# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6yA 301 5.33e-62 a.60.13.1 78716 c.66.1.23 78717 1sqgA 429 3.91e-06 1l3iA 192 9.58e-06 c.66.1.22 77676 1ixkA 315 1.44e-04 unknown_sccs -8099 1xvaA 292 4.25e-04 1xvaA c.66.1.5 34183 1uwvA 433 5.93e-04 unknown_sccs -3950 unknown_sccs -8107 1bhjA 292 8.20e-04 1xvaA c.66.1.5 34189 1d2gA 292 8.33e-04 1xvaA c.66.1.5 34187 1fjxA 327 4.52e-03 6mhtA c.66.1.26 34228 3mhtA 327 5.79e-03 6mhtA c.66.1.26 34234 1ej0A 180 7.13e-03 1ej0A c.66.1.2 34179 1f3lA 321 2.13e-02 1g6q2 c.66.1.6 59630 1dusA 194 3.28e-02 1dusA c.66.1.4 34182 1i9gA 280 3.62e-02 c.66.1.13 62090 1g6q2 328 4.15e-02 1g6q2 1o54A 277 4.34e-02 c.66.1.13 -8095 1jg1A 235 4.49e-02 c.66.1.7 66661 1h1dA 221 5.05e-02 c.66.1.1 83452 1vid 221 6.08e-02 1vid c.66.1.1 34178 1nv8A 284 6.38e-02 c.66.1.30 86224 1dl5A 317 6.45e-02 1dl5A c.66.1.7 64720 d.197.1.1 64721 1hnnA 282 1.01e-01 c.66.1.15 65895 1bdb 277 1.29e-01 1bdb c.2.1.2 29874 1ufkA 254 1.89e-01 unknown_sccs -8103 1hmy 327 1.90e-01 6mhtA c.66.1.26 34229 1f8fA 371 2.41e-01 b.35.1.2 83246 c.2.1.1 83247 1inlA 296 2.57e-01 c.66.1.17 66220 1h2bA 359 2.91e-01 b.35.1.2 -3679 c.2.1.1 -5703 6mhtA 327 2.95e-01 6mhtA c.66.1.26 34226 1jq3A 296 3.88e-01 c.66.1.17 67079 1ne2A 200 4.92e-01 c.66.1.32 85586 1bg6 359 7.07e-01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1fpxA 352 7.43e-01 1fpxA a.4.5.29 59950 c.66.1.12 59951 1fjgB 256 8.14e-01 1fjfB c.23.15.1 31400 1bn7A 294 8.34e-01 1bn6A c.69.1.8 34677 1qyrA 252 9.38e-01 1fp2A 352 1.08e+00 1fpxA a.4.5.29 59941 c.66.1.12 59942 1j5eB 256 1.19e+00 c.23.15.1 71543 1bn6A 294 1.22e+00 1bn6A c.69.1.8 34678 1g60A 260 1.23e+00 c.66.1.11 70151 1kpgA 287 1.28e+00 c.66.1.18 68735 1hdcA 253 1.32e+00 1e6wA c.2.1.2 29862 1pnsB 234 1.40e+00 i.1.1.1 88169 1uirA 314 1.65e+00 c.66.1.17 -8114 1p1cA 199 1.75e+00 c.66.1.16 87669 1cqwA 295 1.79e+00 1b6g c.69.1.8 34679 1ri5A 298 1.80e+00 unknown_sccs -8063 1agnA 373 1.81e+00 2ohxA b.35.1.2 24737 c.2.1.1 29753 1im8A 244 1.94e+00 c.66.1.14 66212 1khhA 198 1.95e+00 c.66.1.16 68615 1l1eA 287 2.00e+00 c.66.1.18 73454 1i1nA 226 2.01e+00 c.66.1.7 71102 1qamA 244 2.01e+00 2ercA c.66.1.24 34220 1bzyA 217 2.02e+00 1qk3A c.61.1.1 34071 1jvbA 347 2.03e+00 b.35.1.2 77181 c.2.1.1 77182 1mwmA 320 2.08e+00 c.55.1.1 79580 c.55.1.1 79581 1qzzA 374 2.11e+00 a.4.5.29 -277 c.66.1.12 -8045 1a27 289 2.18e+00 1fds c.2.1.2 29839 1cfzA 162 2.49e+00 1cfzA c.56.1.1 33754 1kr5A 226 2.66e+00 c.66.1.7 68847 2admA 421 2.69e+00 2admA c.66.1.27 34238 1hetA 374 3.01e+00 2ohxA b.35.1.2 60975 c.2.1.1 60976 1kp9B 287 3.28e+00 c.66.1.18 68734 1st9A 143 3.33e+00 c.47.1.10 -7503 1heuA 374 3.57e+00 2ohxA b.35.1.2 60979 c.2.1.1 60980 1g38A 393 4.11e+00 2admA c.66.1.27 60235 1bgp 309 4.12e+00 1bgp a.93.1.1 18690 1jfuA 186 4.37e+00 c.47.1.10 62940 2hsdA 253 4.38e+00 1e6wA c.2.1.2 29866 2occE 109 4.41e+00 2occE a.118.11.1 19224 1fpqA 372 4.50e+00 1fpqA a.4.5.29 59947 c.66.1.12 59948 1o9gA 250 4.54e+00 c.66.1.29 86692 1kevA 351 4.68e+00 1pedA b.35.1.2 24749 c.2.1.1 29765 4rnpA 883 4.71e+00 1cezA e.8.1.3 43113 1v54E 109 4.94e+00 a.118.11.1 -1652 1s6cA 183 5.10e+00 a.39.1.5 -858 1aqjA 421 5.39e+00 2admA c.66.1.27 34242 2ohxA 374 6.03e+00 2ohxA b.35.1.2 24669 c.2.1.1 29685 1ee2A 373 6.11e+00 2ohxA b.35.1.2 24663 c.2.1.1 29679 1c4xA 285 6.26e+00 1c4xA c.69.1.10 34684 1n8kA 374 6.34e+00 b.35.1.2 80298 c.2.1.1 80299 1jqbA 351 6.37e+00 b.35.1.2 77151 c.2.1.1 77152 1qhaA 917 6.49e+00 1qhaA c.55.1.3 33467 c.55.1.3 33468 c.55.1.3 33469 c.55.1.3 33470 1ad3A 452 6.54e+00 1ad3A c.82.1.1 35335 1j3vA 289 7.57e+00 a.100.1.1 -1303 c.2.1.6 -5947 1czaN 917 7.57e+00 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1k8tA 510 7.79e+00 e.41.1.1 68316 1c14A 262 7.93e+00 1eny c.2.1.2 29927 1qzgA 187 8.11e+00 b.40.4.3 -3920 1rjdA 334 8.44e+00 unknown_sccs -8079 1qsgA 265 8.47e+00 1eny c.2.1.2 29935 1ntr 124 8.63e+00 1dbwA c.23.1.1 31092 1hkbA 917 8.66e+00 1qhaA c.55.1.3 33479 c.55.1.3 33480 c.55.1.3 33481 c.55.1.3 33482 1pedA 351 8.86e+00 1pedA b.35.1.2 24753 c.2.1.1 29769 1ox0A 430 9.01e+00 c.95.1.1 87495 c.95.1.1 87496 1hkcA 917 9.06e+00 1qhaA c.55.1.3 33475 c.55.1.3 33476 c.55.1.3 33477 c.55.1.3 33478 1hucA 47 9.21e+00 1hucA d.3.1.1 37049 1dgkN 917 9.54e+00 1qhaA c.55.1.3 33487 c.55.1.3 33488 c.55.1.3 33489 c.55.1.3 33490 1n0wA 243 9.61e+00 c.37.1.11 79772 1dctA 324 1.03e+01 6mhtA c.66.1.26 34244 1mjfA 281 1.03e+01 c.66.1.17 79198 1nw3A 416 1.13e+01 c.66.1.31 86288 1hmpA 217 1.16e+01 1qk3A c.61.1.1 34075 1ngvA 534 1.18e+01 c.111.1.2 85698 1dqpA 230 1.20e+01 1dqnA c.61.1.1 34069 1qg6A 261 1.23e+01 1eny c.2.1.2 29919 1qmpA 130 1.23e+01 1dz3A c.23.1.1 31106 1kagA 173 1.27e+01 c.37.1.2 72249 1i5rA 327 1.28e+01 c.2.1.2 83668 1pjcA 361 1.33e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 2udpA 338 1.36e+01 1xel c.2.1.2 29791 1bg1A 722 1.38e+01 1bg1A a.47.1.1 17767 b.2.5.5 22461 d.93.1.1 40527 16vpA 366 1.38e+01 16vpA d.180.1.1 42601 2ercA 244 1.48e+01 2ercA c.66.1.24 34224 1h5qA 265 1.56e+01 1cydA c.2.1.2 60643 1jljA 189 1.59e+01 c.57.1.1 63169 1b9gA 57 1.69e+01 2gf1 g.1.1.1 43991 1p27B 106 1.72e+01 d.58.7.1 -10020 1ako 268 1.73e+01 1ako d.151.1.1 41779 1muhA 481 1.73e+01 c.55.3.4 79485 1lbqA 362 1.81e+01 c.92.1.1 77877 1qczA 169 1.86e+01 1qczA c.23.8.1 31276 1jvr 137 1.88e+01 1jvr a.61.1.2 18132 4enl 436 1.88e+01 4enl c.1.11.1 29202 d.54.1.1 38846 1ihcA 188 1.91e+01 1di6A c.57.1.1 62379 1p99A 295 1.94e+01 c.94.1.1 -8697 1hxhA 253 1.96e+01 c.2.1.2 76725 1fdt 327 1.98e+01 1fds c.2.1.2 29841 1sb8A 352 2.01e+01 1hslA 238 2.01e+01 1lst c.94.1.1 35804 1kepA 348 2.06e+01 c.2.1.2 68536 1q7bA 244 2.07e+01 c.2.1.2 -5826 1uxd 65 2.10e+01 1uxc a.35.1.5 17118 1jsxA 207 2.13e+01 c.66.1.20 71846 1iytA 42 2.18e+01 j.42.1.1 76974 1s72B 338 2.18e+01 1sayA 361 2.23e+01 1sayA c.2.1.4 30102 c.23.12.2 31362 1v3vA 333 2.27e+01 1xel 338 2.27e+01 1xel c.2.1.2 29786 1pjbA 361 2.32e+01 1sayA c.2.1.4 30103 c.23.12.2 31363 8adh 374 2.38e+01 2ohxA b.35.1.2 24690 c.2.1.1 29706 1g8aA 227 2.39e+01 c.66.1.3 -8049 1pbv 195 2.40e+01 1pbv a.118.3.1 19179 1lst 239 2.41e+01 1lst c.94.1.1 35755 1nfjA 89 2.42e+01 d.68.6.1 -10285 1oc2A 348 2.46e+01 c.2.1.2 -5753 1tk9A 188 2.50e+01 1kvs 338 2.50e+01 1xel c.2.1.2 29799 1aml 40 2.51e+01 1aml j.42.1.1 46314 1be3D 241 2.51e+01 1be3D a.3.1.3 15955 f.23.11.1 43666 1jj2B 337 2.53e+01 1ffkB b.43.3.2 63086 1musA 477 2.55e+01 c.55.3.4 79494 1ba4 40 2.56e+01 1ba4 j.42.1.1 46312 1m2oA 768 2.60e+01 a.71.2.1 78480 b.2.8.1 78481 c.62.1.2 78482 d.109.2.1 78483 g.41.10.1 78484 1udb 338 2.62e+01 1xel c.2.1.2 29787 1fjeB 175 2.63e+01 1fj7A d.58.7.1 39210 d.58.7.1 39211 1toh 343 2.82e+01 4pah d.178.1.1 42573 2fsp 124 2.87e+01 1dz3A c.23.1.1 31119 1e6wA 260 2.95e+01 1e6wA c.2.1.2 59326 1pjzA 203 2.96e+01 unknown_sccs -8075 1jqeA 292 3.01e+01 c.66.1.19 71789 1a0cA 438 3.03e+01 1a0cA c.1.15.3 29529 1c75A 71 3.16e+01 451c a.3.1.1 15796 1bpb 248 3.22e+01 1bpyA a.60.12.1 75811 d.218.1.2 75812 1udc 338 3.23e+01 1xel c.2.1.2 29785 1ba6 40 3.40e+01 1ba6 j.42.1.1 46315 1hyeA 313 3.48e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1ofuA 320 3.50e+01 c.32.1.1 86972 d.79.2.1 86973 1a7j 290 3.57e+01 1a7j c.37.1.6 31952 1ubeA 349 3.63e+01 c.37.1.11 88412 d.48.1.1 88413 1b35C 282 3.63e+01 1b35C 1ppjD 241 3.71e+01 1vaoA 560 3.85e+01 1qltA d.58.32.1 39461 d.145.1.1 41724 1jb1A 205 3.90e+01 1jb1A c.91.1.2 62832 1hjrA 158 3.96e+01 1hjrA c.55.3.6 33727 1srrA 124 4.00e+01 1dz3A c.23.1.1 31110