# List of top-scoring protein chains for T0267.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tiqA 180 1.42e-25 1vhsA 175 9.65e-24 d.108.1.1 -10794 1qsoA 149 8.04e-17 1qsmA d.108.1.1 40812 1qsmA 152 1.06e-16 1qsmA d.108.1.1 40808 1s3zA 165 6.30e-16 1gheA 177 1.02e-15 d.108.1.1 76222 1on0A 158 4.87e-14 d.108.1.1 87095 1ufhA 180 5.37e-14 d.108.1.1 88485 1i21A 159 5.79e-14 1i21A d.108.1.1 61549 1i12A 160 5.83e-14 1i21A d.108.1.1 61515 1i1dA 161 5.89e-14 1i21A d.108.1.1 61526 1q2yA 140 8.39e-14 d.108.1.1 -10791 1bo4A 168 9.00e-13 1bo4A d.108.1.1 40798 1mk4A 157 1.23e-12 d.108.1.1 84979 1p0hA 318 3.80e-12 d.108.1.1 -10802 1b6bA 174 2.68e-11 1cjwA d.108.1.1 40819 1cjwA 166 2.86e-11 1cjwA d.108.1.1 40818 1ib1E 200 3.23e-11 1cjwA d.108.1.1 62137 1kuxA 207 3.26e-11 d.108.1.1 73021 1qstA 160 4.32e-11 1yghA d.108.1.1 40804 1qsrA 162 4.40e-11 1yghA d.108.1.1 40805 1m1dA 163 4.41e-11 d.108.1.1 78397 5gcnA 166 4.48e-11 1yghA d.108.1.1 40807 1l0cA 207 1.60e-10 d.108.1.1 73393 1b87A 181 2.25e-10 1b87A d.108.1.1 40797 1n71A 180 2.28e-10 d.108.1.1 85370 1cm0A 168 6.42e-09 1yghA d.108.1.1 40800 1nslA 184 2.52e-08 d.108.1.1 86137 1yghA 164 6.79e-07 1yghA d.108.1.1 40802 1sqhA 312 2.58e-06 unknown_sccs -10812 1m4iA 181 1.01e-05 d.108.1.1 74457 1r57A 102 1.82e-05 d.108.1.1 -10798 1mj9A 278 1.46e-03 d.108.1.1 79190 1mjbA 278 1.89e-03 d.108.1.1 79192 1fy7A 278 1.91e-03 1fy7A d.108.1.1 40817 1mjaA 278 2.52e-03 d.108.1.1 79191 1iykA 392 3.92e-03 d.108.1.2 76958 d.108.1.2 76959 1bob 320 4.71e-03 1bob d.108.1.1 40816 1iicA 422 5.30e-01 1nmtA d.108.1.2 62422 d.108.1.2 62423 1h4yA 117 6.20e-01 1auz c.13.2.1 60628 1ml4A 308 9.93e-01 c.78.1.1 79255 c.78.1.1 79256 1o50A 157 1.36e+00 d.37.1.1 -9604 d.37.1.1 -9605 2todA 425 1.45e+00 7odcA b.49.2.3 26489 c.1.6.1 28651 1lvwA 295 1.82e+00 c.68.1.6 84723 1azvA 153 3.16e+00 1mfmA b.1.8.1 22247 4thiA 362 3.85e+00 2thiA c.94.1.1 35793 3thiA 371 3.94e+00 2thiA c.94.1.1 35792 2thiA 379 4.03e+00 2thiA c.94.1.1 35794 1dswA 153 4.09e+00 1mfmA b.1.8.1 22271 1i9zA 347 4.26e+00 1i9yA d.151.1.2 62102 1p1vA 153 4.50e+00 b.1.8.1 -2800 1k8tA 510 4.65e+00 e.41.1.1 68316 1obvA 169 5.27e+00 c.23.5.1 86782 1ukgA 252 5.35e+00 b.29.1.1 -3390 1uxlA 153 5.41e+00 b.1.8.1 -2816 1mfmA 153 5.71e+00 1mfmA b.1.8.1 22246 1hrkA 359 5.93e+00 1hrkA c.92.1.1 61228 1oezW 153 6.01e+00 b.1.8.1 86926 1budA 197 6.07e+00 1atlA d.92.1.9 40328 1jqgA 433 6.12e+00 c.56.5.1 71791 d.58.3.1 71792 1i94H 138 6.13e+00 1seiA d.140.1.1 61999 1an7A 136 6.19e+00 1seiA d.140.1.1 41465 1fjgH 138 6.25e+00 1seiA d.140.1.1 41468 1pu0A 153 6.25e+00 b.1.8.1 -2805 1hl4A 154 6.35e+00 b.1.8.1 83587 1uxmA 153 6.47e+00 b.1.8.1 -2826 1ozuA 153 6.55e+00 b.1.8.1 87630 1bswA 197 6.67e+00 1atlA d.92.1.9 40329 1h4xA 117 6.93e+00 1auz c.13.2.1 60626 1qheA 168 7.05e+00 1rcf c.23.5.1 31177 1eq2A 310 7.06e+00 1eq2A c.2.1.2 29814 1k86A 253 7.09e+00 c.17.1.1 68288 1rcf 169 7.13e+00 1rcf c.23.5.1 31170 1ihgA 370 7.28e+00 2cpl a.118.8.1 62380 b.62.1.1 62381 1lh0A 213 7.31e+00 c.61.1.1 73896 1gqfA 265 7.32e+00 c.17.1.1 65470 1k9fA 679 7.59e+00 c.1.8.10 77296 d.92.2.2 77297 1r8oA 96 7.85e+00 1aop 497 7.87e+00 2aop d.58.36.1 39501 d.58.36.1 39502 d.134.1.1 41425 d.134.1.1 41426 1np7A 489 7.96e+00 a.99.1.1 80677 c.28.1.1 80678 1havA 217 8.04e+00 1havA b.47.1.4 26423 1pk0A 507 8.08e+00 e.41.1.1 -11979 1funA 153 8.12e+00 1mfmA b.1.8.1 22259 1p1tA 104 8.29e+00 d.58.7.1 -10031 1frfS 264 8.45e+00 2frvA e.19.1.1 43312 1l3nA 153 8.57e+00 b.1.8.1 73549 1n19A 154 8.68e+00 b.1.8.1 79795 1cxc 124 8.68e+00 1ycc a.3.1.1 15890 1n18A 154 8.71e+00 b.1.8.1 79785 1sosA 154 8.76e+00 1mfmA b.1.8.1 22249 1anv 356 8.77e+00 1anv a.54.1.1 17890 g.51.1.1 45365 g.51.1.1 45371 1o99A 511 8.83e+00 c.105.1.1 81235 c.76.1.3 81236 1o98A 511 8.86e+00 c.105.1.1 86684 c.76.1.3 86685 1pbjA 125 8.86e+00 d.37.1.1 -9608 d.37.1.1 -9609 1mqpA 679 8.94e+00 c.1.8.10 -5414 d.92.2.2 -10595 1adt 356 9.02e+00 1anv a.54.1.1 17887 g.51.1.1 45362 g.51.1.1 45368 1mqrA 679 9.04e+00 c.1.8.10 -5416 d.92.2.2 -10597 1k88A 253 9.22e+00 c.17.1.1 68290 1sto 213 9.61e+00 1opr c.61.1.1 34092 1qa7A 217 9.81e+00 1havA b.47.1.4 26425 1nd1A 202 1.02e+01 d.92.1.9 -10564 1ptzA 153 1.07e+01 b.1.8.1 -2803 1l8nA 679 1.07e+01 c.1.8.10 84564 d.92.2.2 84565 1o3yA 166 1.09e+01 c.37.1.8 86618 1gylA 369 1.14e+01 1gox c.1.4.1 28610 4aig 201 1.21e+01 1atlA d.92.1.9 40318 1aorA 605 1.21e+01 1b25A a.110.1.1 19042 d.152.1.1 41794 2aigP 202 1.21e+01 1atlA d.92.1.9 40320 1o17A 345 1.26e+01 a.46.2.1 80765 c.27.1.1 80766 1umgA 362 1.35e+01 1vicA 262 1.37e+01 c.68.1.13 -8252 1b9bA 255 1.41e+01 1amk c.1.1.1 28531 1gox 370 1.46e+01 1gox c.1.4.1 28607 1al8 359 1.49e+01 1gox c.1.4.1 28608 1ny1A 240 1.50e+01 c.6.2.3 86395 2btmA 252 1.50e+01 1amk c.1.1.1 28511 1afwA 393 1.50e+01 1afwA c.95.1.1 35900 c.95.1.1 35901 1zzzA 237 1.50e+01 5ptp b.47.1.2 25892 1pxtA 390 1.51e+01 1afwA c.95.1.1 35904 c.95.1.1 35905 1d5vA 94 1.53e+01 2hfh a.4.5.14 16144 1mmg 762 1.56e+01 1lvk b.34.3.1 24579 c.37.1.9 32176 6chyA 128 1.58e+01 3chy c.23.1.1 31062 1oboA 169 1.63e+01 c.23.5.1 86776 1vlzA 128 1.64e+01 3chy c.23.1.1 31048 1d3yA 301 1.66e+01 1d3yA e.12.1.1 43252 1btmA 252 1.66e+01 1amk c.1.1.1 28513 1ogsA 497 1.71e+01 b.71.1.2 86997 c.1.8.3 86998 1fhjB 146 1.72e+01 1abwA a.1.1.2 59838 1pu1A 94 1.78e+01 1ig8A 486 1.80e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1utnA 243 1.81e+01 b.47.1.2 -4169 1mt6A 280 1.82e+01 b.76.2.1 79446 b.85.7.1 79447 1ophB 243 1.86e+01 b.47.1.2 -4131 1h3iA 293 1.89e+01 b.76.2.1 76635 b.85.7.1 76636 1njjA 425 1.89e+01 b.49.2.3 -4269 c.1.6.1 -5224 1kxjA 205 1.91e+01 c.23.16.1 73153 1f3tA 425 1.92e+01 7odcA b.49.2.3 26493 c.1.6.1 28655 1ea2A 131 1.92e+01 d.17.4.3 64860 1dbxA 158 1.94e+01 1dbuA d.116.1.1 40928 1w02A 131 1.96e+01 1i4oA 280 1.98e+01 1pauA c.17.1.1 61721 1fuiA 591 1.98e+01 1fuiA b.43.2.1 25674 c.85.1.1 35444 1n6cA 297 1.99e+01 b.76.2.1 80123 b.85.7.1 80124 1o1yA 239 2.01e+01 c.23.16.1 86554 1hlgA 371 2.08e+01 1hlgA c.69.1.6 34656 1pta 327 2.10e+01 1pscA c.1.9.3 29064 1dpmA 329 2.15e+01 1pscA c.1.9.3 29062 1c7hA 131 2.17e+01 1opy d.17.4.3 38117 1vi7A 217 2.20e+01 unknown_sccs -9115 unknown_sccs -10052 1eywA 331 2.22e+01 1pscA c.1.9.3 29057 1i0dA 332 2.22e+01 1pscA c.1.9.3 61487 1oh0A 131 2.23e+01 d.17.4.3 87004 1jgmA 336 2.24e+01 1pscA c.1.9.3 62953 1t43A 277 2.30e+01 1pscA 365 2.32e+01 1pscA c.1.9.3 29058 1qkiA 514 2.41e+01 1dpgA c.2.1.3 30080 d.81.1.5 39995 1ogxA 131 2.41e+01 d.17.4.3 87002 1cqsA 131 2.41e+01 d.17.4.3 83165 1mmn 762 2.42e+01 1lvk b.34.3.1 24582 c.37.1.9 32179 1k9vF 201 2.42e+01 c.23.16.1 68365 1mufA 257 2.43e+01 b.76.2.1 79483 b.85.7.1 79484 7ahlA 293 2.44e+01 7ahlA f.6.1.1 43812 1lvk 762 2.45e+01 1lvk b.34.3.1 24576 c.37.1.9 32173 1uufA 369 2.50e+01 b.35.1.2 -3706 c.2.1.1 -5730 1kmzA 130 2.56e+01 d.32.1.2 72759 1n11A 437 2.58e+01 d.211.1.1 79778 1o0xA 262 2.59e+01 d.127.1.1 80755 1idk 359 2.63e+01 1qcxA b.80.1.2 28025 1l8tA 263 2.66e+01 d.144.1.6 73702 1seiA 130 2.67e+01 1seiA d.140.1.1 41463 1fqiA 147 2.68e+01 1agrE a.91.1.1 18542 1b4tA 153 2.69e+01 1mfmA b.1.8.1 22283 1j7lA 264 2.70e+01 d.144.1.6 62697 1cwxA 44 2.78e+01 1cwxA j.54.1.1 46338 2ig2H 455 2.80e+01 1igtB b.1.1.1 19849 b.1.1.2 20953 1qr0A 228 2.84e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1vom 762 2.91e+01 1lvk b.34.3.1 24577 c.37.1.9 32174 1hbaB 146 2.92e+01 1abwA a.1.1.2 15497 1eysH 259 2.94e+01 6prcH b.41.1.1 25484 f.23.10.1 43517 1mma 762 2.99e+01 1lvk b.34.3.1 24587 c.37.1.9 32184 1uzbA 516 3.00e+01 c.82.1.1 -8552 1sbkA 144 3.01e+01 d.38.1.5 -9687 1quaA 197 3.01e+01 1atlA d.92.1.9 40330 1a00B 146 3.09e+01 1abwA a.1.1.2 15469 1kllA 130 3.11e+01 d.32.1.2 72720 1qpwB 146 3.12e+01 1abwA a.1.1.2 15569 1kpf 126 3.15e+01 1kpf d.13.1.1 37507 1g08B 145 3.22e+01 1abwA a.1.1.2 15559 1d0yA 761 3.23e+01 1lvk b.34.3.1 24581 c.37.1.9 32178 1fmvA 761 3.24e+01 1lvk b.34.3.1 24580 c.37.1.9 32177 1gdhA 320 3.26e+01 1gdhA c.2.1.4 30095 c.23.12.1 31355 1dmqA 131 3.28e+01 1opy d.17.4.3 38116 1f5tA 121 3.31e+01 1bi0 a.4.5.24 16203 a.76.1.1 18409 1fbvA 388 3.33e+01 2cblA a.39.1.7 17384 a.48.1.1 17778 d.93.1.1 40532 g.44.1.1 45321 1vzzA 131 3.34e+01 1k8kE 178 3.36e+01 a.148.1.1 68311 1pea 385 3.36e+01 1pea c.93.1.1 35662 1qnlA 385 3.37e+01 1pea c.93.1.1 35665 1nvtA 287 3.40e+01 c.2.1.7 86270 c.58.1.5 86271 1c7cB 146 3.42e+01 1abwA a.1.1.2 15438 1dmmA 131 3.57e+01 1opy d.17.4.3 38114 1i8kA 107 3.59e+01 b.1.1.1 71130 1l8wA 348 3.68e+01 a.154.1.1 73704 1w01A 131 3.69e+01 1j0sA 157 3.70e+01 b.42.1.2 -4016 1i0rA 169 3.72e+01 1i0rA b.45.1.2 61489 1f1dA 154 3.74e+01 b.1.8.1 76152 1ne9A 335 3.75e+01 d.108.1.4 -10805 d.108.1.4 -10806 1ciu 683 3.75e+01 1cxlA b.1.18.2 21852 b.3.1.1 22521 b.71.1.1 27759 c.1.8.1 28746 1r8sA 164 3.76e+01 c.37.1.8 -7082 1bty 229 3.77e+01 5ptp b.47.1.2 25833 1oxxK 353 3.78e+01 b.40.6.3 -3969 c.37.1.12 -7187 1gbvB 146 3.80e+01 1abwA a.1.1.2 15487 1i6uA 130 3.82e+01 d.140.1.1 61850 1gskA 513 3.83e+01 b.6.1.3 83314 b.6.1.3 83315 b.6.1.3 83316 1a0yB 146 3.93e+01 1abwA a.1.1.2 15493