PFRMAT RR TARGET T0269 AUTHOR 4204-4258-2837 REMARK From group SAM-TO4-hand under the direction of REMARK Kevin Karplus. REMARK Project by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network METHOD using 280 inputs. METHOD Input includes separation and sequence length, corrected METHOD mutual information between columns (M. Cline) and METHOD an e-value measure of correlation between columns (K Karplus) METHOD NN: NN280-240n300.net.28 METHOD Other inputs are from alignments and METHOD secondary predictions from SAM-t2k and SAM-t04 of METHOD University of California, Santa Cruz MODEL 1 MPGSIPLIGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVC TTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFP IIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRL VDEILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPPTTEDQARARM ESGQYRCLDWWFCWDTPASRDDVEEARRYLRRAAEKPAKLLYEEARTHLH 73 129 0 8 0.6732 41 74 0 8 0.6222 74 130 0 8 0.6154 45 79 0 8 0.612 64 85 0 8 0.595 76 85 0 8 0.56865 40 103 0 8 0.56865 12 113 0 8 0.56355 75 85 0 8 0.56185 42 73 0 8 0.56185 40 128 0 8 0.55505 85 126 0 8 0.5525 40 85 0 8 0.53805 39 85 0 8 0.5287 64 82 0 8 0.52615 40 101 0 8 0.5236 40 73 0 8 0.5236 41 127 0 8 0.51425 41 102 0 8 0.51425 47 126 0 8 0.50915 73 131 0 8 0.5066 47 85 0 8 0.4998 44 82 0 8 0.4998 41 101 0 8 0.49725 42 71 0 8 0.49215 38 130 0 8 0.47685 42 102 0 8 0.4641 40 74 0 8 0.4641 41 75 0 8 0.46155 41 73 0 8 0.46155 39 69 0 8 0.45645 74 102 0 8 0.4539 41 85 0 8 0.4539 54 127 0 8 0.45135 41 76 0 8 0.45135 36 45 0 8 0.45135 126 150 0 8 0.44625 40 75 0 8 0.44625 42 115 0 8 0.44115 126 143 0 8 0.43435 45 80 0 8 0.4318 47 60 0 8 0.4267 42 101 0 8 0.4267 40 50 0 8 0.4267 36 133 0 8 0.42075 36 82 0 8 0.42075 101 131 0 8 0.41565 41 128 0 8 0.41565 41 115 0 8 0.41565 38 73 0 8 0.4131 110 129 0 8 0.41055 69 130 0 8 0.40885 47 57 0 8 0.4063 41 53 0 8 0.40375 40 64 0 8 0.40375 54 85 0 8 0.4012 45 78 0 8 0.4012 71 101 0 8 0.3961 75 127 0 8 0.39355 74 154 0 8 0.39355 42 127 0 8 0.39355 50 82 0 8 0.391 75 103 0 8 0.38845 73 97 0 8 0.38845 54 126 0 8 0.38845 40 110 0 8 0.38845 41 69 0 8 0.38335 75 101 0 8 0.3808 40 54 0 8 0.37825 85 127 0 8 0.3757 82 104 0 8 0.3757 64 103 0 8 0.3757 46 85 0 8 0.3757 42 64 0 8 0.3757 51 80 0 8 0.37315 82 103 0 8 0.3706 45 54 0 8 0.3706 46 126 0 8 0.36805 45 82 0 8 0.36805 40 57 0 8 0.36805 54 128 0 8 0.3655 53 128 0 8 0.3655 113 128 0 8 0.36295 49 103 0 8 0.36295 40 158 0 8 0.36295 24 129 0 8 0.36295 124 143 0 8 0.3604 101 130 0 8 0.35785 49 127 0 8 0.3553 47 103 0 8 0.3553 44 79 0 8 0.35275 40 82 0 8 0.35275 24 128 0 8 0.35275 129 154 0 8 0.34765 82 129 0 8 0.34765 81 103 0 8 0.34765 47 81 0 8 0.34765 46 82 0 8 0.34765 76 125 0 8 0.34595 50 127 0 8 0.34595 74 115 0 8 0.3434 40 61 0 8 0.3434 39 104 0 8 0.3434 38 64 0 8 0.3434 17 73 0 8 0.3434 75 86 0 8 0.34085 73 137 0 8 0.34085 73 101 0 8 0.34085 44 81 0 8 0.34085 82 128 0 8 0.3383 64 102 0 8 0.3383 49 85 0 8 0.3383 40 115 0 8 0.3383 64 75 0 8 0.33575 36 143 0 8 0.33065 36 126 0 8 0.33065 51 124 0 8 0.3281 126 149 0 8 0.3264 50 126 0 8 0.32385 50 85 0 8 0.32385 86 126 0 8 0.3213 64 101 0 8 0.3213 51 126 0 8 0.3213 44 78 0 8 0.3213 12 110 0 8 0.3213 41 161 0 8 0.31875 38 75 0 8 0.31875 38 47 0 8 0.31875 129 158 0 8 0.3162 101 115 0 8 0.3162 42 129 0 8 0.3162 82 138 0 8 0.31195 42 137 0 8 0.31195 103 129 0 8 0.3094 102 115 0 8 0.3094 50 76 0 8 0.3094 42 69 0 8 0.30685 40 76 0 8 0.30685 55 143 0 8 0.3043 41 54 0 8 0.3043 40 127 0 8 0.3043 73 104 0 8 0.30005 57 158 0 8 0.30005 47 125 0 8 0.30005 46 80 0 8 0.30005 44 53 0 8 0.30005 36 69 0 8 0.30005 78 125 0 8 0.2975 75 130 0 8 0.2975 41 82 0 8 0.2975 75 126 0 8 0.29495 69 102 0 8 0.29495 58 125 0 8 0.29495 49 80 0 8 0.29495 42 75 0 8 0.29495 36 49 0 8 0.29495 49 150 0 8 0.29325 42 74 0 8 0.29325 41 125 0 8 0.29325 17 102 0 8 0.29325 73 99 0 8 0.2907 54 137 0 8 0.2907 49 77 0 8 0.2907 46 103 0 8 0.2907 40 125 0 8 0.2907 75 115 0 8 0.28815 51 82 0 8 0.28645 40 49 0 8 0.28645 74 125 0 8 0.2839 85 115 0 8 0.28135 54 115 0 8 0.28135 53 127 0 8 0.28135 12 24 0 8 0.28135 73 109 0 8 0.27965 54 125 0 8 0.2771 41 77 0 8 0.2771 41 57 0 8 0.2771 126 137 0 8 0.27455 73 85 0 8 0.27455 46 125 0 8 0.27455 41 150 0 8 0.27455 82 143 0 8 0.2703 75 125 0 8 0.2703 57 127 0 8 0.2703 49 126 0 8 0.2703 49 102 0 8 0.2703 82 127 0 8 0.2686 76 86 0 8 0.26605 50 101 0 8 0.26605 57 73 0 8 0.2635 48 82 0 8 0.2635 42 150 0 8 0.2635 40 53 0 8 0.2635 40 145 0 8 0.2618 42 142 0 8 0.25925 24 103 0 8 0.25925 54 75 0 8 0.25755 45 133 0 8 0.25755 79 126 0 8 0.255 76 127 0 8 0.255 60 69 0 8 0.255 47 150 0 8 0.255 73 102 0 8 0.2533 101 125 0 8 0.25075 69 85 0 8 0.25075 54 82 0 8 0.25075 44 127 0 8 0.25075 44 126 0 8 0.25075 127 158 0 8 0.24905 78 124 0 8 0.2448 55 126 0 8 0.2448 49 125 0 8 0.24225 49 82 0 8 0.24225 49 78 0 8 0.24225 42 85 0 8 0.24225 73 200 0 8 0.24055 57 126 0 8 0.24055 49 143 0 8 0.24055 46 75 0 8 0.24055 42 76 0 8 0.24055 36 47 0 8 0.24055 104 115 0 8 0.238 54 102 0 8 0.238 39 53 0 8 0.238 82 153 0 8 0.2363 47 133 0 8 0.2363 41 142 0 8 0.2346 41 141 0 8 0.2346 41 126 0 8 0.2346 36 103 0 8 0.2346 85 101 0 8 0.23205 45 55 0 8 0.23035 44 137 0 8 0.23035 77 125 0 8 0.2278 50 115 0 8 0.2278 47 143 0 8 0.2278 44 85 0 8 0.2278 76 103 0 8 0.2261 50 75 0 8 0.2261 45 85 0 8 0.2261 42 82 0 8 0.2261 41 103 0 8 0.2261 54 101 0 8 0.2244 52 156 0 8 0.2244 51 79 0 8 0.2244 12 109 0 8 0.2244 53 126 0 8 0.22185 51 75 0 8 0.22185 46 78 0 8 0.22185 113 196 0 8 0.22015 55 67 0 8 0.22015 42 125 0 8 0.21845 42 128 0 8 0.21675 103 126 0 8 0.2142 80 106 0 8 0.2125 53 86 0 8 0.2125 49 79 0 8 0.2125 46 127 0 8 0.2125 45 77 0 8 0.2125 44 54 0 8 0.2125 115 127 0 8 0.2108 86 125 0 8 0.2108 53 130 0 8 0.2108 53 76 0 8 0.2108 49 142 0 8 0.2108 36 144 0 8 0.2108 99 112 0 8 0.2091 85 150 0 8 0.2091 54 74 0 8 0.2091 47 67 0 8 0.2091 44 125 0 8 0.2091 125 143 0 8 0.20655 61 75 0 8 0.20655 51 81 0 8 0.20655 49 81 0 8 0.20655 48 81 0 8 0.20655 45 81 0 8 0.20655 42 97 0 8 0.20655 64 126 0 8 0.20485 60 141 0 8 0.20485 57 75 0 8 0.20485 51 149 0 8 0.20485 49 156 0 8 0.20485 46 143 0 8 0.20485 49 76 0 8 0.20315 49 75 0 8 0.20315 46 64 0 8 0.20315 44 71 0 8 0.20315 42 78 0 8 0.20315 39 49 0 8 0.20315 17 42 0 8 0.20315 115 140 0 8 0.20145 104 158 0 8 0.20145 46 77 0 8 0.20145 45 126 0 8 0.20145 36 67 0 8 0.20145 53 125 0 8 0.19975 53 104 0 8 0.19975 53 85 0 8 0.19975 154 187 0 8 0.1972 109 145 0 8 0.1972 51 125 0 8 0.1972 17 82 0 8 0.1972 17 41 0 8 0.1972 101 126 0 8 0.1955 82 156 0 8 0.1955 73 125 0 8 0.1955 45 67 0 8 0.1955 42 54 0 8 0.1955 128 187 0 8 0.1938 103 127 0 8 0.1938 74 126 0 8 0.1938 54 97 0 8 0.1938 40 141 0 8 0.1938 14 27 0 8 0.1938 51 78 0 8 0.1921 44 101 0 8 0.1921 40 150 0 8 0.1921 73 82 0 8 0.1904 73 126 0 8 0.1887 54 76 0 8 0.1887 53 75 0 8 0.1887 44 80 0 8 0.1887 42 104 0 8 0.1887 36 46 0 8 0.1887 35 70 0 8 0.1887 64 86 0 8 0.187 48 80 0 8 0.187 44 97 0 8 0.187 42 126 0 8 0.187 42 57 0 8 0.187 125 141 0 8 0.1853 52 148 0 8 0.1853 48 79 0 8 0.1853 124 142 0 8 0.1836 54 78 0 8 0.1836 53 82 0 8 0.1836 52 80 0 8 0.1836 49 128 0 8 0.1836 40 77 0 8 0.1836 53 64 0 8 0.1819 47 114 0 8 0.1819 112 200 0 8 0.1802 111 200 0 8 0.1802 47 86 0 8 0.1802 END