# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1prxA 224 6.36e-03 1prxA c.47.1.10 33076 1hbnC 248 1.66e-02 1mroC d.58.31.1 60902 1mroC 247 3.71e-02 1mroC d.58.31.1 39437 1e6yC 247 1.29e-01 1mroC d.58.31.1 39441 1a6f 119 2.02e-01 1a6f d.14.1.2 37564 1tljA 213 2.85e-01 1gk8I 140 3.15e-01 d.73.1.1 65242 1iieA 75 3.26e-01 1iieA a.109.1.1 19039 1dzkA 157 6.84e-01 1obpA b.60.1.1 27096 1p36A 164 7.54e-01 d.2.1.3 -8840 1lw9A 164 8.34e-01 d.2.1.3 84727 1vj1A 363 9.38e-01 b.35.1.2 -3728 c.2.1.1 -5752 1qmpA 130 1.07e+00 1dz3A c.23.1.1 31106 1nm1G 125 1.13e+00 d.109.1.1 80653 1obfO 335 1.30e+00 c.2.1.3 86768 d.81.1.1 86769 1hn0A 1021 1.45e+00 a.102.3.2 83616 b.18.1.17 83617 b.24.1.1 83618 b.30.5.2 83619 1gadO 330 1.46e+00 1dssG c.2.1.3 29950 d.81.1.1 39865 1vjhA 122 1.53e+00 d.129.3.1 -11037 1ek8A 185 1.55e+00 1ek8A d.67.3.1 59444 1p5jA 372 1.63e+00 1d4xG 126 1.67e+00 1d0nA d.109.1.1 59109 1qpcA 279 1.69e+00 1fgkA d.144.1.7 41685 1hnnA 282 1.76e+00 c.66.1.15 65895 1gqnA 252 1.86e+00 c.1.10.1 -5494 119l 164 1.96e+00 1l92 d.2.1.3 36622 1szwA 379 2.43e+00 unknown_sccs -10164 1jj2O 148 2.49e+00 1ffkM a.94.1.1 63100 1faeA 629 3.25e+00 1fce a.102.1.2 18837 1nstA 325 3.27e+00 1nstA c.37.1.5 31951 1iv3A 152 3.36e+00 d.79.5.1 76828 1g9gA 629 3.48e+00 a.102.1.2 83279 1kx5B 102 3.70e+00 a.22.1.1 77594 1s72P 149 4.03e+00 1e5eA 404 4.28e+00 1ibjA c.67.1.3 59265 1kskA 234 4.46e+00 unknown_sccs -10150 d.66.1.5 72920 1mpxA 615 4.76e+00 b.18.1.13 85041 c.69.1.21 85042 1b7yB 785 5.03e+00 1pysB a.6.1.1 16301 a.6.1.1 16302 b.40.4.4 25312 d.58.13.1 39311 d.104.1.1 40780 d.138.1.1 41456 1k8kG 151 5.25e+00 a.118.13.1 68313 1jyoE 105 5.33e+00 d.184.1.2 67487 1k3tA 359 5.38e+00 c.2.1.3 72022 d.81.1.1 72023 1o4sA 389 5.49e+00 c.67.1.1 86620 1dmlB 36 5.70e+00 1dmlB 1is1A 185 5.76e+00 d.67.3.1 83704 1r5jA 337 5.87e+00 unknown_sccs -8471 1h8bA 75 5.90e+00 a.39.1.7 60736 1n6zA 105 6.42e+00 unknown_sccs 85369 1b72B 87 6.55e+00 1akhA a.4.1.1 16001 1qxrA 189 7.13e+00 b.82.1.7 -4834 1aiu 105 7.43e+00 1erv c.47.1.1 32746 1tig 94 7.53e+00 1tig d.68.1.1 39566 1gky 187 8.47e+00 1gky c.37.1.1 31839 1yacA 208 8.56e+00 1yacA unknown_sccs 31757 2hntE 81 9.31e+00 1ucyH 1gd1O 334 9.32e+00 1dssG c.2.1.3 29962 d.81.1.1 39877 1c5cL 214 9.50e+00 32c2A b.1.1.1 20474 b.1.1.2 21438 1s72H 171 9.68e+00 1qamA 244 9.69e+00 2ercA c.66.1.24 34220 1rm4A 337 9.83e+00 1pytA 94 9.94e+00 1pytA d.58.3.1 39064 1vfrA 218 9.98e+00 1vfrA d.90.1.1 40247 1shsA 147 1.00e+01 1shsA b.15.1.1 23675 1l6oA 95 1.01e+01 b.36.1.1 84534 1urnA 97 1.03e+01 1urnA d.58.7.1 39153 1ex2A 189 1.03e+01 1ex2A c.51.4.2 33225 1plzA 189 1.04e+01 b.82.1.7 88160 1pufA 77 1.04e+01 a.4.1.1 -191 1ex7A 186 1.07e+01 1gky c.37.1.1 59537 1sjyA 159 1.13e+01 d.113.1.1 -10908 1fwkA 296 1.16e+01 1fwkA d.14.1.5 37576 d.58.26.1 39398 1hq3D 103 1.17e+01 1aoiB a.22.1.1 16464 1h72C 296 1.17e+01 d.14.1.5 60712 d.58.26.1 60713 1snzA 344 1.17e+01 b.30.5.4 -3496 1jc4A 148 1.22e+01 1jc4A d.32.1.4 62863 1dxrM 323 1.32e+01 6prcM f.26.1.1 43432 1qxoA 388 1.32e+01 unknown_sccs -11161 1ngzA 213 1.35e+01 b.1.1.1 80500 b.1.1.2 80501 1iqoA 88 1.41e+01 d.214.1.1 71277 1qfeA 252 1.42e+01 1qfeA c.1.10.1 29167 1burS 123 1.43e+01 1rboC 1v25A 541 1.45e+01 1k68A 140 1.50e+01 c.23.1.1 -6403 1oiaA 95 1.52e+01 d.58.7.1 87051 1dbwA 126 1.53e+01 1dbwA c.23.1.1 31095 1v5lA 103 1.54e+01 1b93A 152 1.57e+01 1b93A c.24.1.2 31507 1eayC 74 1.60e+01 1eayC d.58.24.1 39386 1p4wA 99 1.63e+01 a.4.6.2 87783 1vcbC 160 1.65e+01 1vcbC b.3.3.1 22535 1qgwA 76 1.66e+01 1qgwA d.184.1.1 42616 1ctf 74 1.68e+01 1ctf d.45.1.1 38759 1b66A 140 1.69e+01 1b66A d.96.1.2 40657 1vjqA 79 1.71e+01 unknown_sccs -13478 1uk5A 111 1.72e+01 a.7.7.1 -395 1pzrA 60 1.73e+01 unknown_sccs -815 1sknP 92 1.73e+01 1sknP a.37.1.1 17127 1mlbA 214 1.74e+01 8fabA b.1.1.1 20050 b.1.1.2 21092 1dz3A 130 1.74e+01 1dz3A c.23.1.1 31105 1gypA 358 1.79e+01 1dssG c.2.1.3 30004 d.81.1.1 39919 1s72S 85 1.84e+01 1ngmB 72 1.87e+01 j.104.1.1 85687 1ej0A 180 1.88e+01 1ej0A c.66.1.2 34179 1cp2A 269 1.88e+01 1cp2A c.37.1.10 32269 1h4wA 224 1.89e+01 b.47.1.2 65622 1d0dA 60 1.92e+01 1kigI g.8.1.2 44566 1dozA 309 1.96e+01 1ak1 c.92.1.1 35592 1ntvA 152 1.98e+01 b.55.1.2 86168 1fhoA 119 2.01e+01 1fhoA b.55.1.1 26982 1gh9A 71 2.05e+01 1gh9A g.41.6.1 45266 1k8kE 178 2.06e+01 a.148.1.1 68311 1i3cA 149 2.08e+01 c.23.1.1 71112 1jb9A 316 2.18e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1h70A 255 2.23e+01 1h70A d.126.1.3 60711 1k3sA 113 2.25e+01 d.198.1.1 68120 1g1eB 89 2.26e+01 1g1eB a.59.1.1 17931 1jj2R 84 2.27e+01 1ffkP d.12.1.1 63103 1i52A 236 2.36e+01 1i52A c.68.1.13 61767 1kcvL 214 2.37e+01 b.1.1.1 72317 b.1.1.2 72318 1kt6A 183 2.41e+01 b.60.1.1 84466 1diiC 80 2.43e+01 1diiC a.3.1.1 15925 1pyaA 81 2.44e+01 1pyaA d.155.1.1 42026 1mo0A 275 2.45e+01 c.1.1.1 79329 1f08A 148 2.57e+01 1f08A d.89.1.2 59564 1ncwL 219 2.58e+01 b.1.1.1 85557 b.1.1.2 85558 1k3eA 156 2.61e+01 d.198.1.1 68103 1qwkA 317 2.62e+01 c.1.7.1 -5237 1ash 150 2.66e+01 1ash a.1.1.2 15622 1oi0A 124 2.70e+01 unknown_sccs -8782 1msc 129 2.70e+01 1msc d.85.1.1 40039 1gz6A 319 2.73e+01 c.2.1.2 76410 1n91A 108 2.77e+01 d.206.1.1 80326 1gxrA 337 2.78e+01 b.69.4.1 70722 1nd4A 264 2.79e+01 d.144.1.6 -11381 1kj6A 45 2.80e+01 g.9.1.1 72580 1fm0D 81 2.80e+01 1fmaD d.15.3.1 37642 1uwvA 433 2.82e+01 unknown_sccs -3950 unknown_sccs -8107 1erv 105 2.85e+01 1erv c.47.1.1 32743 1qwgA 251 2.85e+01 unknown_sccs -5678 1jj2S 119 2.89e+01 1ffkQ b.34.5.1 63104 1fxlA 167 2.91e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1dqnA 230 2.91e+01 1dqnA c.61.1.1 34067 1nb9A 147 2.95e+01 b.43.5.1 85515 1ibrB 462 3.03e+01 1qgrA a.118.1.1 19120 1qmvA 197 3.08e+01 1qq2A c.47.1.10 33066 8rucI 123 3.09e+01 1rboC d.73.1.1 39629 1ohzB 60 3.12e+01 a.139.1.1 -147 1q8iA 783 3.12e+01 c.55.3.5 -7635 e.8.1.1 -11885 1n1cA 217 3.14e+01 a.184.1.1 85254 1s72T 120 3.15e+01 1uklC 61 3.18e+01 a.38.1.1 -807 1lf7A 182 3.22e+01 b.60.1.1 73878 1gmxA 108 3.31e+01 c.46.1.3 65355 1cpcA 162 3.35e+01 1cpcA a.1.1.3 15643 1m12A 84 3.37e+01 a.64.1.1 84745 1a48 306 3.41e+01 1a48 d.143.1.1 41590 1aua 296 3.42e+01 1aua a.5.3.1 16290 c.13.1.1 30882 1uufA 369 3.48e+01 b.35.1.2 -3706 c.2.1.1 -5730 1whsB 153 3.52e+01 1whtB 1uw4A 91 3.52e+01 unknown_sccs -10038 1r4gA 53 3.55e+01 unknown_sccs -428 1fxrA 64 3.56e+01 1fxd d.58.1.4 38993 1oz9A 150 3.59e+01 unknown_sccs -10588 1df7A 159 3.64e+01 3dfr c.71.1.1 34885 1gx1A 160 3.69e+01 d.79.5.1 70675 2olbA 517 3.73e+01 1jevA c.94.1.1 35721 1k6dA 220 3.73e+01 unknown_sccs 72082 1qgrA 876 3.75e+01 1qgrA a.118.1.1 19119 1jq5A 370 3.78e+01 e.22.1.2 67084 1m4jA 142 3.78e+01 d.109.1.2 78602 1dxeA 256 3.80e+01 1dxeA c.1.12.5 29310 1tetL 216 3.86e+01 32c2A b.1.1.1 19902 b.1.1.2 20996 1ospL 214 3.89e+01 32c2A b.1.1.1 20116 b.1.1.2 21146 1jetA 517 3.91e+01 1jevA c.94.1.1 35718 1i06A 180 3.99e+01 1mup b.60.1.1 27131 1r26A 125 3.99e+01 c.47.1.1 -7389