 1auq c.62.1.1 34137 2pfkA 320 3.92e+01 3pfk c.89.1.1 35577 1pzxA 289 3.92e+01 c.119.1.1 -8623 1hvyA 288 3.94e+01 1bkpA d.117.1.1 41049 1k66A 149 4.00e+01 c.23.1.1 -6406