# List of top-scoring protein chains for T0269.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1prxA 224 1.69e-02 1prxA c.47.1.10 33076 1booA 323 8.83e-01 1booA c.66.1.11 34248 1aozA 552 1.69e+00 1aozA b.6.1.3 23124 b.6.1.3 23125 b.6.1.3 23126 1gw5S 142 2.21e+00 d.110.4.2 70633 1v3wA 173 2.25e+00 b.81.1.5 -4815 1hfx 123 2.33e+00 3lzt d.2.1.2 36600 1a4v 123 2.60e+00 3lzt d.2.1.2 36599 1b9oA 123 2.61e+00 3lzt d.2.1.2 36597 1krrA 203 2.79e+00 b.81.1.3 72899 1hml 142 3.01e+00 3lzt d.2.1.2 36598 1s1dA 331 3.30e+00 unknown_sccs -4566 1qq2A 199 3.31e+00 1qq2A c.47.1.10 33064 1zin 217 3.59e+00 1zin c.37.1.1 31915 g.41.2.1 45178 1su4A 994 3.60e+00 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1p3jA 217 4.02e+00 c.37.1.1 -6996 g.41.2.1 -12769 1rh5B 74 4.29e+00 unknown_sccs -12198 1qmvA 197 4.38e+00 1qq2A c.47.1.10 33066 1alc 123 5.18e+00 3lzt d.2.1.2 36596 1prlC 64 6.51e+00 1ckaA b.34.2.1 24524 1nloC 64 6.52e+00 1ckaA b.34.2.1 24519 1qubA 319 6.82e+00 1qubA g.18.1.1 44863 g.18.1.1 44864 g.18.1.1 44865 g.18.1.1 44866 g.18.1.1 44867 1c1zA 326 6.95e+00 1qubA g.18.1.1 44868 g.18.1.1 44869 g.18.1.1 44870 g.18.1.1 44871 g.18.1.1 44872 1d0dA 60 7.04e+00 1kigI g.8.1.2 44566 1s3gA 217 1.06e+01 c.37.1.1 -6998 g.41.2.1 -12771 1dq7A 64 1.09e+01 1aho g.3.7.1 44137 1ktbA 405 1.24e+01 b.71.1.1 72960 c.1.8.1 72961 1ulo 152 1.29e+01 1ulo b.18.1.14 23768 1r79A 84 1.52e+01 g.49.1.1 -12829 1gw5A 621 1.54e+01 a.118.1.10 70629 1vfyA 73 1.63e+01 1vfyA g.50.1.1 45357 1vhmA 195 1.87e+01 d.110.2.1 -10828 1ex7A 186 1.87e+01 1gky c.37.1.1 59537 1gky 187 1.89e+01 1gky c.37.1.1 31839 1gnlA 544 1.98e+01 e.26.1.1 70287 1g20E 289 2.05e+01 1cp2A c.37.1.10 32247 1j31A 262 2.08e+01 d.160.1.2 -11473 1fp6A 289 2.10e+01 1cp2A c.37.1.10 32243 1lddA 74 2.27e+01 a.4.5.34 73841 1de0A 289 2.27e+01 1cp2A c.37.1.10 32255 1iaiI 218 2.37e+01 1igtB b.1.1.1 20075 b.1.1.2 21107 1m3yA 413 2.44e+01 b.121.2.3 78579 b.121.2.3 78580 1m4xA 413 2.46e+01 i.6.1.1 78627 1j5qA 437 2.58e+01 b.121.2.3 77084 b.121.2.3 77085 1dceB 331 2.67e+01 1dceB a.102.4.3 18872 1qd1A 325 2.82e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1e62A 304 2.92e+01 1fnc b.43.4.2 59285 c.25.1.1 59286 2afpA 129 3.09e+01 2afpA d.169.1.1 42349 1ov3A 138 3.11e+01 b.34.2.1 87451 b.34.2.1 87452 1ohfA 644 3.16e+01 unknown_sccs -3012 1iltA 152 3.16e+01 1irp b.42.1.2 25554 1irp 153 3.17e+01 1irp b.42.1.2 25559 1ocxA 182 3.20e+01 b.81.1.3 86814 1b3bA 415 3.21e+01 1hwyA c.2.1.7 30244 c.58.1.1 33892 1i3sA 298 3.22e+01 b.28.1.1 66021 1i3pA 298 3.26e+01 b.28.1.1 66020 1nv8A 284 3.28e+01 c.66.1.30 86224 1p35A 299 3.30e+01 1p35A b.28.1.1 23925 1i4eA 300 3.31e+01 1p35A b.28.1.1 61685 1lgcB 53 3.37e+01 2ltnB 1qhqA 140 3.42e+01 1qhqA b.6.1.1 63326 1bjfA 193 3.45e+01 1rec a.39.1.5 17331 1dllA 441 3.45e+01 1a8d b.29.1.6 24263 b.42.4.2 25608 1dfqA 444 3.48e+01 1a8d b.29.1.6 24267 b.42.4.2 25612 1q9bA 43 3.50e+01 g.3.1.1 -12392 1a8d 452 3.54e+01 1a8d b.29.1.6 24262 b.42.4.2 25607 1o6xA 81 3.56e+01 d.58.3.1 81105 1diwA 441 3.59e+01 1a8d b.29.1.6 24264 b.42.4.2 25609 1ng2A 193 3.62e+01 b.34.2.1 85660 b.34.2.1 85661 1fv3A 472 3.67e+01 b.29.1.6 60038 b.42.4.2 60039 1uecA 193 3.70e+01 b.34.2.1 88481 b.34.2.1 88482 1d0hA 469 3.80e+01 1a8d b.29.1.6 24265 b.42.4.2 25610 1lgbB 53 3.88e+01 2ltnB 1l6rA 227 3.90e+01 c.108.1.10 77768 1v9pA 584 3.94e+01 a.60.2.2 -1017 b.40.4.6 -3952 d.142.2.2 -11248 1se9A 126 3.98e+01 d.15.1.1 -9145 1lofD 52 3.99e+01 2ltnB