# List of top-scoring protein chains for T0267.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vhsA 175 1.22e-16 d.108.1.1 -10794 1tiqA 180 5.08e-16 1nslA 184 1.44e-12 d.108.1.1 86137 1s3zA 165 3.42e-12 1on0A 158 1.15e-11 d.108.1.1 87095 1qsoA 149 1.18e-11 1qsmA d.108.1.1 40812 1ufhA 180 1.24e-11 d.108.1.1 88485 1qsmA 152 1.90e-11 1qsmA d.108.1.1 40808 1i12A 160 2.49e-11 1i21A d.108.1.1 61515 1i1dA 161 2.49e-11 1i21A d.108.1.1 61526 1i21A 159 2.51e-11 1i21A d.108.1.1 61549 1mk4A 157 4.03e-11 d.108.1.1 84979 1gheA 177 1.05e-10 d.108.1.1 76222 1bo4A 168 2.63e-10 1bo4A d.108.1.1 40798 1b87A 181 3.27e-09 1b87A d.108.1.1 40797 1n71A 180 3.37e-09 d.108.1.1 85370 1b6bA 174 5.89e-09 1cjwA d.108.1.1 40819 1cjwA 166 6.33e-09 1cjwA d.108.1.1 40818 1q2yA 140 1.04e-08 d.108.1.1 -10791 5gcnA 166 1.06e-08 1yghA d.108.1.1 40807 1m1dA 163 1.07e-08 d.108.1.1 78397 1qsrA 162 1.07e-08 1yghA d.108.1.1 40805 1qstA 160 1.08e-08 1yghA d.108.1.1 40804 1ib1E 200 1.08e-08 1cjwA d.108.1.1 62137 1kuxA 207 1.08e-08 d.108.1.1 73021 1p0hA 318 2.31e-08 d.108.1.1 -10802 1l0cA 207 3.00e-08 d.108.1.1 73393 1cm0A 168 7.71e-08 1yghA d.108.1.1 40800 1yghA 164 1.47e-06 1yghA d.108.1.1 40802 1sqhA 312 5.46e-05 unknown_sccs -10812 1r57A 102 1.39e-04 d.108.1.1 -10798 1m4iA 181 1.61e-03 d.108.1.1 74457 1iykA 392 2.16e-03 d.108.1.2 76958 d.108.1.2 76959 1bob 320 2.82e-03 1bob d.108.1.1 40816 1mj9A 278 4.88e-02 d.108.1.1 79190 1mjbA 278 5.28e-02 d.108.1.1 79192 1fy7A 278 5.29e-02 1fy7A d.108.1.1 40817 1iicA 422 5.30e-02 1nmtA d.108.1.2 62422 d.108.1.2 62423 1mjaA 278 6.39e-02 d.108.1.1 79191 1o50A 157 9.51e-01 d.37.1.1 -9604 d.37.1.1 -9605 1mifA 115 1.96e+00 1dptA d.80.1.3 39852 1pvmA 184 3.23e+00 d.37.1.1 -9612 d.37.1.1 -9613 unknown_sccs -12799 1hrkA 359 4.32e+00 1hrkA c.92.1.1 61228 1cgqA 115 6.05e+00 1dptA d.80.1.3 39843 1gifA 115 6.18e+00 1dptA d.80.1.3 39837 1vjqA 79 6.34e+00 unknown_sccs -13478 1ljtA 114 6.35e+00 d.80.1.3 78053 1p1gA 114 6.40e+00 1dptA d.80.1.3 39849 1gd0A 122 6.73e+00 1dptA d.80.1.3 39834 1kyzA 365 7.03e+00 a.4.5.29 73312 c.66.1.12 73313 1l8wA 348 8.02e+00 a.154.1.1 73704 1ogxA 131 8.09e+00 d.17.4.3 87002 1gs3A 131 8.31e+00 d.17.4.3 76327 1cqsA 131 8.41e+00 d.17.4.3 83165 1nfiE 213 8.81e+00 1iknD d.211.1.1 19172 1uhlB 242 9.17e+00 1vicA 262 9.40e+00 c.68.1.13 -8252 1od2A 805 9.61e+00 c.14.1.4 86821 c.14.1.4 86822 1uyrA 737 9.83e+00 c.14.1.4 -6258 c.14.1.4 -6259 1uyvA 737 9.89e+00 c.14.1.4 -6274 c.14.1.4 -6275 1pv5A 264 1.03e+01 unknown_sccs -10182 1dbp 271 1.12e+01 2dri c.93.1.1 35639 1dmmA 131 1.20e+01 1opy d.17.4.3 38114 1w01A 131 1.21e+01 1b9bA 255 1.23e+01 1amk c.1.1.1 28531 2dri 271 1.28e+01 2dri c.93.1.1 35637 1c7hA 131 1.29e+01 1opy d.17.4.3 38117 1e97A 131 1.32e+01 d.17.4.3 64803 1dmnA 131 1.34e+01 1opy d.17.4.3 38115 1iknD 236 1.35e+01 1iknD d.211.1.1 19171 1ea2A 131 1.37e+01 d.17.4.3 64860 1oh0A 131 1.38e+01 d.17.4.3 87004 1w02A 131 1.42e+01 1i94H 138 1.42e+01 1seiA d.140.1.1 61999 1fqiA 147 1.46e+01 1agrE a.91.1.1 18542 1fyc 106 1.49e+01 1fyc b.84.1.1 28230 1ml4A 308 1.49e+01 c.78.1.1 79255 c.78.1.1 79256 1dmqA 131 1.54e+01 1opy d.17.4.3 38116 1lvwA 295 1.55e+01 c.68.1.6 84723 1mgvA 429 1.55e+01 c.67.1.4 79107 1vzzA 131 1.59e+01 1ls5A 328 1.59e+01 b.50.1.2 74240 1s06A 429 1.64e+01 c.67.1.4 -8193 1hm9A 468 1.71e+01 b.81.1.4 65866 c.68.1.5 65867 1g97A 459 1.71e+01 1fwyA b.81.1.4 60394 c.68.1.5 60395 1dtyA 429 1.73e+01 1dtyA c.67.1.4 34495 1ux4A 410 1.75e+01 unknown_sccs -1769 1v6iA 232 1.79e+01 b.29.1.1 -3338 1s09A 429 1.79e+01 c.67.1.4 -8199 2pelA 236 1.82e+01 1led b.29.1.1 24082 1qj5A 429 1.93e+01 1dtyA c.67.1.4 34493 1i9zA 347 1.93e+01 1i9yA d.151.1.2 62102 1s0aA 429 1.93e+01 c.67.1.4 -8201 1p1tA 104 1.98e+01 d.58.7.1 -10031 1ux5A 411 1.98e+01 unknown_sccs -1768 1qb3A 150 2.14e+01 1puc d.97.1.1 40680 1pbjA 125 2.14e+01 d.37.1.1 -9608 d.37.1.1 -9609 1an7A 136 2.16e+01 1seiA d.140.1.1 41465 1fjgH 138 2.16e+01 1seiA d.140.1.1 41468 1bl0A 129 2.34e+01 1d5yA a.4.1.8 16053 a.4.1.8 16054 1drj 271 2.36e+01 2dri c.93.1.1 35642 1s08A 429 2.38e+01 c.67.1.4 -8197 1nvtA 287 2.68e+01 c.2.1.7 86270 c.58.1.5 86271 1sto 213 2.72e+01 1opr c.61.1.1 34092 1e19A 314 2.74e+01 1b7bA c.73.1.1 34967 1l8tA 263 2.80e+01 d.144.1.6 73702 1j7lA 264 2.80e+01 d.144.1.6 62697 1m72A 272 2.81e+01 c.17.1.1 -7927 1d3yA 301 2.84e+01 1d3yA e.12.1.1 43252 1lh0A 213 2.86e+01 c.61.1.1 73896 1azvA 153 2.88e+01 1mfmA b.1.8.1 22247 1dtzA 689 2.93e+01 1cb6A c.94.1.2 59134 c.94.1.2 59135 1umgA 362 3.09e+01 1s07A 429 3.10e+01 c.67.1.4 -8195 1k41A 131 3.22e+01 d.17.4.3 77252 1evlA 401 3.36e+01 1qf6A c.51.1.1 33202 d.104.1.1 40751 1np7A 489 3.39e+01 a.99.1.1 80677 c.28.1.1 80678 1seiA 130 3.44e+01 1seiA d.140.1.1 41463 1tcdA 249 3.54e+01 1amk c.1.1.1 28497 1ci1A 251 3.57e+01 1amk c.1.1.1 28499 1r8oA 96 3.59e+01 1jwhC 215 3.72e+01 g.41.4.1 71915 2btmA 252 3.79e+01 1amk c.1.1.1 28511 1jpdX 324 3.84e+01 c.1.11.2 67014 d.54.1.1 67015 2gacA 151 3.89e+01 1apyA d.153.1.5 42012 1oajA 151 3.97e+01 b.1.8.1 86738 1dswA 153 3.98e+01 1mfmA b.1.8.1 22271