# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6yA 301 4.23e-52 a.60.13.1 78716 c.66.1.23 78717 1l3iA 192 4.63e-08 c.66.1.22 77676 1ixkA 315 2.62e-07 unknown_sccs -8099 1ufkA 254 6.34e-05 unknown_sccs -8103 1i9gA 280 1.37e-04 c.66.1.13 62090 1uwvA 433 1.98e-04 unknown_sccs -3950 unknown_sccs -8107 1f3lA 321 2.02e-04 1g6q2 c.66.1.6 59630 1sqgA 429 2.46e-04 1ne2A 200 3.84e-04 c.66.1.32 85586 1g38A 393 4.49e-04 2admA c.66.1.27 60235 1qamA 244 4.74e-04 2ercA c.66.1.24 34220 1jg1A 235 8.03e-04 c.66.1.7 66661 1bdb 277 8.71e-04 1bdb c.2.1.2 29874 1ri5A 298 9.99e-04 unknown_sccs -8063 1inlA 296 1.03e-03 c.66.1.17 66220 1o54A 277 1.90e-03 c.66.1.13 -8095 1dusA 194 1.98e-03 1dusA c.66.1.4 34182 1dl5A 317 2.37e-03 1dl5A c.66.1.7 64720 d.197.1.1 64721 1uirA 314 3.04e-03 c.66.1.17 -8114 1ej0A 180 3.49e-03 1ej0A c.66.1.2 34179 1yub 245 4.14e-03 2ercA c.66.1.24 34219 1qyrA 252 4.21e-03 1jvbA 347 4.38e-03 b.35.1.2 77181 c.2.1.1 77182 1xvaA 292 4.54e-03 1xvaA c.66.1.5 34183 1nv8A 284 8.35e-03 c.66.1.30 86224 1g60A 260 1.77e-02 c.66.1.11 70151 1i1nA 226 2.21e-02 c.66.1.7 71102 1f8fA 371 2.50e-02 b.35.1.2 83246 c.2.1.1 83247 1h1dA 221 3.54e-02 c.66.1.1 83452 1vid 221 6.29e-02 1vid c.66.1.1 34178 1kpgA 287 6.85e-02 c.66.1.18 68735 1hxhA 253 6.93e-02 c.2.1.2 76725 1n8kA 374 9.33e-02 b.35.1.2 80298 c.2.1.1 80299 1mjfA 281 1.02e-01 c.66.1.17 79198 1pjcA 361 1.23e-01 1sayA c.2.1.4 30101 c.23.12.2 31361 1nw3A 416 1.37e-01 c.66.1.31 86288 1qzzA 374 1.45e-01 a.4.5.29 -277 c.66.1.12 -8045 2ohxA 374 1.78e-01 2ohxA b.35.1.2 24669 c.2.1.1 29685 1e9rA 437 2.63e-01 c.37.1.11 64827 1hetA 374 2.68e-01 2ohxA b.35.1.2 60975 c.2.1.1 60976 1li4A 432 2.78e-01 c.2.1.4 84616 c.23.12.3 84617 1q7bA 244 2.99e-01 c.2.1.2 -5826 1iy8A 267 3.34e-01 c.2.1.2 83774 1eg2A 319 4.12e-01 1eg2A c.66.1.11 34249 1jilA 420 6.42e-01 c.26.1.1 66745 1g55A 343 6.74e-01 1g55A c.66.1.26 34247 6mhtA 327 7.77e-01 6mhtA c.66.1.26 34226 1d4fA 431 7.88e-01 1b3rA c.2.1.4 30110 c.23.12.3 31370 1bmtA 246 8.03e-01 1bmtA a.46.1.1 17757 c.23.6.1 31235 1h2bA 359 9.11e-01 b.35.1.2 -3679 c.2.1.1 -5703 1g8sA 230 1.08e+00 c.66.1.3 -8047 1fbnA 230 1.08e+00 1fbnA c.66.1.3 34181 1eswA 500 1.15e+00 1cwyA c.1.8.1 59500 1ift 263 1.21e+00 1mrj d.165.1.1 42211 1kevA 351 1.29e+00 1pedA b.35.1.2 24749 c.2.1.1 29765 1db3A 372 1.35e+00 1db3A c.2.1.2 29813 1dqnA 230 1.36e+00 1dqnA c.61.1.1 34067 1dqpA 230 1.38e+00 1dqnA c.61.1.1 34069 1uq5A 263 1.59e+00 d.165.1.1 -11555 1hdcA 253 1.64e+00 1e6wA c.2.1.2 29862 1mkmA 249 1.72e+00 a.4.5.33 79242 d.110.2.2 79243 1qo7A 394 1.95e+00 1qo7A c.69.1.11 34697 1lrzA 426 1.98e+00 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1nxqA 251 2.06e+00 c.2.1.2 86388 1uohA 226 2.23e+00 d.211.1.1 -9572 1p0iA 529 2.28e+00 c.69.1.1 -8291 1n93X 375 2.38e+00 unknown_sccs -1540 1nffA 260 2.43e+00 c.2.1.2 80457 1fds 327 2.46e+00 1fds c.2.1.2 29838 1fp2A 352 2.52e+00 1fpxA a.4.5.29 59941 c.66.1.12 59942 1o9gA 250 2.63e+00 c.66.1.29 86692 1o5iA 249 2.70e+00 c.2.1.2 -5833 1jsxA 207 2.75e+00 c.66.1.20 71846 1k47A 337 2.77e+00 d.14.1.5 72040 d.58.26.4 72041 1v8aA 265 2.92e+00 c.72.1.2 -8379 2ts1 419 3.11e+00 2ts1 c.26.1.1 31564 1of8A 370 3.31e+00 c.1.10.4 -5508 1prxA 224 3.38e+00 1prxA c.47.1.10 33076 1p1cA 199 3.39e+00 c.66.1.16 87669 1r5jA 337 3.40e+00 unknown_sccs -8471 1p2fA 220 3.40e+00 a.4.6.1 87720 c.23.1.1 87721 1im8A 244 3.49e+00 c.66.1.14 66212 1oaoA 674 3.53e+00 e.26.1.2 86744 1g3qA 237 3.69e+00 1hyqA c.37.1.10 60237 1o88A 353 3.70e+00 b.80.1.1 81178 2occH 85 4.27e+00 2occH a.51.1.1 17796 1v54H 85 4.42e+00 a.51.1.1 -979 1ewkA 490 4.51e+00 1ewkA c.93.1.1 35712 1jqbA 351 4.56e+00 b.35.1.2 77151 c.2.1.1 77152 1jtvA 327 4.64e+00 c.2.1.2 84230 1k2yX 463 4.87e+00 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1nrzA 164 4.88e+00 c.38.1.1 86131 1ii2A 524 4.91e+00 c.91.1.1 66146 c.109.1.1 66147 1o4sA 389 5.06e+00 c.67.1.1 86620 1sb8A 352 5.27e+00 1pq4A 291 5.40e+00 c.92.2.2 -8633 1sw6A 327 6.25e+00 1sw6A d.211.1.1 19176 1e6wA 260 6.33e+00 1e6wA c.2.1.2 59326 1p5dX 463 7.31e+00 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1cs1A 386 7.46e+00 1ibjA c.67.1.3 34399 1efyA 350 8.00e+00 1a26 a.41.1.1 17413 d.166.1.2 42275 1eemA 241 8.38e+00 1eemA a.45.1.1 17717 c.47.1.5 33011 1am2 199 8.51e+00 1am2 b.86.1.2 28381 1h5qA 265 8.75e+00 1cydA c.2.1.2 60643 1pl8A 356 9.58e+00 b.35.1.2 -3716 c.2.1.1 -5740 1jqeA 292 1.00e+01 c.66.1.19 71789 1k1aA 241 1.04e+01 d.211.1.1 67992 2ayh 214 1.05e+01 1axkA b.29.1.2 24172 1ehyA 294 1.07e+01 1ehyA c.69.1.11 34693 1air 353 1.11e+01 1air b.80.1.1 28018 1dp4A 435 1.18e+01 1dp4A c.93.1.1 35710 1g8aA 227 1.20e+01 c.66.1.3 -8049 1dik 874 1.24e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1gz6A 319 1.28e+01 c.2.1.2 76410 1k1xA 659 1.29e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1dcjA 81 1.29e+01 1dcjA d.68.3.3 59115 1oe4A 247 1.35e+01 c.18.1.3 86895 1pwhA 327 1.38e+01 c.79.1.1 -8524 1l6wA 220 1.41e+01 c.1.10.1 73632 1dgfA 497 1.49e+01 1cf9A e.5.1.1 42782 1jcfA 344 1.50e+01 c.55.1.1 62878 c.55.1.1 62879 1rec 201 1.50e+01 1rec a.39.1.5 17326 1f6dA 376 1.54e+01 1f6dA c.87.1.3 35467 1khdA 345 1.54e+01 a.46.2.1 77400 c.27.1.1 77401 1rhs 296 1.54e+01 1rhs c.46.1.2 32703 c.46.1.2 32704 1i4wA 353 1.54e+01 c.66.1.24 66028 1dwkA 156 1.57e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1r6dA 337 1.59e+01 c.2.1.2 -5757 1td5A 202 1.64e+01 1eqfA 280 1.69e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1g0oA 283 1.71e+01 1ybvA c.2.1.2 60181 1j3vA 289 1.73e+01 a.100.1.1 -1303 c.2.1.6 -5947 1v3vA 333 1.84e+01 1srrA 124 1.84e+01 1dz3A c.23.1.1 31110 1gh9A 71 1.89e+01 1gh9A g.41.6.1 45266 1zfjA 491 1.91e+01 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1qmyA 167 1.92e+01 1qmyA d.3.1.2 37094 1cr1A 296 1.96e+01 1cr1A c.37.1.11 32286 1iugA 352 2.01e+01 c.67.1.3 -8176 1eny 268 2.06e+01 1eny c.2.1.2 29910 1o0wA 252 2.08e+01 a.149.1.1 80751 d.50.1.1 80752 1q0gA 117 2.10e+01 1nykA 165 2.11e+01 b.33.1.1 86408 1mwmA 320 2.16e+01 c.55.1.1 79580 c.55.1.1 79581 1ur5A 309 2.24e+01 c.2.1.5 -5910 d.162.1.1 -11477 1bl3A 160 2.29e+01 1b9dA c.55.3.2 33655 5ukdA 194 2.33e+01 1zin c.37.1.1 31851 1uocA 289 2.34e+01 unknown_sccs -7671 1bjwA 382 2.37e+01 1bjwA c.67.1.1 34349 1rkd 309 2.41e+01 1rkd c.72.1.1 34928 1pxgA 382 2.42e+01 c.1.20.1 -5616 1hnjA 317 2.58e+01 1hn9A c.95.1.1 35969 c.95.1.1 35970 1cozA 129 2.71e+01 1cozA c.26.1.2 31598 1vzoA 355 2.72e+01 1b5pA 385 2.79e+01 c.67.1.1 -8133 1kl1A 419 2.81e+01 c.67.1.4 72663 1nkqA 259 2.82e+01 1ble 163 2.83e+01 1ble c.38.1.1 32475 1gc0A 398 2.86e+01 c.67.1.3 70168 1gggA 226 2.94e+01 1lst c.94.1.1 35817 1nw2A 105 3.04e+01 c.47.1.1 -7380 1s9rA 410 3.19e+01 unknown_sccs -10989 1mldA 314 3.22e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1g99A 408 3.23e+01 1g99A c.55.1.2 33457 c.55.1.2 33458 1kolA 398 3.23e+01 b.35.1.2 77474 c.2.1.1 77475 1dz3A 130 3.26e+01 1dz3A c.23.1.1 31105 1i2sA 282 3.26e+01 e.3.1.1 71104 1hy0A 466 3.28e+01 1auwA a.127.1.1 61392 1t95A 240 3.38e+01 1nytA 271 3.38e+01 c.2.1.7 86417 c.58.1.5 86418 1m6eX 359 3.42e+01 unknown_sccs -8071 1jboA 162 3.46e+01 a.1.1.3 84150 1fmcA 255 3.47e+01 1cydA c.2.1.2 29856 1nulA 152 3.49e+01 1nulA c.61.1.1 34011 1m1nB 522 3.49e+01 c.92.2.3 78418 1kblA 873 3.53e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1lk9A 448 3.58e+01 c.67.1.1 78057 1ug6A 431 3.67e+01 c.1.8.4 88490 1a8q 274 3.68e+01 1brt c.69.1.12 34702 1di6A 195 3.75e+01 1di6A c.57.1.1 33863 1h3fA 432 3.77e+01 c.26.1.1 76631 d.66.1.4 76632 1fp1D 372 3.78e+01 1fpqA a.4.5.29 59939 c.66.1.12 59940 1itg 166 3.79e+01 1b9dA c.55.3.2 33661 1uufA 369 3.84e+01 b.35.1.2 -3706 c.2.1.1 -5730 1uruA 244 3.85e+01 unknown_sccs -13001 1m2eA 135 3.88e+01 c.23.1.5 78478 1ne9A 335 3.89e+01 d.108.1.4 -10805 d.108.1.4 -10806 1ex7A 186 3.90e+01 1gky c.37.1.1 59537 1gky 187 3.92e+01 1gky c.37.1.1 31839 1oy3D 282 3.95e+01 d.211.1.1 87554