# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6yA 301 2.61e-56 a.60.13.1 78716 c.66.1.23 78717 1ixkA 315 1.14e-08 unknown_sccs -8099 1l3iA 192 1.58e-07 c.66.1.22 77676 1ufkA 254 1.84e-05 unknown_sccs -8103 1xvaA 292 6.37e-05 1xvaA c.66.1.5 34183 1sqgA 429 9.13e-05 1i9gA 280 1.80e-04 c.66.1.13 62090 1uwvA 433 2.43e-04 unknown_sccs -3950 unknown_sccs -8107 1g38A 393 2.84e-04 2admA c.66.1.27 60235 1ne2A 200 3.25e-04 c.66.1.32 85586 1ej0A 180 4.51e-04 1ej0A c.66.1.2 34179 1inlA 296 8.35e-04 c.66.1.17 66220 1dusA 194 8.80e-04 1dusA c.66.1.4 34182 1ri5A 298 1.48e-03 unknown_sccs -8063 1f3lA 321 1.52e-03 1g6q2 c.66.1.6 59630 1qyrA 252 1.59e-03 1qamA 244 1.89e-03 2ercA c.66.1.24 34220 1o54A 277 2.00e-03 c.66.1.13 -8095 1bdb 277 2.22e-03 1bdb c.2.1.2 29874 1jvbA 347 2.29e-03 b.35.1.2 77181 c.2.1.1 77182 1jg1A 235 2.94e-03 c.66.1.7 66661 1uirA 314 3.91e-03 c.66.1.17 -8114 2ohxA 374 1.09e-02 2ohxA b.35.1.2 24669 c.2.1.1 29685 1dl5A 317 1.10e-02 1dl5A c.66.1.7 64720 d.197.1.1 64721 1hetA 374 1.34e-02 2ohxA b.35.1.2 60975 c.2.1.1 60976 1n8kA 374 1.43e-02 b.35.1.2 80298 c.2.1.1 80299 1i1nA 226 2.04e-02 c.66.1.7 71102 1f8fA 371 2.15e-02 b.35.1.2 83246 c.2.1.1 83247 1qzzA 374 2.45e-02 a.4.5.29 -277 c.66.1.12 -8045 6mhtA 327 6.15e-02 6mhtA c.66.1.26 34226 1yub 245 6.53e-02 2ercA c.66.1.24 34219 1mjfA 281 8.53e-02 c.66.1.17 79198 1nv8A 284 8.56e-02 c.66.1.30 86224 1kpgA 287 1.02e-01 c.66.1.18 68735 1g60A 260 1.07e-01 c.66.1.11 70151 1hxhA 253 1.28e-01 c.2.1.2 76725 1pjcA 361 1.30e-01 1sayA c.2.1.4 30101 c.23.12.2 31361 1p1cA 199 2.27e-01 c.66.1.16 87669 1fbnA 230 2.49e-01 1fbnA c.66.1.3 34181 1g8sA 230 2.49e-01 c.66.1.3 -8047 1iy8A 267 2.54e-01 c.2.1.2 83774 1h2bA 359 2.79e-01 b.35.1.2 -3679 c.2.1.1 -5703 1j3vA 289 2.85e-01 a.100.1.1 -1303 c.2.1.6 -5947 1jsxA 207 3.02e-01 c.66.1.20 71846 1fp2A 352 3.39e-01 1fpxA a.4.5.29 59941 c.66.1.12 59942 1nw3A 416 4.29e-01 c.66.1.31 86288 1h1dA 221 5.29e-01 c.66.1.1 83452 1vid 221 5.49e-01 1vid c.66.1.1 34178 2yhx 457 6.31e-01 2yhx i.12.1.1 46024 2ts1 419 6.47e-01 2ts1 c.26.1.1 31564 1prxA 224 7.05e-01 1prxA c.47.1.10 33076 1e9rA 437 7.23e-01 c.37.1.11 64827 1mkmA 249 7.54e-01 a.4.5.33 79242 d.110.2.2 79243 1jilA 420 7.97e-01 c.26.1.1 66745 1o9gA 250 9.64e-01 c.66.1.29 86692 1db3A 372 9.99e-01 1db3A c.2.1.2 29813 1jy1A 464 1.04e+00 d.136.1.3 67438 d.136.1.3 67439 1sb8A 352 1.15e+00 1eg2A 319 1.18e+00 1eg2A c.66.1.11 34249 1q7bA 244 1.19e+00 c.2.1.2 -5826 1g55A 343 1.39e+00 1g55A c.66.1.26 34247 1sw6A 327 1.54e+00 1sw6A d.211.1.1 19176 1r5jA 337 1.64e+00 unknown_sccs -8471 1ehyA 294 1.64e+00 1ehyA c.69.1.11 34693 1qhtA 775 1.69e+00 1tgoA c.55.3.5 33722 e.8.1.1 43011 1bmtA 246 1.89e+00 1bmtA a.46.1.1 17757 c.23.6.1 31235 1bl3A 160 1.94e+00 1b9dA c.55.3.2 33655 1jqbA 351 2.21e+00 b.35.1.2 77151 c.2.1.1 77152 1li4A 432 2.24e+00 c.2.1.4 84616 c.23.12.3 84617 1kevA 351 2.79e+00 1pedA b.35.1.2 24749 c.2.1.1 29765 1dqnA 230 2.80e+00 1dqnA c.61.1.1 34067 1g8aA 227 2.85e+00 c.66.1.3 -8049 1nxqA 251 3.09e+00 c.2.1.2 86388 1o4sA 389 3.22e+00 c.67.1.1 86620 1nffA 260 3.22e+00 c.2.1.2 80457 1d4fA 431 3.23e+00 1b3rA c.2.1.4 30110 c.23.12.3 31370 1lrzA 426 3.31e+00 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1oe4A 247 3.32e+00 c.18.1.3 86895 1v3vA 333 3.59e+00 1dz3A 130 3.60e+00 1dz3A c.23.1.1 31105 1ift 263 3.78e+00 1mrj d.165.1.1 42211 1cf2O 337 3.78e+00 1b7gO c.2.1.3 29994 d.81.1.1 39909 1hdcA 253 3.86e+00 1e6wA c.2.1.2 29862 1p0fA 373 4.15e+00 b.35.1.2 87642 c.2.1.1 87643 1o5iA 249 4.42e+00 c.2.1.2 -5833 1vkfA 188 4.86e+00 1n93X 375 5.03e+00 unknown_sccs -1540 1pl8A 356 5.05e+00 b.35.1.2 -3716 c.2.1.1 -5740 1qmpA 130 5.33e+00 1dz3A c.23.1.1 31106 1i4wA 353 5.64e+00 c.66.1.24 66028 1gz6A 319 5.96e+00 c.2.1.2 76410 1uq5A 263 6.12e+00 d.165.1.1 -11555 1dqpA 230 6.12e+00 1dqnA c.61.1.1 34069 1k47A 337 6.29e+00 d.14.1.5 72040 d.58.26.4 72041 1qorA 327 6.82e+00 1qorA b.35.1.2 24766 c.2.1.1 29782 1ii2A 524 7.01e+00 c.91.1.1 66146 c.109.1.1 66147 1g3qA 237 7.07e+00 1hyqA c.37.1.10 60237 1srrA 124 7.67e+00 1dz3A c.23.1.1 31110 1im8A 244 7.78e+00 c.66.1.14 66212 1am2 199 8.04e+00 1am2 b.86.1.2 28381 1jcfA 344 8.09e+00 c.55.1.1 62878 c.55.1.1 62879 1wdnA 226 8.19e+00 1lst c.94.1.1 35816 1m6eX 359 8.22e+00 unknown_sccs -8071 1oaoA 674 8.49e+00 e.26.1.2 86744 1k2yX 463 8.56e+00 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1iw7C 1119 8.85e+00 e.29.1.1 71474 2ae2A 260 9.11e+00 1bdb c.2.1.2 29945 1qgvA 142 9.23e+00 1qgvA c.47.1.8 33056 1b8zA 90 9.37e+00 1huuA a.55.1.1 17902 1huxA 270 9.43e+00 1huxA c.55.1.5 61278 1i5gA 144 9.90e+00 1ewxA c.47.1.10 61784 1h5qA 265 1.02e+01 1cydA c.2.1.2 60643 1rec 201 1.04e+01 1rec a.39.1.5 17326 1dp4A 435 1.07e+01 1dp4A c.93.1.1 35710 2ayh 214 1.12e+01 1axkA b.29.1.2 24172 1qmyA 167 1.13e+01 1qmyA d.3.1.2 37094 1eqfA 280 1.14e+01 1eqfA a.29.2.1 16972 a.29.2.1 16973 1bg6 359 1.16e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1ne9A 335 1.21e+01 d.108.1.4 -10805 d.108.1.4 -10806 1bupA 386 1.21e+01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1r6dA 337 1.26e+01 c.2.1.2 -5757 1pqnA 127 1.30e+01 c.47.1.8 -7479 1b5pA 385 1.31e+01 c.67.1.1 -8133 1vj1A 363 1.31e+01 b.35.1.2 -3728 c.2.1.1 -5752 1uufA 369 1.34e+01 b.35.1.2 -3706 c.2.1.1 -5730 1m1nB 522 1.35e+01 c.92.2.3 78418 1qvbA 481 1.36e+01 1qvbA c.1.8.4 28983 1fjhA 257 1.36e+01 1fjhB c.2.1.2 29870 1fp1D 372 1.41e+01 1fpqA a.4.5.29 59939 c.66.1.12 59940 1td5A 202 1.42e+01 1nrzA 164 1.48e+01 c.38.1.1 86131 1i2sA 282 1.50e+01 e.3.1.1 71104 1v54H 85 1.51e+01 a.51.1.1 -979 1cr1A 296 1.54e+01 1cr1A c.37.1.11 32286 1gggA 226 1.55e+01 1lst c.94.1.1 35817 1ehxA 94 1.57e+01 1ehxA b.1.18.13 21950 1of8A 370 1.59e+01 c.1.10.4 -5508 1kay 381 1.62e+01 1ba1 c.55.1.1 33385 c.55.1.1 33386 1k7jA 206 1.63e+01 d.115.1.1 72103 1j3mA 129 1.71e+01 1nriA 306 1.85e+01 c.80.1.3 86123 2occH 85 1.86e+01 2occH a.51.1.1 17796 1s9rA 410 1.87e+01 unknown_sccs -10989 1o88A 353 1.92e+01 b.80.1.1 81178 1kblA 873 1.92e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1air 353 1.93e+01 1air b.80.1.1 28018 1i7nA 309 1.95e+01 c.30.1.5 83681 d.142.1.3 83682 1hnnA 282 1.96e+01 c.66.1.15 65895 1guqA 348 2.01e+01 1guqA d.13.1.2 37522 d.13.1.2 37523 1owfB 94 2.02e+01 a.55.1.1 87488 1r1dA 247 2.03e+01 unknown_sccs -8335 1f4pA 147 2.04e+01 5nul c.23.5.1 59651 1tz9A 367 2.07e+01 1dkgA 197 2.09e+01 1dkgA b.73.1.1 27812 h.1.9.1 45626 1efyA 350 2.15e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1itg 166 2.24e+01 1b9dA c.55.3.2 33661 1j5pA 253 2.28e+01 c.2.1.3 83092 d.81.1.3 71577 1ajsA 412 2.28e+01 1ajsA c.67.1.1 34276 1bjwA 382 2.30e+01 1bjwA c.67.1.1 34349 4blmA 265 2.33e+01 1btl e.3.1.1 42721 1dwkA 156 2.34e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1lopA 164 2.35e+01 2cpl b.62.1.1 27510 3daaA 277 2.36e+01 1daaA e.17.1.1 43272 1q0gA 117 2.38e+01 1ir6A 424 2.44e+01 c.107.1.2 71342 1g0oA 283 2.47e+01 1ybvA c.2.1.2 60181 1pq4A 291 2.55e+01 c.92.2.2 -8633 2fcr 173 2.59e+01 1rcf c.23.5.1 31151 1mldA 314 2.64e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1rhs 296 2.65e+01 1rhs c.46.1.2 32703 c.46.1.2 32704 1jtvA 327 2.66e+01 c.2.1.2 84230 1v8aA 265 2.69e+01 c.72.1.2 -8379 1pvdA 537 2.70e+01 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1kolA 398 2.71e+01 b.35.1.2 77474 c.2.1.1 77475 1l6wA 220 2.78e+01 c.1.10.1 73632 1jqeA 292 2.80e+01 c.66.1.19 71789 1kl7A 514 2.86e+01 c.79.1.1 72678 1hu4A 288 2.89e+01 1hu4A 1n5dA 288 2.89e+01 c.2.1.2 80030 1o17A 345 2.90e+01 a.46.2.1 80765 c.27.1.1 80766 1cs1A 386 2.95e+01 1ibjA c.67.1.3 34399 1lvoA 302 3.14e+01 b.47.1.4 74284 1knwA 425 3.15e+01 b.49.2.3 -4274 c.1.6.1 -5229 1jksA 294 3.19e+01 d.144.1.7 71710 1vfrA 218 3.19e+01 1vfrA d.90.1.1 40247 1mv8A 436 3.24e+01 a.100.1.4 85128 c.2.1.6 85129 c.26.3.1 85130 1apmE 350 3.25e+01 1cdkA d.144.1.7 41628 1ei5A 520 3.28e+01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1ewkA 490 3.38e+01 1ewkA c.93.1.1 35712 1bykA 255 3.40e+01 1bykA c.93.1.1 35706 1k1aA 241 3.40e+01 d.211.1.1 67992 1rdqE 350 3.50e+01 d.144.1.7 -11336 1r85A 379 3.51e+01 1qz9A 416 3.52e+01 c.67.1.3 -8180 2occE 109 3.56e+01 2occE a.118.11.1 19224 1p0iA 529 3.59e+01 c.69.1.1 -8291 1fa8A 135 3.63e+01 1qipA d.32.1.1 38486 1hyeA 313 3.65e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1k8kB 394 3.67e+01 c.55.1.1 68307 1ezwA 349 3.69e+01 1ezwA c.1.16.3 29558 1gv3A 248 3.71e+01 a.2.11.1 70585 d.44.1.1 70586 1ldjA 760 3.72e+01 a.4.5.34 73847 a.118.17.1 73848 e.40.1.1 73849 1eny 268 3.75e+01 1eny c.2.1.2 29910 1k1xA 659 3.76e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1k7wA 468 3.95e+01 a.127.1.1 72130 1p2fA 220 3.96e+01 a.4.6.1 87720 c.23.1.1 87721