CreatePredAlphaCost pred_alpha2k alpha11 T0267.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0267.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 3 way_back 3 dry5 15 dry6.5 25 dry8 10 dry12 5 \
	phobic_fit 2 \
	sidechain 3 \
	bystroff 5 \
	soft_clashes 30  backbone_clashes 2 \
	break 60  \
	pred_alpha2k 3 \
	pred_alpha04 6 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 15

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

# from  T0267.t04.dssp-ehl2.constraints
HelixConstraint 	L9	T26	0.6703
HelixConstraint 	E33	E37	0.6096
HelixConstraint 	Q44	L52	0.6953
HelixConstraint 	P99	W101	0.6254
HelixConstraint 	L106	A120	0.8429
HelixConstraint 	P135	H143	0.6292

StrandConstraint	R3	R5	0.722
StrandConstraint	L61	E65	0.8445
StrandConstraint	V71	G78	0.6115
StrandConstraint	A90	V97	0.7423
StrandConstraint	R125	V130	0.7254
StrandConstraint	V147	L149	0.6793
StrandConstraint	E151	E155	0.6336
StrandConstraint	W162	G167	0.6106

# from decoys/try1-opt2.sheets
SheetConstraint M1 A7	  	S68 F62  	hbond R3
SheetConstraint L61 S66  	F77 V72  	hbond L61
SheetConstraint E65 E67  	V72 E70  	hbond E67
SheetConstraint V72 A75  	L98 I95  	hbond F74
SheetConstraint T89 L92  	R125 V128  	hbond A90
SheetConstraint G124 K132  	L170 W162  	hbond M126
SheetConstraint G146 L149  	F168 A165  	hbond V147
SheetConstraint G150 L156  	A165 A159  	hbond G150