# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1prxA 224 8.26e-02 1prxA c.47.1.10 33076 1g8kA 825 5.89e-01 1g8jA b.52.2.2 26920 c.81.1.1 35328 1hnnA 282 6.96e-01 c.66.1.15 65895 1mroC 247 1.15e+00 1mroC d.58.31.1 39437 1hbnC 248 1.17e+00 1mroC d.58.31.1 60902 1e6yC 247 1.39e+00 1mroC d.58.31.1 39441 1gk8I 140 1.41e+00 d.73.1.1 65242 3thiA 371 1.59e+00 2thiA c.94.1.1 35792 1nfp 228 2.56e+00 1nfp c.1.16.2 29555 1a6f 119 3.27e+00 1a6f d.14.1.2 37564 1o97C 264 3.97e+00 c.26.2.3 81232 1p9qC 256 4.04e+00 1t95A 240 4.29e+00 1tltA 319 4.48e+00 1qfeA 252 5.10e+00 1qfeA c.1.10.1 29167 1gqnA 252 5.23e+00 c.1.10.1 -5494 1ek8A 185 5.99e+00 1ek8A d.67.3.1 59444 1e6wA 260 6.66e+00 1e6wA c.2.1.2 59326 1is1A 185 7.50e+00 d.67.3.1 83704 1nm1G 125 7.66e+00 d.109.1.1 80653 1d4xG 126 7.70e+00 1d0nA d.109.1.1 59109 1h6kZ 98 7.78e+00 d.58.7.1 60686 1cb0A 283 9.63e+00 1cb0A c.56.2.1 33790 1vjhA 122 1.15e+01 d.129.3.1 -11037 1ooeA 236 1.16e+01 c.2.1.2 87196 1nf2A 268 1.22e+01 c.108.1.10 -6842 1uw4A 91 1.35e+01 unknown_sccs -10038 1gypA 358 1.38e+01 1dssG c.2.1.3 30004 d.81.1.1 39919 1fxoA 293 1.42e+01 1g0rA c.68.1.6 34524 1e8cA 498 1.52e+01 c.98.1.1 59377 c.59.1.1 59378 c.72.2.1 59379 1gadO 330 1.52e+01 1dssG c.2.1.3 29950 d.81.1.1 39865 1d0dA 60 1.97e+01 1kigI g.8.1.2 44566 1cipA 353 2.06e+01 1cipA a.66.1.1 18210 c.37.1.8 32093 1o3yA 166 2.22e+01 c.37.1.8 86618 1j98A 157 2.27e+01 1j98A d.185.1.2 62755 1obfO 335 2.29e+01 c.2.1.3 86768 d.81.1.1 86769 1gd1O 334 2.30e+01 1dssG c.2.1.3 29962 d.81.1.1 39877 1tljA 213 2.30e+01 1k3tA 359 2.46e+01 c.2.1.3 72022 d.81.1.1 72023 1gky 187 2.58e+01 1gky c.37.1.1 31839 1ex7A 186 2.58e+01 1gky c.37.1.1 59537 1shuX 182 2.66e+01 c.62.1.1 -7982 1nvmA 345 2.75e+01 a.5.7.1 86249 c.1.10.5 86250 1gweA 503 2.78e+01 e.5.1.1 70667 1hurA 180 2.81e+01 1hurA c.37.1.8 32052 1s72S 85 2.84e+01 2olbA 517 2.84e+01 1jevA c.94.1.1 35721 1wpoA 256 2.84e+01 1lay b.57.1.1 27012 1jetA 517 2.87e+01 1jevA c.94.1.1 35718 1jj2R 84 2.93e+01 1ffkP d.12.1.1 63103 1i2mA 216 2.98e+01 1byuA c.37.1.8 61568 1oi0A 124 3.01e+01 unknown_sccs -8782 1svsA 353 3.01e+01 1ubeA 349 3.02e+01 c.37.1.11 88412 d.48.1.1 88413 1t4bA 367 3.04e+01 119l 164 3.07e+01 1l92 d.2.1.3 36622 1ls9A 91 3.12e+01 a.3.1.1 78177 1pytA 94 3.25e+01 1pytA d.58.3.1 39064 1vj1A 363 3.26e+01 b.35.1.2 -3728 c.2.1.1 -5752 1fxrA 64 3.30e+01 1fxd d.58.1.4 38993 1lw9A 164 3.47e+01 d.2.1.3 84727 1wdaA 670 3.47e+01 1t3lA 337 3.49e+01 1p36A 164 3.49e+01 d.2.1.3 -8840 1burS 123 3.81e+01 1rboC 1r8sA 164 3.82e+01 c.37.1.8 -7082 1b93A 152 3.99e+01 1b93A c.24.1.2 31507