# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qmvA 197 8.64e-27 1qq2A c.47.1.10 33066 1prxA 224 5.03e-24 1prxA c.47.1.10 33076 1n8jA 186 1.30e-19 c.47.1.10 85401 1st9A 143 1.46e-17 c.47.1.10 -7503 1jfuA 186 7.47e-15 c.47.1.10 62940 1hd2A 161 9.94e-14 c.47.1.10 60962 1kngA 156 1.03e-13 c.47.1.10 72777 1qxhA 167 1.37e-12 c.47.1.10 -7496 1q98A 165 8.47e-12 c.47.1.10 -7499 1lu4A 136 2.63e-11 c.47.1.10 -7509 1gp1A 198 3.30e-10 1gp1A c.47.1.10 33059 1qk8A 146 8.62e-10 1ewxA c.47.1.10 33061 1o8xA 146 1.69e-08 c.47.1.10 86681 2trxA 108 3.41e-08 1thx c.47.1.1 32719 1i5gA 144 5.71e-08 1ewxA c.47.1.10 61784 1fb6A 105 1.62e-07 1thx c.47.1.1 32739 1nw2A 105 2.06e-07 c.47.1.1 -7380 1thx 115 8.88e-07 1thx c.47.1.1 32732 1f9mA 112 6.47e-06 1erv c.47.1.1 32736 1faaA 124 7.15e-06 1erv c.47.1.1 32738 1erv 105 1.67e-05 1erv c.47.1.1 32743 1aiu 105 5.30e-05 1erv c.47.1.1 32746 1r26A 125 1.18e-03 c.47.1.1 -7389 1uc7A 125 5.01e-03 c.47.1.1 -7414 1j1uA 306 1.87e-02 c.26.1.1 83980 1senA 164 6.83e-02 1j97A 211 1.06e-01 1f5sA c.108.1.4 62753 1pn0A 665 1.16e-01 c.3.1.2 -5992 c.47.1.10 -7513 d.16.1.2 -9210 1l7mA 211 1.37e-01 c.108.1.4 73664 1qgvA 142 1.60e-01 1qgvA c.47.1.8 33056 1fohA 664 1.89e-01 1fohA c.3.1.2 30381 c.47.1.10 33078 d.16.1.2 37900 1c0pA 363 3.87e-01 1an9A c.4.1.2 30647 d.16.1.3 37934 1ursA 402 4.32e-01 c.94.1.1 -8651 1fvkA 189 4.54e-01 1fvkA unknown_sccs -7419 1acvA 189 4.82e-01 1fvkA unknown_sccs -7428 8abp 306 5.06e-01 8abp c.93.1.1 35647 1ccwA 137 5.08e-01 1be1 c.23.6.1 31238 1kay 381 5.61e-01 1ba1 c.55.1.1 33385 c.55.1.1 33386 1bupA 386 5.67e-01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1ii7A 333 5.68e-01 1ii7A d.159.1.4 62415 1eljA 381 6.31e-01 4mbp c.94.1.1 35791 1a8l 226 7.20e-01 1a8l c.47.1.2 32777 c.47.1.2 32778 1uf5A 303 7.46e-01 1erzA 303 8.37e-01 1erzA d.160.1.2 59498 1vhqA 232 8.91e-01 c.23.16.2 -6514 1cf2O 337 9.33e-01 1b7gO c.2.1.3 29994 d.81.1.1 39909 1hrdA 449 9.60e-01 1k89 c.2.1.7 30219 c.58.1.1 33867 1qipA 183 1.01e+00 1qipA d.32.1.1 38470 1gca 309 1.11e+00 1gca c.93.1.1 35659 1a8y 367 1.42e+00 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1v58A 241 1.42e+00 1geqA 248 1.65e+00 2tysA c.1.2.4 28589 1bed 181 1.74e+00 1fvkA unknown_sccs -7444 1dosA 358 1.84e+00 1dosA c.1.10.2 29175 1atg 231 1.85e+00 1atg c.94.1.1 35834 1nvmA 345 1.87e+00 a.5.7.1 86249 c.1.10.5 86250 1h7mA 102 1.88e+00 d.79.3.1 83485 1rvgA 305 1.90e+00 c.1.10.2 -5500 1r5jA 337 1.95e+00 unknown_sccs -8471 1twiA 434 2.04e+00 1b74A 254 2.11e+00 1b74A c.78.2.1 35264 c.78.2.1 35265 1lk5A 229 2.13e+00 unknown_sccs 73960 d.58.40.1 73961 1bjx 110 2.17e+00 1bjx c.47.1.2 32774 2lbp 346 2.35e+00 2liv c.93.1.1 35709 1e5xA 486 2.51e+00 c.79.1.1 59283 1tufA 434 2.65e+00 1hp1A 516 2.89e+00 d.114.1.1 70976 d.159.1.2 70977 1j08A 226 2.99e+00 c.47.1.2 83855 c.47.1.2 83856 1ad4A 266 3.13e+00 1aj2 c.1.21.1 29670 1uj6A 227 3.16e+00 1kw3B 292 3.37e+00 d.32.1.3 77549 d.32.1.3 77550 1aerA 205 3.38e+00 1aerA d.166.1.1 42249 1bgvA 449 3.38e+00 1k89 c.2.1.7 30217 c.58.1.1 33865 1dv1A 449 3.43e+00 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 1ush 550 3.63e+00 1ush d.114.1.1 40923 d.159.1.2 42079 1k8kD 300 3.65e+00 d.198.2.1 68309 d.198.2.1 68310 1b1cA 181 4.34e+00 1amoA c.23.5.2 31212 1jflA 228 4.49e+00 c.78.2.1 71656 c.78.2.1 71657 2ptd 298 4.50e+00 2plc c.1.18.2 29605 1es9A 232 4.51e+00 1wab c.23.10.3 31340 1ktbA 405 4.77e+00 b.71.1.1 72960 c.1.8.1 72961 1ad1A 266 4.77e+00 1aj2 c.1.21.1 29668 1wab 232 4.78e+00 1wab c.23.10.3 31341 1k07A 263 4.84e+00 d.157.1.1 77218 1onxA 390 5.19e+00 b.92.1.7 87176 c.1.9.13 87177 1i1qB 192 5.22e+00 1qdlB c.23.16.1 61544 1geeA 261 5.35e+00 c.2.1.2 -5814 1gcoA 261 5.35e+00 1ybvA c.2.1.2 29884 1pqnA 127 5.49e+00 c.47.1.8 -7479 1ad2 228 5.60e+00 1ad2 e.24.1.1 43353 1j1nA 492 5.75e+00 c.94.1.1 83978 1jhdA 396 6.03e+00 b.122.1.3 66712 c.26.1.5 66713 1kte 105 6.12e+00 1kte c.47.1.1 32771 1mldA 314 6.16e+00 2cmd c.2.1.5 30122 d.162.1.1 42089 1dmhA 311 6.41e+00 1dmhA b.3.6.1 22633 1ja1A 622 6.41e+00 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1jf8A 131 6.42e+00 c.44.1.1 66621 1jykA 254 6.90e+00 c.68.1.13 67458 3mag 307 7.07e+00 3mag c.66.1.25 34205 1ecsA 126 7.08e+00 1ecsA d.32.1.2 59407 1usgA 346 7.29e+00 c.93.1.1 -8635 1fukA 165 7.31e+00 1fukA c.37.1.19 32409 1l3kA 196 7.42e+00 d.58.7.1 73539 d.58.7.1 73540 1rjdA 334 7.54e+00 unknown_sccs -8079 2ae2A 260 7.60e+00 1bdb c.2.1.2 29945 1mkiA 330 7.70e+00 e.3.1.2 84994 1f6dA 376 7.71e+00 1f6dA c.87.1.3 35467 1dkzA 219 7.79e+00 1dkzA unknown_sccs -445 unknown_sccs -3060 1va4A 279 7.83e+00 1p0hA 318 7.84e+00 d.108.1.1 -10802 1h75A 81 8.06e+00 1h75A c.47.1.1 60716 1tc5A 194 8.09e+00 1kyqA 274 8.09e+00 c.2.1.11 73281 e.37.1.1 73282 1eejA 216 8.15e+00 1eejA c.47.1.9 33057 d.17.3.1 38071 1v39 322 8.17e+00 3mag c.66.1.25 34206 1vp9 322 8.17e+00 3mag c.66.1.25 34210 1vpt 348 8.32e+00 3mag c.66.1.25 34207 1qo7A 394 8.53e+00 1qo7A c.69.1.11 34697 1rv3A 483 9.05e+00 1s3iA 310 9.08e+00 b.46.1.1 -4111 c.65.1.1 -8042 1l6rA 227 9.18e+00 c.108.1.10 77768 2myr 501 9.26e+00 1vjrA 271 9.80e+00 unknown_sccs -6853 1qydA 313 1.01e+01 c.2.1.2 -5786 1qhtA 775 1.03e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1f1uA 323 1.04e+01 d.32.1.3 83200 d.32.1.3 83201 1brt 277 1.08e+01 1brt c.69.1.12 34699 1gg4A 452 1.08e+01 1gg4A c.98.1.1 58985 c.59.1.1 33957 c.72.2.1 58986 1fkx 349 1.10e+01 1a4mA c.1.9.1 29018 1h65A 270 1.13e+01 c.37.1.8 65640 1jsxA 207 1.13e+01 c.66.1.20 71846 1me8A 503 1.19e+01 c.1.5.1 79028 1ac5 483 1.20e+01 1ac5 c.69.1.5 34653 1ttzA 87 1.20e+01 1e4mM 501 1.21e+01 1e70M c.1.8.4 59226 1vjqA 79 1.23e+01 unknown_sccs -13478 1rj9A 304 1.23e+01 a.24.13.1 -631 c.37.1.10 -7129 1ak5 503 1.25e+01 1ak5 c.1.5.1 28639 1befA 181 1.26e+01 1befA b.47.1.3 26419 1j5xA 342 1.27e+01 c.80.1.1 71591 1o98A 511 1.28e+01 c.105.1.1 86684 c.76.1.3 86685 1f89A 291 1.29e+01 d.160.1.1 64988 1f1xA 322 1.33e+01 d.32.1.3 83208 d.32.1.3 83209 1jfrA 262 1.33e+01 1jfrA c.69.1.16 34724 1g2qA 187 1.35e+01 c.61.1.1 65117 1k66A 149 1.37e+01 c.23.1.1 -6406 1p4oA 322 1.39e+01 d.144.1.7 87775 1broA 277 1.41e+01 1brt c.69.1.12 34700 1ntvA 152 1.45e+01 b.55.1.2 86168 1a4mA 349 1.48e+01 1a4mA c.1.9.1 29014 1louA 101 1.50e+01 1ris d.58.14.1 39323 1rlkA 117 1.55e+01 unknown_sccs -7526 1m65A 245 1.58e+01 c.6.3.1 84847 1o63A 219 1.62e+01 c.94.1.1 -8691 1id1A 153 1.64e+01 1id1A c.2.1.9 62286 1bj4A 470 1.65e+01 1bj4A c.67.1.4 34479 1sviA 195 1.67e+01 1i52A 236 1.73e+01 1i52A c.68.1.13 61767 1lqpA 135 1.73e+01 d.32.1.2 78151 1nkiA 135 1.73e+01 d.32.1.2 -9544 1d7oA 297 1.73e+01 1enp c.2.1.2 29907 1a8q 274 1.74e+01 1brt c.69.1.12 34702 1hq0A 295 1.74e+01 1hzgA d.194.1.1 61122 1pot 325 1.74e+01 1pot c.94.1.1 35807 1nh8A 304 1.76e+01 c.94.1.1 80507 d.58.5.3 80508 1a8s 273 1.81e+01 1brt c.69.1.12 34710 1dekA 241 1.82e+01 1dekA c.37.1.1 31842 1kid 203 1.83e+01 1derA c.8.5.1 30771 1eqjA 511 1.85e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1kjnA 157 1.86e+01 c.115.1.1 72614 1l1lA 739 1.87e+01 c.7.1.4 73470 1e58A 249 1.89e+01 1qhfA c.60.1.1 59262 1hrnA 337 1.89e+01 1smrA b.50.1.2 26869 1vicA 262 1.93e+01 c.68.1.13 -8252 1rkd 309 1.94e+01 1rkd c.72.1.1 34928 1nnlA 225 1.94e+01 c.108.1.4 85906 1vjfA 180 1.95e+01 d.116.1.1 -10941 1e6yC 247 1.96e+01 1mroC d.58.31.1 39441 1a53 247 1.98e+01 1a53 c.1.2.4 28564 1dxy 333 2.04e+01 1dxy c.2.1.4 30094 c.23.12.1 31354 1k3eA 156 2.06e+01 d.198.1.1 68103 1j8yF 297 2.06e+01 1ng1 a.24.13.1 62747 c.37.1.10 62748 1lrzA 426 2.06e+01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1ass 159 2.09e+01 1a6dA c.8.5.2 30818 1efvB 255 2.12e+01 1efvB c.26.2.3 31634 1odkA 235 2.12e+01 c.56.2.1 86863 1vh7A 265 2.13e+01 c.1.2.1 -5159 1gsoA 431 2.15e+01 1gsoA b.84.2.1 28240 c.30.1.1 31647 d.142.1.2 41492 1pjjA 271 2.15e+01 1ja9A 274 2.17e+01 c.2.1.2 62817 1k6dA 220 2.19e+01 unknown_sccs 72082 1whtB 153 2.21e+01 1whtB 1oltA 457 2.22e+01 unknown_sccs -5688 1whsB 153 2.24e+01 1whtB 1uheA 97 2.25e+01 1enp 312 2.26e+01 1enp c.2.1.2 29906 1fg7A 356 2.27e+01 1gewA c.67.1.1 59819 1mtzA 293 2.28e+01 c.69.1.7 79467 1h1dA 221 2.28e+01 c.66.1.1 83452 1jvwA 167 2.30e+01 d.26.1.1 71907 1o2dA 371 2.30e+01 e.22.1.2 86591 1mswD 883 2.30e+01 e.8.1.3 79427 3chy 128 2.30e+01 3chy c.23.1.1 31038 1im8A 244 2.32e+01 c.66.1.14 66212 1zrn 232 2.34e+01 1qq5A c.108.1.1 43323 1hdoA 206 2.34e+01 1he2A c.2.1.2 60965 1hgxA 183 2.35e+01 1tc1A c.61.1.1 34027 1ujpA 271 2.42e+01 c.1.2.4 -5177 1ogiA 303 2.44e+01 b.43.4.2 -4042 c.25.1.1 -6587 1i7qB 193 2.45e+01 1qdlB c.23.16.1 61902 1hyhA 309 2.46e+01 1hyhA c.2.1.5 30150 d.162.1.1 42117 1vhcA 224 2.47e+01 c.1.10.1 -5488 1fc4A 401 2.48e+01 1bs0A c.67.1.4 59760 1g0oA 283 2.50e+01 1ybvA c.2.1.2 60181 1ha1 184 2.51e+01 1ha1 d.58.7.1 39147 d.58.7.1 39148 1go2A 304 2.53e+01 b.43.4.2 76243 c.25.1.1 76244 1kllA 130 2.54e+01 d.32.1.2 72720 1nriA 306 2.55e+01 c.80.1.3 86123 1tz9A 367 2.57e+01 2reb 352 2.58e+01 2reb c.37.1.11 32282 d.48.1.1 38767 1g3qA 237 2.59e+01 1hyqA c.37.1.10 60237 1opr 213 2.62e+01 1opr c.61.1.1 34091 1nijA 318 2.65e+01 c.37.1.10 85741 d.237.1.1 85742 1j8mF 297 2.65e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1ezvB 352 2.68e+01 1ezvB d.185.1.1 59543 d.185.1.1 59544 1o1yA 239 2.69e+01 c.23.16.1 86554 1gewA 356 2.72e+01 1gewA c.67.1.1 60470 1k1eA 180 2.75e+01 c.108.1.5 67995 1k8tA 510 2.76e+01 e.41.1.1 68316 1nnjA 271 2.77e+01 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1t9kA 347 2.78e+01 1cb0A 283 2.86e+01 1cb0A c.56.2.1 33790 1ur1A 378 2.86e+01 c.1.8.3 -5311 1j3mA 129 2.87e+01 1k32A 1045 2.87e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1hfuA 503 2.89e+01 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 1f9zA 135 2.89e+01 1qipA d.32.1.1 38484 1eokA 290 2.93e+01 1eokA c.1.8.5 28991 1igs 248 2.94e+01 1a53 c.1.2.4 28565 1han 297 3.01e+01 1han d.32.1.3 38506 d.32.1.3 38507 1lkdA 297 3.01e+01 d.32.1.3 78059 d.32.1.3 78060 1d3yA 301 3.04e+01 1d3yA e.12.1.1 43252 1mqoA 227 3.07e+01 1abrA 251 3.13e+01 1mrj d.165.1.1 42196 1ni9A 338 3.13e+01 e.7.1.2 85739 1ei1A 391 3.15e+01 1aj6 d.14.1.3 37570 d.122.1.2 41104 1l8wA 348 3.15e+01 a.154.1.1 73704 1m3sA 186 3.16e+01 c.80.1.3 78573 1vid 221 3.16e+01 1vid c.66.1.1 34178 2fokA 579 3.17e+01 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1nbwB 117 3.20e+01 c.51.3.2 80396 1fjhA 257 3.20e+01 1fjhB c.2.1.2 29870 1d3vA 323 3.24e+01 1d3vA c.42.1.1 32559 1jpmA 366 3.28e+01 c.1.11.2 67031 d.54.1.1 67032 1dkuA 317 3.29e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1qb7A 236 3.32e+01 1qb7A c.61.1.1 34087 1m7gA 211 3.33e+01 c.37.1.4 78724 1pq4A 291 3.42e+01 c.92.2.2 -8633 1hzyA 332 3.44e+01 1pscA c.1.9.3 61468 1un7A 400 3.44e+01 b.92.1.5 -5077 c.1.9.10 -5429 1qcwA 410 3.44e+01 1gox c.1.4.1 28622 1hxhA 253 3.45e+01 c.2.1.2 76725 1iloA 77 3.45e+01 c.47.1.1 66205 1c7gA 456 3.46e+01 c.67.1.2 -8153 1ecpA 238 3.49e+01 1ecpA c.56.2.1 33775 1que 303 3.49e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1ff9A 450 3.49e+01 1ff9A c.2.1.3 30039 d.81.1.2 39954 1lyxA 248 3.50e+01 c.1.1.1 78304 1i0dA 332 3.51e+01 1pscA c.1.9.3 61487 1i9sA 210 3.51e+01 1i9sA c.45.1.1 62099 1elqA 390 3.52e+01 1elqA c.67.1.3 34436 1eluA 390 3.52e+01 1elqA c.67.1.3 34434 1a65A 504 3.52e+01 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1nowA 507 3.56e+01 c.1.8.6 85936 d.92.2.1 85937 1qjcA 158 3.60e+01 1b6tA c.26.1.3 63328 1thfD 253 3.61e+01 1thfD c.1.2.1 28535 1n3lA 372 3.62e+01 c.26.1.1 79966 1uslA 170 3.63e+01 c.121.1.1 -6682 1c3jA 351 3.65e+01 1c3jA c.87.1.1 35459 1lba 146 3.65e+01 1lba d.118.1.1 41062 1k0eA 453 3.68e+01 d.161.1.1 67938 1fezA 256 3.70e+01 1fezA c.108.1.3 43343 1jjiA 311 3.70e+01 c.69.1.2 66766 1hh2P 344 3.70e+01 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1tc1A 220 3.77e+01 1tc1A c.61.1.1 34083 1amf 233 3.78e+01 1wod c.94.1.1 35833 1f75A 249 3.79e+01 1f75A c.101.1.1 59662 1nuuA 252 3.89e+01 c.26.1.3 86209 1okgA 373 3.90e+01 c.46.1.2 -7367 c.46.1.2 -7368 unknown_sccs -9494 1lst 239 3.90e+01 1lst c.94.1.1 35755 1ivnA 190 3.97e+01 c.23.10.5 83719 1garA 212 3.97e+01 2gar c.65.1.1 34162 2gar 212 3.99e+01 2gar c.65.1.1 34161 1jcxA 267 3.99e+01 c.1.10.4 66510