# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1prxA 224 1.12e-02 1prxA c.47.1.10 33076 1hnnA 282 2.56e-01 c.66.1.15 65895 1e6yC 247 8.31e-01 1mroC d.58.31.1 39441 3thiA 371 1.10e+00 2thiA c.94.1.1 35792 1hbnC 248 1.48e+00 1mroC d.58.31.1 60902 1mroC 247 1.54e+00 1mroC d.58.31.1 39437 1nm1G 125 1.81e+00 d.109.1.1 80653 1ubeA 349 1.87e+00 c.37.1.11 88412 d.48.1.1 88413 1d4xG 126 1.89e+00 1d0nA d.109.1.1 59109 1gk8I 140 1.92e+00 d.73.1.1 65242 1tltA 319 1.99e+00 1a6f 119 3.08e+00 1a6f d.14.1.2 37564 1ek8A 185 3.34e+00 1ek8A d.67.3.1 59444 1d0dA 60 3.45e+00 1kigI g.8.1.2 44566 1nf2A 268 3.57e+00 c.108.1.10 -6842 1hurA 180 4.01e+00 1hurA c.37.1.8 32052 1o3yA 166 4.09e+00 c.37.1.8 86618 1h6kZ 98 4.12e+00 d.58.7.1 60686 1nfp 228 4.26e+00 1nfp c.1.16.2 29555 1e6wA 260 4.29e+00 1e6wA c.2.1.2 59326 1fxoA 293 4.40e+00 1g0rA c.68.1.6 34524 1vjhA 122 4.73e+00 d.129.3.1 -11037 1o97C 264 5.87e+00 c.26.2.3 81232 1r8sA 164 6.20e+00 c.37.1.8 -7082 1cb0A 283 6.43e+00 1cb0A c.56.2.1 33790 1gadO 330 6.85e+00 1dssG c.2.1.3 29950 d.81.1.1 39865 1k3tA 359 7.72e+00 c.2.1.3 72022 d.81.1.1 72023 1gky 187 7.84e+00 1gky c.37.1.1 31839 1oi0A 124 8.04e+00 unknown_sccs -8782 1vhyA 257 8.54e+00 b.122.1.2 -5129 c.116.1.5 -6705 1ex7A 186 8.59e+00 1gky c.37.1.1 59537 1g8kA 825 8.69e+00 1g8jA b.52.2.2 26920 c.81.1.1 35328 1gypA 358 8.79e+00 1dssG c.2.1.3 30004 d.81.1.1 39919 1p9qC 256 8.94e+00 1is1A 185 9.01e+00 d.67.3.1 83704 1obfO 335 9.24e+00 c.2.1.3 86768 d.81.1.1 86769 2olbA 517 9.47e+00 1jevA c.94.1.1 35721 1jetA 517 1.02e+01 1jevA c.94.1.1 35718 1mo0A 275 1.08e+01 c.1.1.1 79329 1pytA 94 1.15e+01 1pytA d.58.3.1 39064 1f08A 148 1.18e+01 1f08A d.89.1.2 59564 1cipA 353 1.19e+01 1cipA a.66.1.1 18210 c.37.1.8 32093 1svsA 353 1.20e+01 1kshA 186 1.33e+01 c.37.1.8 72914 1qwkA 317 1.33e+01 c.1.7.1 -5237 1p0fA 373 1.45e+01 b.35.1.2 87642 c.2.1.1 87643 1gqnA 252 1.47e+01 c.1.10.1 -5494 1k30A 368 1.68e+01 c.112.1.1 68067 1iuqA 367 1.77e+01 c.112.1.1 -8440 1v3vA 333 1.79e+01 1gd1O 334 1.89e+01 1dssG c.2.1.3 29962 d.81.1.1 39877 1j96A 323 1.91e+01 c.1.7.1 71616 1t95A 240 1.95e+01 1nstA 325 2.06e+01 1nstA c.37.1.5 31951 1ngzA 213 2.20e+01 b.1.1.1 80500 b.1.1.2 80501 1t3lA 337 2.29e+01 1ooeA 236 2.30e+01 c.2.1.2 87196 1gh9A 71 2.30e+01 1gh9A g.41.6.1 45266 1i2mA 216 2.34e+01 1byuA c.37.1.8 61568 1uw4A 91 2.36e+01 unknown_sccs -10038 1c5cL 214 2.52e+01 32c2A b.1.1.1 20474 b.1.1.2 21438 1shuX 182 3.02e+01 c.62.1.1 -7982 1s1pA 331 3.11e+01 c.1.7.1 -5240 1eayC 74 3.18e+01 1eayC d.58.24.1 39386 1mo9A 523 3.20e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1ov3A 138 3.34e+01 b.34.2.1 87451 b.34.2.1 87452 1burS 123 3.38e+01 1rboC 1p5jA 372 3.39e+01 1nrlA 316 3.44e+01 a.123.1.1 -1668 1ex2A 189 3.45e+01 1ex2A c.51.4.2 33225 1pkp 150 3.47e+01 1pkp d.14.1.1 37551 d.50.1.2 38787 1m4jA 142 3.51e+01 d.109.1.2 78602 1pjr 724 3.51e+01 1pjr c.37.1.19 32391 c.37.1.19 32392 1kzyC 259 3.61e+01 c.15.1.4 73383 c.15.1.4 73384 1jl1A 155 3.71e+01 c.55.3.1 66821 1dxeA 256 3.74e+01 1dxeA c.1.12.5 29310 1kskA 234 3.86e+01 unknown_sccs -10150 d.66.1.5 72920 1iieA 75 3.88e+01 1iieA a.109.1.1 19039