# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qmvA 197 1.42e-26 1qq2A c.47.1.10 33066 1prxA 224 4.58e-23 1prxA c.47.1.10 33076 1n8jA 186 1.73e-19 c.47.1.10 85401 1st9A 143 3.26e-18 c.47.1.10 -7503 1jfuA 186 2.02e-14 c.47.1.10 62940 1kngA 156 3.98e-14 c.47.1.10 72777 1hd2A 161 1.48e-13 c.47.1.10 60962 1qxhA 167 1.26e-12 c.47.1.10 -7496 1q98A 165 5.38e-12 c.47.1.10 -7499 1gp1A 198 3.80e-11 1gp1A c.47.1.10 33059 1lu4A 136 7.22e-11 c.47.1.10 -7509 1qk8A 146 6.04e-10 1ewxA c.47.1.10 33061 1o8xA 146 1.63e-09 c.47.1.10 86681 1i5gA 144 5.70e-08 1ewxA c.47.1.10 61784 2trxA 108 9.57e-08 1thx c.47.1.1 32719 1nw2A 105 1.03e-07 c.47.1.1 -7380 1fb6A 105 1.13e-06 1thx c.47.1.1 32739 1thx 115 1.33e-05 1thx c.47.1.1 32732 1f9mA 112 7.53e-05 1erv c.47.1.1 32736 1erv 105 7.56e-05 1erv c.47.1.1 32743 1faaA 124 7.89e-05 1erv c.47.1.1 32738 1aiu 105 5.79e-04 1erv c.47.1.1 32746 1senA 164 5.56e-03 1qgvA 142 1.13e-02 1qgvA c.47.1.8 33056 1r26A 125 1.55e-02 c.47.1.1 -7389 1uc7A 125 4.09e-02 c.47.1.1 -7414 1pqnA 127 1.70e-01 c.47.1.8 -7479 1j1uA 306 8.51e-01 c.26.1.1 83980 1erzA 303 1.08e+00 1erzA d.160.1.2 59498 1gca 309 1.11e+00 1gca c.93.1.1 35659 1l7mA 211 1.41e+00 c.108.1.4 73664 1uf5A 303 1.43e+00 1me8A 503 1.57e+00 c.1.5.1 79028 1flcA 432 2.09e+00 1flcA b.19.1.3 23837 c.23.10.2 31337 1twiA 434 2.25e+00 1j97A 211 2.53e+00 1f5sA c.108.1.4 62753 1gpjA 404 2.56e+00 a.151.1.1 65451 c.2.1.7 65452 d.58.39.1 65453 1fvkA 189 2.56e+00 1fvkA unknown_sccs -7419 1l6rA 227 2.60e+00 c.108.1.10 77768 1nnlA 225 2.60e+00 c.108.1.4 85906 1f89A 291 2.70e+00 d.160.1.1 64988 1tufA 434 2.84e+00 1qhtA 775 3.46e+00 1tgoA c.55.3.5 33722 e.8.1.1 43011 1jflA 228 3.62e+00 c.78.2.1 71656 c.78.2.1 71657 1k66A 149 3.75e+00 c.23.1.1 -6406 1ksiA 642 4.35e+00 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 3chy 128 4.55e+00 3chy c.23.1.1 31038 1pymA 295 4.58e+00 1pymA c.1.12.7 29308 1acvA 189 5.04e+00 1fvkA unknown_sccs -7428 1v2xA 194 5.07e+00 c.116.1.1 -6704 1ii7A 333 5.11e+00 1ii7A d.159.1.4 62415 1ak5 503 5.44e+00 1ak5 c.1.5.1 28639 1j3vA 289 5.68e+00 a.100.1.1 -1303 c.2.1.6 -5947 1lrv 244 5.70e+00 1lrv a.118.1.5 19146 1b63A 333 5.88e+00 1b63A d.14.1.3 37566 d.122.1.2 41107 1befA 181 6.00e+00 1befA b.47.1.3 26419 1e9gA 286 6.29e+00 1wgjA b.40.5.1 59393 1c3jA 351 6.43e+00 1c3jA c.87.1.1 35459 1lc5A 364 6.64e+00 c.67.1.1 73827 1bmtA 246 6.79e+00 1bmtA a.46.1.1 17757 c.23.6.1 31235 2his 312 7.02e+00 1taxA c.1.8.3 28918 1lh0A 213 7.12e+00 c.61.1.1 73896 1shsA 147 7.57e+00 1shsA b.15.1.1 23675 1egaA 301 8.11e+00 1egaA c.37.1.8 32150 d.52.3.1 38836 1qf9A 194 8.28e+00 1zin c.37.1.1 31848 1va4A 279 8.74e+00 1zrn 232 8.99e+00 1qq5A c.108.1.1 43323 1im8A 244 9.11e+00 c.66.1.14 66212 1eulA 994 9.59e+00 1eulA 1eejA 216 9.67e+00 1eejA c.47.1.9 33057 d.17.3.1 38071 8abp 306 9.91e+00 8abp c.93.1.1 35647 1a8q 274 1.00e+01 1brt c.69.1.12 34702 1vjrA 271 1.05e+01 unknown_sccs -6853 1ohtA 215 1.06e+01 d.118.1.1 87036 1aerA 205 1.08e+01 1aerA d.166.1.1 42249 1lvwA 295 1.13e+01 c.68.1.6 84723 1qoyA 318 1.14e+01 1qoyA h.4.4.1 45788 1m5wA 243 1.16e+01 c.1.24.1 84836 1e0wA 313 1.17e+01 1taxA c.1.8.3 59150 1su4A 994 1.18e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1m3sA 186 1.18e+01 c.80.1.3 78573 1aquA 297 1.18e+01 1aquA c.37.1.5 31942 1tl2A 236 1.25e+01 1tl2A b.67.1.1 27541 1opr 213 1.28e+01 1opr c.61.1.1 34091 1ho1A 242 1.35e+01 1ho1A c.1.24.1 61097 1nq6A 302 1.36e+01 c.1.8.3 -5332 1m6jA 261 1.38e+01 c.1.1.1 78693 1pz1A 333 1.40e+01 c.1.7.1 -5255 1jbeA 128 1.42e+01 3chy c.23.1.1 62845 1b1cA 181 1.44e+01 1amoA c.23.5.2 31212 1cozA 129 1.51e+01 1cozA c.26.1.2 31598 1od8A 313 1.54e+01 c.1.8.3 86838 2gwxA 267 1.55e+01 2prgA a.123.1.1 19323 5ukdA 194 1.57e+01 1zin c.37.1.1 31851 1c1kA 217 1.59e+01 1c1kA a.120.1.1 19239 1vizA 240 1.61e+01 c.1.4.1 -5212 1id1A 153 1.64e+01 1id1A c.2.1.9 62286 1bed 181 1.65e+01 1fvkA unknown_sccs -7444 1mr7A 209 1.69e+01 b.81.1.3 -4798 1go4A 205 1.84e+01 d.135.1.1 70292 1ja1A 622 1.84e+01 1amoA b.43.4.1 62803 c.23.5.2 62804 c.25.1.4 62805 1fpzA 212 1.87e+01 1fpzA c.45.1.1 59976 1s2wA 295 1.90e+01 c.1.12.7 -5577 1jjfA 268 1.98e+01 c.69.1.2 66765 1p0hA 318 1.99e+01 d.108.1.1 -10802 1fh9A 312 2.04e+01 1taxA c.1.8.3 28913 1qydA 313 2.05e+01 c.2.1.2 -5786 1vi7A 217 2.06e+01 unknown_sccs -9115 unknown_sccs -10052 1jpmA 366 2.08e+01 c.1.11.2 67031 d.54.1.1 67032 1kte 105 2.19e+01 1kte c.47.1.1 32771 1mvcA 240 2.22e+01 a.123.1.1 79499 1j31A 262 2.28e+01 d.160.1.2 -11473 1fhdA 312 2.35e+01 1taxA c.1.8.3 28915 1kgsA 225 2.38e+01 a.4.6.1 68596 c.23.1.1 68597 1r9lA 309 2.45e+01 c.94.1.1 -8700 1oroA 213 2.47e+01 1opr c.61.1.1 34093 1dvjA 246 2.52e+01 1dvjA c.1.2.3 28546 1g38A 393 2.53e+01 2admA c.66.1.27 60235 7ahlA 293 2.61e+01 7ahlA f.6.1.1 43812 1ja9A 274 2.65e+01 c.2.1.2 62817 1oz7A 131 2.77e+01 d.169.1.1 -11622 1aq0A 306 2.78e+01 1aq0A c.1.8.3 28842 1nvmB 312 2.81e+01 c.2.1.3 86251 d.81.1.1 86252 2dri 271 2.82e+01 2dri c.93.1.1 35637 1nal1 297 2.87e+01 1nal3 1je5A 206 2.95e+01 1je5A b.40.4.7 62909 1i2aA 219 2.99e+01 e.24.1.1 -12012 1iwlA 182 3.06e+01 b.125.1.1 83757 1bw0A 416 3.13e+01 1bw0A c.67.1.1 34385 1v58A 241 3.20e+01 1f74A 293 3.33e+01 1nal3 c.1.10.1 29079 1q74A 303 3.38e+01 unknown_sccs -8121 1gewA 356 3.41e+01 1gewA c.67.1.1 60470 1pzxA 289 3.45e+01 c.119.1.1 -8623 1fnuA 221 3.46e+01 3seb b.40.2.2 25212 d.15.6.1 37801 1onxA 390 3.49e+01 b.92.1.7 87176 c.1.9.13 87177 5nul 138 3.52e+01 5nul c.23.5.1 31191 1dcfA 136 3.68e+01 1dcfA c.23.1.2 31124 1g8iA 190 3.72e+01 1rec a.39.1.5 60363 1s3zA 165 3.96e+01