# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1prxA	224	9.66e-02	1prxA	c.47.1.10	33076
1shsA	147	1.29e+00	1shsA	b.15.1.1	23675
1d0dA	60	1.33e+00	1kigI	g.8.1.2	44566
1hc9A	74	1.72e+00		g.7.1.1	65786
1gk8I	140	1.92e+00		d.73.1.1	65242
1l6oA	95	2.74e+00		b.36.1.1	84534
1vhcA	224	3.92e+00		c.1.10.1	-5488
1f4qA	165	4.05e+00	1alvA	a.39.1.8	17360
1yacA	208	4.14e+00	1yacA	unknown_sccs	31757
1k94A	165	4.61e+00		a.39.1.8	68333
1ln4A	104	5.49e+00		d.68.4.1	74043
1ikoP	178	6.26e+00		b.6.1.5	71243
1l6pA	125	6.74e+00		b.1.17.1	73626
1uw4A	91	7.00e+00		unknown_sccs	-10038
1bd8	156	1.04e+01	1bd8	d.211.1.1	19157
1ntn	72	1.09e+01	3ebx	g.7.1.1	44414
1v54K	56	1.19e+01		f.23.5.1	-12116
2occK	56	1.19e+01	2occK	f.23.5.1	43525
1onjA	61	1.28e+01		g.7.1.1	-12530
1hx0A	496	1.44e+01		b.71.1.1	61346
				c.1.8.1	61347
1j0tA	78	1.62e+01		a.163.1.1	77051
1np3A	338	1.79e+01		a.100.1.2	85946
				c.2.1.6	85947
1jj2O	148	1.89e+01	1ffkM	a.94.1.1	63100
1vjhA	122	2.03e+01		d.129.3.1	-11037
1a6f	119	2.14e+01	1a6f	d.14.1.2	37564
1i8nA	126	2.16e+01	1i8nA	g.10.1.2	61976
1tvxA	75	2.24e+01	1tvxA	d.9.1.1	37441
1s72P	149	2.70e+01			
1qwtA	255	2.77e+01		unknown_sccs	-3329
1rxwA	336	3.03e+01		a.60.7.1	-1041
				c.120.1.2	-6680
1ek8A	185	3.13e+01	1ek8A	d.67.3.1	59444
1g7fA	298	3.24e+01	1pty	c.45.1.2	60330
1smd	496	3.26e+01	1smd	b.71.1.1	27768
				c.1.8.1	28755
1top	162	3.30e+01	1ncx	a.39.1.5	17223
1uuhA	159	3.34e+01		d.169.1.4	-11651
1h6kZ	98	3.56e+01		d.58.7.1	60686
2pil	159	3.61e+01	2pil	d.24.1.1	38376
1dmlB	36	3.62e+01	1dmlB		
1p5vA	235	3.68e+01		b.1.11.1	87812
				b.7.2.1	87813
1pxfA	111	3.68e+01		b.40.4.4	88341
1ptvA	321	3.90e+01	1pty	c.45.1.2	32665
1nm1G	125	3.99e+01		d.109.1.1	80653