# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1prxA 224 1.60e-02 1prxA c.47.1.10 33076 1prxB 224 1.64e-02 1prxA c.47.1.10 33077 1qmvA 197 2.03e+00 1qq2A c.47.1.10 33066 1ex7A 186 3.86e+00 1gky c.37.1.1 59537 1gky 187 3.90e+00 1gky c.37.1.1 31839 1hurA 180 5.52e+00 1hurA c.37.1.8 32052 1g5pA 289 5.75e+00 1cp2A c.37.1.10 32253 1fp6A 289 6.41e+00 1cp2A c.37.1.10 32243 1bob 320 7.21e+00 1bob d.108.1.1 40816 1qm9A 198 8.64e+00 1qm9A d.58.7.1 39207 d.58.7.1 39208 1nipA 289 8.80e+00 1cp2A c.37.1.10 32263 1hfx 123 9.76e+00 3lzt d.2.1.2 36600 1b9oA 123 1.14e+01 3lzt d.2.1.2 36597 1j2iA 166 1.16e+01 1o3yA 166 1.16e+01 c.37.1.8 86618 1umdA 367 1.32e+01 c.36.1.11 -6969 1rh5B 74 1.41e+01 unknown_sccs -12198 1r8sA 164 1.42e+01 c.37.1.8 -7082 1aquA 297 1.74e+01 1aquA c.37.1.5 31942 1ls6A 295 1.75e+01 c.37.1.5 -7026 1gks 78 1.82e+01 1cc5 a.3.1.1 15909 1eqfA 280 1.89e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1e6yC 247 1.89e+01 1mroC d.58.31.1 39441 1f60B 94 1.91e+01 1b64 d.58.12.1 39307 1v3wA 173 1.91e+01 b.81.1.5 -4815 1qxoA 388 1.98e+01 unknown_sccs -11161 1sbp 310 2.13e+01 1sbp c.94.1.1 35760 1g7cB 94 2.17e+01 1b64 d.58.12.1 39308 1izmA 184 2.25e+01 unknown_sccs -1233 1itpA 77 2.29e+01 d.58.3.2 66371 1p5jA 372 2.36e+01 1pz1A 333 2.36e+01 c.1.7.1 -5255 1mr3F 181 2.37e+01 c.37.1.8 79422 1m5tA 124 2.39e+01 c.23.1.1 78660 1o13A 136 2.43e+01 c.55.5.1 80762 1lliA 92 2.46e+01 1lmb3 a.35.1.2 17025 1nv8A 284 2.61e+01 c.66.1.30 86224 1okrA 123 2.66e+01 unknown_sccs -235 1umqA 81 2.68e+01 unknown_sccs -203 1faoA 126 2.77e+01 1faoA b.55.1.1 26974 1uw4A 91 2.85e+01 unknown_sccs -10038 1kshA 186 2.98e+01 c.37.1.8 72914 1e5uI 187 3.28e+01 1f00I b.1.14.1 22372 d.169.1.3 42441 1gqeA 365 3.31e+01 e.38.1.1 70351 1p8cA 145 3.35e+01 unknown_sccs -1927 1qubA 319 3.41e+01 1qubA g.18.1.1 44863 g.18.1.1 44864 g.18.1.1 44865 g.18.1.1 44866 g.18.1.1 44867 1eu8A 409 3.47e+01 1eu8A c.94.1.1 59502 1n81A 186 3.50e+01 a.185.1.1 85388 1tkaA 678 3.56e+01 1trkA c.36.1.6 31816 c.36.1.10 31815 c.48.1.1 33096 1hyvA 166 3.56e+01 1b9dA c.55.3.2 61424 1d0dA 60 3.58e+01 1kigI g.8.1.2 44566 1b5tA 275 3.73e+01 1b5tA c.1.23.1 29676 1bt0A 76 3.73e+01 1ubi d.15.1.1 37607 3lck 271 3.92e+01 1fmk d.144.1.7 41686 1hy3A 294 3.98e+01 c.37.1.5 71090