# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tiqA 180 1.11e-21 1vhsA 175 9.35e-21 d.108.1.1 -10794 1nslA 184 2.56e-17 d.108.1.1 86137 1s3zA 165 9.41e-17 1qsmA 152 2.14e-16 1qsmA d.108.1.1 40808 1qsoA 149 5.58e-16 1qsmA d.108.1.1 40812 1gheA 177 1.23e-15 d.108.1.1 76222 1i12A 160 2.95e-14 1i21A d.108.1.1 61515 1on0A 158 3.07e-14 d.108.1.1 87095 1i1dA 161 3.68e-14 1i21A d.108.1.1 61526 1mk4A 157 2.72e-13 d.108.1.1 84979 1n71A 180 4.45e-13 d.108.1.1 85370 1cjwA 166 6.85e-13 1cjwA d.108.1.1 40818 1bo4A 168 2.54e-12 1bo4A d.108.1.1 40798 1qstA 160 3.07e-12 1yghA d.108.1.1 40804 1q2yA 140 7.88e-12 d.108.1.1 -10791 1p0hA 318 1.24e-11 d.108.1.1 -10802 1yghA 164 2.02e-09 1yghA d.108.1.1 40802 1sqhA 312 1.42e-08 unknown_sccs -10812 1m4iA 181 5.15e-07 d.108.1.1 74457 1bob 320 1.48e-05 1bob d.108.1.1 40816 1iicA 422 2.71e-04 1nmtA d.108.1.2 62422 d.108.1.2 62423 1fy7A 278 1.86e-03 1fy7A d.108.1.1 40817 1uyrA 737 1.97e-01 c.14.1.4 -6258 c.14.1.4 -6259 1kzfA 230 2.54e-01 d.108.1.3 73354 1ne9A 335 2.56e-01 d.108.1.4 -10805 d.108.1.4 -10806 1lrzA 426 3.83e-01 a.2.7.4 78167 d.108.1.4 78168 d.108.1.4 78169 1thm 279 4.99e-01 1gci c.41.1.1 32544 1opr 213 5.06e-01 1opr c.61.1.1 34091 1lh0A 213 8.25e-01 c.61.1.1 73896 1fwsA 267 1.09e+00 1d9eA c.1.10.4 60063 1gd0A 122 1.16e+00 1dptA d.80.1.3 39834 1pe1A 267 1.23e+00 c.1.10.4 -5553 1oroA 213 1.25e+00 1opr c.61.1.1 34093 1o50A 157 1.34e+00 d.37.1.1 -9604 d.37.1.1 -9605 1rfmA 344 1.61e+00 c.122.1.1 -8032 1vjqA 79 1.95e+00 unknown_sccs -13478 1c96A 753 2.06e+00 1amj c.8.2.1 30727 c.83.1.1 35403 8acn 754 2.61e+00 1amj c.8.2.1 30724 c.83.1.1 35400 1fxqA 267 2.66e+00 1d9eA c.1.10.4 60108 1flcA 432 2.95e+00 1flcA b.19.1.3 23837 c.23.10.2 31337 1gox 370 3.37e+00 1gox c.1.4.1 28607 1jcxA 267 3.37e+00 c.1.10.4 66510 1l1qA 186 3.38e+00 c.61.1.1 77653 1vhmA 195 3.44e+00 d.110.2.1 -10828 1tljA 213 3.53e+00 1hynP 379 3.56e+00 1hynP d.112.1.2 61408 1p5dX 463 3.84e+00 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1afwA 393 3.85e+00 1afwA c.95.1.1 35900 c.95.1.1 35901 1hfoA 113 4.64e+00 d.80.1.3 61006 1ufkA 254 4.77e+00 unknown_sccs -8103 1pvmA 184 4.78e+00 d.37.1.1 -9612 d.37.1.1 -9613 unknown_sccs -12799 1han 297 5.20e+00 1han d.32.1.3 38506 d.32.1.3 38507 1lkdA 297 5.20e+00 d.32.1.3 78059 d.32.1.3 78060 1dik 874 5.24e+00 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1h1yA 228 5.53e+00 c.1.2.2 76506 1o5oA 221 5.71e+00 c.61.1.1 -7954 1pbjA 125 5.72e+00 d.37.1.1 -9608 d.37.1.1 -9609 1k2yX 463 5.87e+00 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1uurA 473 6.42e+00 a.47.1.1 -968 b.2.5.5 -2904 d.93.1.1 -10632 1f9mA 112 6.48e+00 1erv c.47.1.1 32736 1vicA 262 6.53e+00 c.68.1.13 -8252 1oj5A 132 6.54e+00 unknown_sccs -10848 1kw3B 292 6.86e+00 d.32.1.3 77549 d.32.1.3 77550 1j8yF 297 6.89e+00 1ng1 a.24.13.1 62747 c.37.1.10 62748 1hqsA 423 7.22e+00 1iso c.77.1.1 61154 1faaA 124 7.73e+00 1erv c.47.1.1 32738 1im5A 180 7.81e+00 unknown_sccs 66211 1dar 691 7.98e+00 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1o0sA 605 8.67e+00 c.2.1.7 86540 c.58.1.3 86541 1mxgA 435 8.81e+00 b.71.1.1 85193 c.1.8.1 85194 1eu8A 409 8.98e+00 1eu8A c.94.1.1 59502 1lfwA 470 9.23e+00 c.56.5.4 77942 d.58.19.1 77943 1a53 247 9.92e+00 1a53 c.1.2.4 28564 1hgxA 183 1.00e+01 1tc1A c.61.1.1 34027 1s48A 609 1.00e+01 e.8.1.4 -11955 1qysA 106 1.03e+01 unknown_sccs -13432 1igs 248 1.06e+01 1a53 c.1.2.4 28565 1stfI 98 1.07e+01 1stfI d.17.1.2 38006 1cqxA 403 1.08e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1uehA 253 1.13e+01 c.101.1.1 -6879 1iznB 277 1.14e+01 e.43.1.2 83848 1gci 269 1.15e+01 1gci c.41.1.1 32503 1j8mF 297 1.17e+01 1ng1 a.24.13.1 62742 c.37.1.10 62743 1fjgK 129 1.17e+01 1fjfK c.55.4.1 33733 1f1xA 322 1.18e+01 d.32.1.3 83208 d.32.1.3 83209 1cr1A 296 1.18e+01 1cr1A c.37.1.11 32286 1i0rA 169 1.19e+01 1i0rA b.45.1.2 61489 1i0sA 169 1.19e+01 1i0rA b.45.1.2 61491 1hdoA 206 1.23e+01 1he2A c.2.1.2 60965 1nxuA 333 1.32e+01 c.122.1.1 86389 1pv5A 264 1.38e+01 unknown_sccs -10182 1ad3A 452 1.42e+01 1ad3A c.82.1.1 35335 1f1uA 323 1.47e+01 d.32.1.3 83200 d.32.1.3 83201 1tuhA 156 1.52e+01 1shdA 107 1.55e+01 1fmk d.93.1.1 40440 1s0uA 408 1.57e+01 b.43.3.1 -4053 b.44.1.1 -4061 c.37.1.8 -7096 1v2xA 194 1.62e+01 c.116.1.1 -6704 1rypI 222 1.65e+01 d.153.1.4 41877 1ofdA 1520 1.70e+01 b.80.4.1 86935 c.1.4.1 86936 d.153.1.1 86937 1w1kA 560 1.73e+01 1ojrA 274 1.77e+01 c.74.1.1 -8441 1lqpA 135 1.83e+01 d.32.1.2 78151 1nkiA 135 1.83e+01 d.32.1.2 -9544 1pea 385 1.83e+01 1pea c.93.1.1 35662 1h75A 81 1.85e+01 1h75A c.47.1.1 60716 1ds1A 324 1.89e+01 1drtA b.82.2.2 28127 1rypH 205 1.90e+01 d.153.1.4 41876 1idk 359 1.95e+01 1qcxA b.80.1.2 28025 1o0wA 252 2.13e+01 a.149.1.1 80751 d.50.1.1 80752 1ecfA 504 2.17e+01 1ecfB c.61.1.1 34053 d.153.1.1 41820 1rcy 151 2.17e+01 1rcy b.6.1.1 23018 1s5lO 246 2.27e+01 1seiA 130 2.35e+01 1seiA d.140.1.1 41463 1cg2A 393 2.42e+01 1cg2A c.56.5.4 33844 d.58.19.1 39360 1gteA 1025 2.42e+01 a.1.2.2 70440 c.1.4.1 70441 c.3.1.1 70442 c.4.1.1 70443 d.58.1.5 70444 1h7wA 1025 2.45e+01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1hh1A 143 2.46e+01 1gefA c.52.1.18 61036 1dd9A 338 2.46e+01 1dd9A e.13.1.1 43254 1su4A 994 2.47e+01 b.82.7.1 -4927 c.108.1.7 -6854 d.220.1.1 -11668 f.33.1.1 -12333 1cmiA 85 2.61e+01 1cmiA d.39.1.1 38551 1mc0A 368 2.62e+01 d.110.2.1 78937 d.110.2.1 78938 1r31A 428 2.67e+01 d.58.20.1 -10108 d.179.1.1 -11716 1bouB 302 2.67e+01 1bouB c.56.6.1 33859 1bmtA 246 2.81e+01 1bmtA a.46.1.1 17757 c.23.6.1 31235 1i9zA 347 2.81e+01 1i9yA d.151.1.2 62102 1oo2A 119 2.84e+01 b.3.4.1 -2925 1ireB 228 2.84e+01 b.34.4.4 76770 1ugpB 226 2.89e+01 1eulA 994 2.96e+01 1eulA 1nrgA 261 3.02e+01 b.45.1.1 80694 1gpeA 587 3.05e+01 1gpeA c.3.1.2 30387 d.16.1.1 37951 1m7yA 435 3.08e+01 c.67.1.4 78761 1eexA 554 3.10e+01 1dioA c.1.19.3 29650 1r72A 211 3.11e+01 unknown_sccs -215 unknown_sccs -5981 1nvmA 345 3.12e+01 a.5.7.1 86249 c.1.10.5 86250 1an9A 340 3.23e+01 1an9A c.4.1.2 30617 d.16.1.3 37904 1vk9A 151 3.25e+01 1pii 452 3.27e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1knqA 175 3.35e+01 c.37.1.17 72786 2pia 321 3.36e+01 2pia b.43.4.2 25663 c.25.1.2 31553 d.15.4.2 37704 1un8A 552 3.42e+01 unknown_sccs -1942 c.32.1.2 -6792 d.79.2.2 -10401 1ne6A 283 3.43e+01 b.82.3.2 -4918 b.82.3.2 -4919 1isiA 265 3.44e+01 e.4.1.1 71394 1gsa 316 3.48e+01 1gsa c.30.1.3 31718 d.142.1.1 41477 1l3kA 196 3.55e+01 d.58.7.1 73539 d.58.7.1 73540 1usgA 346 3.61e+01 c.93.1.1 -8635 1kpf 126 3.63e+01 1kpf d.13.1.1 37507 2polA 366 3.67e+01 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 1jvbA 347 3.75e+01 b.35.1.2 77181 c.2.1.1 77182 1r62A 160 3.75e+01 1fsgA 233 3.78e+01 1qk3A c.61.1.1 34029 1vh7A 265 3.80e+01 c.1.2.1 -5159 1shbA 104 3.81e+01 1fmk d.93.1.1 40425 1rypA 243 3.83e+01 1pmaA d.153.1.4 41932 1vhoA 346 3.89e+01 unknown_sccs -4283 c.56.5.4 -7893 1oaoA 674 3.91e+01 e.26.1.2 86744 1fxlA 167 3.91e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1b8bA 605 3.99e+01 1b8bA