# List of top-scoring protein chains for T0269.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l6pA 125 1.84e-01 b.1.17.1 73626 1prxA 224 1.93e-01 1prxA c.47.1.10 33076 1jpeA 151 2.20e-01 b.1.17.1 77146 1d0dA 60 3.68e-01 1kigI g.8.1.2 44566 1plfA 72 8.73e-01 1tvxA d.9.1.1 37373 1npbA 141 1.40e+00 d.32.1.2 -9549 9ldtA 332 1.84e+00 3ldh c.2.1.5 30154 d.162.1.1 42121 1b7bA 310 1.95e+00 1b7bA c.73.1.1 34963 1i10A 331 2.08e+00 3ldh c.2.1.5 61499 d.162.1.1 61500 1pi2 63 2.22e+00 1pi2 g.3.13.1 44342 1bwlA 399 2.64e+00 1oyc c.1.4.1 28606 1bwkA 399 2.64e+00 1oyc c.1.4.1 28605 1oyc 400 2.64e+00 1oyc c.1.4.1 28603 1k03A 399 2.64e+00 c.1.4.1 63322 2pth 193 3.46e+00 2pth c.56.3.1 33793 1o6xA 81 3.67e+00 d.58.3.1 81105 1lajA 217 4.32e+00 b.121.4.5 77865 1qwtA 255 5.17e+00 unknown_sccs -3329 1j2fA 258 5.21e+00 unknown_sccs -3331 1kjwA 295 5.47e+00 b.34.2.1 68643 c.37.1.1 68644 1jxmA 301 5.58e+00 b.34.2.1 67420 c.37.1.1 67421 1h6kX 97 7.62e+00 d.58.7.1 60684 1df9C 72 7.79e+00 1pi2 g.3.13.1 44348 1krrA 203 8.64e+00 b.81.1.3 72899 1ulo 152 8.86e+00 1ulo b.18.1.14 23768 1gtmA 419 9.39e+00 1hwyA c.2.1.7 30223 c.58.1.1 33871 1s1iT 83 9.64e+00 1mc8A 343 1.03e+01 a.60.7.1 78945 c.120.1.2 78946 1vhcA 224 1.04e+01 c.1.10.1 -5488 1kcxA 518 1.06e+01 b.92.1.3 -5074 c.1.9.6 -5426 2abxA 74 1.16e+01 1tgxA g.7.1.1 44424 1cvh 255 1.17e+01 2cba b.74.1.1 27936 1jzdC 132 1.20e+01 b.1.17.1 84261 1h6kZ 98 1.25e+01 d.58.7.1 60686 1hc9B 74 1.27e+01 g.7.1.1 65787 1h2vZ 156 1.37e+01 d.58.7.1 76595 1ov3A 138 1.44e+01 b.34.2.1 87451 b.34.2.1 87452 1e3jA 352 1.46e+01 1e3jA b.35.1.2 24765 c.2.1.1 29781 1ovzA 207 1.49e+01 b.1.1.4 87473 b.1.1.4 87474 1py9A 116 1.54e+01 b.1.1.1 -2320 1dqcA 74 1.54e+01 1dqcA g.31.1.1 44964 1j31A 262 1.61e+01 d.160.1.2 -11473 1nv8A 284 1.66e+01 c.66.1.30 86224 1bi8B 166 1.67e+01 1bd8 d.211.1.1 19158 1f0kA 364 1.70e+01 1f0kA c.87.1.2 35465 1b9gA 57 1.70e+01 2gf1 g.1.1.1 43991 1shsA 147 1.73e+01 1shsA b.15.1.1 23675 1bswA 197 1.77e+01 1atlA d.92.1.9 40329 1gk8I 140 1.79e+01 d.73.1.1 65242 1ng2A 193 1.81e+01 b.34.2.1 85660 b.34.2.1 85661 1budA 197 1.85e+01 1atlA d.92.1.9 40328 1uctA 218 1.86e+01 b.1.1.4 88467 b.1.1.4 88468 1l4iA 206 1.87e+01 b.1.11.1 73564 b.7.2.1 73565 1uecA 193 1.90e+01 b.34.2.1 88481 b.34.2.1 88482 1f08A 148 1.90e+01 1f08A d.89.1.2 59564 1bd8 156 1.91e+01 1bd8 d.211.1.1 19157 1mpuA 138 1.95e+01 d.169.1.1 85040 1ggvA 232 2.00e+01 1din c.69.1.9 34683 1hyrA 137 2.03e+01 1b6e d.169.1.1 61413 1ksyA 154 2.09e+01 d.89.1.2 72948 1ap7 168 2.15e+01 1bd8 d.211.1.1 19170 1blxB 166 2.15e+01 1bd8 d.211.1.1 19160 1ja3A 127 2.22e+01 d.169.1.1 71621 1ubeA 349 2.23e+01 c.37.1.11 88412 d.48.1.1 88413 1p4lD 122 2.27e+01 d.169.1.1 -11636 2pil 159 2.27e+01 2pil d.24.1.1 38376 1nor 61 2.28e+01 3ebx g.7.1.1 44454 1h20A 39 2.30e+01 g.3.2.1 83461 4cpaI 38 2.30e+01 4cpaI g.3.2.1 44074 1jfh 496 2.31e+01 1smd b.71.1.1 27762 c.1.8.1 28749 1ose 496 2.31e+01 1smd b.71.1.1 27766 c.1.8.1 28753 1ppi 496 2.32e+01 1smd b.71.1.1 27763 c.1.8.1 28750 1hc9A 74 2.39e+01 g.7.1.1 65786 1dhkA 496 2.40e+01 1smd b.71.1.1 27761 c.1.8.1 28748 1bvnP 496 2.40e+01 1smd b.71.1.1 27767 c.1.8.1 28754 1kxqA 496 2.40e+01 b.71.1.1 73163 c.1.8.1 73164 1hx0A 496 2.40e+01 b.71.1.1 61346 c.1.8.1 61347 1pig 496 2.40e+01 1smd b.71.1.1 27764 c.1.8.1 28751 1pmmA 466 2.46e+01 c.67.1.6 -8159 1m3yA 413 2.58e+01 b.121.2.3 78579 b.121.2.3 78580 1ir21 140 2.58e+01 1iiuA 174 2.59e+01 b.60.1.1 66151 1m4xA 413 2.61e+01 i.6.1.1 78627 1se1A 277 2.70e+01 b.1.17.1 -2859 c.47.1.1 -7411 1gcqC 70 2.71e+01 1gcpA b.34.2.1 60436 1j5qA 437 2.74e+01 b.121.2.3 77084 b.121.2.3 77085 1ln4A 104 2.97e+01 d.68.4.1 74043 1emuA 132 2.99e+01 1agrE a.91.1.1 18549 1s9qA 251 3.09e+01 1tfcA 251 3.09e+01 1gwjA 377 3.11e+01 c.1.4.1 70671 1dk8A 147 3.27e+01 1agrE a.91.1.1 18548 1gjyA 167 3.29e+01 a.39.1.8 70199 1b2uD 90 3.31e+01 1ay7B c.9.1.1 30843 1nfp 228 3.38e+01 1nfp c.1.16.2 29555 3fruA 269 3.44e+01 1agdA b.1.1.2 20657 d.19.1.1 38150 1jpkA 388 3.46e+01 c.1.22.1 67026 1je9A 61 3.59e+01 3ebx g.7.1.1 62911 1onjA 61 3.60e+01 g.7.1.1 -12530 1pk6A 133 3.63e+01 b.22.1.1 -3287 1izmA 184 3.64e+01 unknown_sccs -1233 1aye 401 3.65e+01 1aye c.56.5.1 33824 d.58.3.1 39065 1sziA 247 3.67e+01 1hnnA 282 3.74e+01 c.66.1.15 65895 1mi2A 73 3.77e+01 1tvxA d.9.1.1 37455 1rrvA 416 3.92e+01 1h6rA 236 3.93e+01 d.22.1.1 65683 1pkoA 139 3.95e+01 b.1.1.1 88147 1kcgA 124 3.96e+01 d.169.1.1 68438