# List of top-scoring protein chains for T0266.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dbxA 158 2.03e-21 1dbuA d.116.1.1 40928 1vkiA 181 3.72e-13 1vjfA 180 3.86e-12 d.116.1.1 -10941 3eipA 84 3.26e+00 3eipA d.26.2.1 38434 1e44A 85 3.28e+00 3eipA d.26.2.1 59219 1n97A 389 3.62e+00 a.104.1.1 80335 1dc1A 323 4.12e+00 1dc1A c.52.1.11 33321 1qq2A 199 5.95e+00 1qq2A c.47.1.10 33064 1l7pA 211 7.27e+00 c.108.1.4 73670 1l7mA 211 7.27e+00 c.108.1.4 73664 1j97A 211 7.27e+00 1f5sA c.108.1.4 62753 1frvB 536 8.71e+00 1h2rL e.18.1.1 43296 1iruD 248 9.20e+00 d.153.1.4 71355 2frvB 536 9.22e+00 1h2rL e.18.1.1 43291 1dq3A 454 9.28e+00 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1dgkN 917 1.07e+01 1qhaA c.55.1.3 33487 c.55.1.3 33488 c.55.1.3 33489 c.55.1.3 33490 1j0aA 325 1.11e+01 c.79.1.1 83871 1czaN 917 1.25e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1hkbA 917 1.25e+01 1qhaA c.55.1.3 33479 c.55.1.3 33480 c.55.1.3 33481 c.55.1.3 33482 1apmE 350 1.26e+01 1cdkA d.144.1.7 41628 1jbpE 350 1.28e+01 1cdkA d.144.1.7 62849 1l3rE 350 1.29e+01 d.144.1.7 73552 1rdqE 350 1.29e+01 d.144.1.7 -11336 1b12A 248 1.33e+01 1b12A b.87.1.2 28388 1kn9A 249 1.33e+01 b.87.1.2 68699 1t7dA 250 1.33e+01 1dciA 275 1.34e+01 1dciA c.14.1.3 30918 1ehxA 94 1.53e+01 1ehxA b.1.18.13 21950 1rraA 124 1.53e+01 7rsa d.5.1.1 37277 5pal 109 1.81e+01 1a75A a.39.1.4 17215 1qhaA 917 1.88e+01 1qhaA c.55.1.3 33467 c.55.1.3 33468 c.55.1.3 33469 c.55.1.3 33470 1at0 145 1.93e+01 1at0 b.86.1.1 28374 1mat 264 1.93e+01 1c24A d.127.1.1 41152 1c24A 263 1.95e+01 1c24A d.127.1.1 41148 2matA 264 1.95e+01 1c24A d.127.1.1 41146 3matA 265 1.95e+01 1c24A d.127.1.1 41149 4matA 278 2.01e+01 1c24A d.127.1.1 41150 1izcA 339 2.06e+01 c.1.12.5 83838 1v2dA 381 2.14e+01 1t0qC 86 2.23e+01 1a8rA 221 2.33e+01 1a8rA d.96.1.1 40587 1vj1A 363 2.42e+01 b.35.1.2 -3728 c.2.1.1 -5752 1mgtA 174 2.66e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1n0hA 677 2.87e+01 c.31.1.3 79734 c.36.1.5 79735 c.36.1.9 79736 1jscA 630 2.88e+01 c.31.1.3 67224 c.36.1.5 67225 c.36.1.9 67226 1viuA 203 3.07e+01 d.113.1.1 -10889 1qahA 136 3.12e+01 d.79.1.1 -10377 1ki6A 331 3.19e+01 1qhiA c.37.1.1 31876 1e2lA 331 3.21e+01 1qhiA c.37.1.1 31872 1e2kA 331 3.21e+01 1qhiA c.37.1.1 31854 1e2jA 331 3.22e+01 1qhiA c.37.1.1 31874 1oj7A 408 3.23e+01 1p7cA 343 3.24e+01 c.37.1.1 -6980 2ki5A 366 3.27e+01 1qhiA c.37.1.1 31862 1qhiA 366 3.27e+01 1qhiA c.37.1.1 31860 1of1A 376 3.29e+01 1aq6A 253 3.38e+01 1qq5A c.108.1.1 43331 1qq5A 253 3.40e+01 1qq5A c.108.1.1 43327 1qq7A 253 3.40e+01 1qq5A c.108.1.1 43329 1i51A 148 3.41e+01 c.17.1.1 66029 1ouwA 152 3.41e+01 b.77.3.1 -4759 1qlmA 316 3.55e+01 1qlmA d.147.1.1 41765 1as6A 343 3.60e+01 1nif b.6.1.3 23090 b.6.1.3 23091 1npnA 343 3.60e+01 b.6.1.3 85965 b.6.1.3 85966 1ntd 343 3.62e+01 1nif b.6.1.3 23088 b.6.1.3 23089 1qu9A 128 3.66e+01 1qu9A d.79.1.1 39755 1o4vA 183 3.70e+01 c.23.8.1 86628 1d4cA 572 3.72e+01 1qjdA a.138.1.3 19698 c.3.1.4 30435 d.168.1.1 42318 1oniA 138 3.73e+01 d.79.1.1 87144 1d4dA 572 3.74e+01 1qjdA a.138.1.3 19702 c.3.1.4 30439 d.168.1.1 42322 1mijA 152 3.85e+01 a.4.1.1 79150