# This file is the result of combining several RDB files, specifically # T0266.t04.dssp-ebghstl.rdb (weight 1.53986) # T0266.t04.stride-ebghtl.rdb (weight 1.24869) # T0266.t04.str2.rdb (weight 1.54758) # T0266.t04.alpha.rdb (weight 0.659012) # These files were combined by translating their predictions into EHL # predictions with tables generated by compare-real, and then combining # those predictions with weights proportional to their mutual information # with the EHL alphabet. The comments from the individual files follow. # # Comments from T0266.t04.dssp-ebghstl.rdb # ============================================ # TARGET T0266 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0266.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 307 # # ============================================ # Comments from T0266.t04.stride-ebghtl.rdb # ============================================ # TARGET T0266 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0266.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 307 # # ============================================ # Comments from T0266.t04.str2.rdb # ============================================ # TARGET T0266 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0266.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 307 # # ============================================ # Comments from T0266.t04.alpha.rdb # ============================================ # TARGET T0266 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-alpha-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 ABCDEFGHIST ) # The input amino acid frequencies were determined from # alignment T0266.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 307 # # ============================================ Pos AA E H C 10N 1S 5N 5N 5N 1 M 0.0543 0.1904 0.7553 2 L 0.0220 0.7242 0.2538 3 E 0.0161 0.8847 0.0991 4 K 0.0207 0.8862 0.0931 5 V 0.0087 0.9427 0.0486 6 E 0.0069 0.9524 0.0407 7 E 0.0050 0.9579 0.0371 8 W 0.0047 0.9594 0.0359 9 I 0.0047 0.9585 0.0367 10 K 0.0050 0.9491 0.0459 11 A 0.0068 0.9084 0.0847 12 R 0.0437 0.3910 0.5653 13 G 0.0419 0.0186 0.9395 14 L 0.0710 0.0101 0.9189 15 T 0.1789 0.0225 0.7985 16 W 0.6705 0.0272 0.3023 17 R 0.8290 0.0141 0.1569 18 L 0.9131 0.0064 0.0805 19 L 0.9010 0.0055 0.0936 20 I 0.8724 0.0066 0.1210 21 M 0.6720 0.0111 0.3169 22 Q 0.3385 0.0212 0.6403 23 K 0.1121 0.0214 0.8664 24 P 0.0564 0.0702 0.8734 25 T 0.0479 0.0736 0.8785 26 R 0.0867 0.1135 0.7998 27 T 0.1265 0.2627 0.6109 28 V 0.0073 0.9405 0.0522 29 A 0.0047 0.9609 0.0345 30 E 0.0046 0.9617 0.0337 31 A 0.0046 0.9616 0.0338 32 A 0.0047 0.9610 0.0344 33 A 0.0048 0.9564 0.0387 34 L 0.0055 0.9346 0.0599 35 L 0.0448 0.4752 0.4800 36 G 0.0428 0.0226 0.9346 37 V 0.0608 0.0096 0.9296 38 S 0.0627 0.0089 0.9284 39 E 0.0054 0.8710 0.1237 40 S 0.0100 0.8530 0.1370 41 E 0.0195 0.8528 0.1277 42 I 0.2431 0.5635 0.1933 43 V 0.5239 0.2696 0.2066 44 K 0.7275 0.1387 0.1338 45 T 0.8662 0.0356 0.0982 46 L 0.8836 0.0286 0.0878 47 I 0.9086 0.0145 0.0769 48 V 0.9162 0.0073 0.0765 49 L 0.8960 0.0085 0.0955 50 D 0.6032 0.0364 0.3604 51 N 0.0568 0.1004 0.8428 52 A 0.0518 0.0272 0.9210 53 G 0.0477 0.0303 0.9221 54 G 0.2812 0.0097 0.7091 55 V 0.8399 0.0033 0.1568 56 Y 0.9062 0.0076 0.0862 57 A 0.9314 0.0034 0.0653 58 V 0.9329 0.0033 0.0638 59 V 0.9267 0.0034 0.0699 60 I 0.8253 0.0060 0.1687 61 P 0.3298 0.0210 0.6493 62 G 0.0769 0.0617 0.8614 63 D 0.0857 0.1129 0.8014 64 K 0.0852 0.1750 0.7397 65 R 0.3465 0.1174 0.5361 66 L 0.4735 0.0427 0.4837 67 N 0.2047 0.0323 0.7630 68 I 0.0071 0.9242 0.0687 69 N 0.0051 0.9536 0.0413 70 S 0.0049 0.9546 0.0405 71 M 0.0050 0.9517 0.0433 72 K 0.0060 0.9490 0.0451 73 E 0.0062 0.9376 0.0562 74 L 0.0124 0.8758 0.1118 75 A 0.0541 0.6099 0.3361 76 G 0.0231 0.0879 0.8890 77 K 0.0531 0.0140 0.9329 78 P 0.1099 0.0223 0.8678 79 V 0.3000 0.0458 0.6542 80 R 0.5340 0.0674 0.3985 81 L 0.6212 0.0525 0.3263 82 A 0.3756 0.0190 0.6054 83 R 0.1292 0.0131 0.8577 84 A 0.0050 0.9383 0.0567 85 N 0.0047 0.9560 0.0393 86 E 0.0050 0.9537 0.0412 87 V 0.0048 0.9574 0.0378 88 V 0.0052 0.9515 0.0433 89 E 0.0061 0.9326 0.0613 90 L 0.0124 0.8688 0.1188 91 T 0.0517 0.5152 0.4330 92 G 0.0447 0.0452 0.9101 93 Y 0.0709 0.0138 0.9153 94 P 0.1188 0.0250 0.8562 95 V 0.1957 0.1003 0.7040 96 G 0.2066 0.0784 0.7150 97 G 0.2620 0.0586 0.6794 98 V 0.2531 0.0406 0.7063 99 P 0.1651 0.0566 0.7783 100 P 0.1230 0.2737 0.6032 101 V 0.1321 0.2712 0.5967 102 A 0.1642 0.2085 0.6272 103 L 0.1543 0.0444 0.8013 104 P 0.0713 0.0326 0.8961 105 P 0.0243 0.1048 0.8708 106 N 0.0406 0.0483 0.9111 107 I 0.2117 0.0130 0.7753 108 V 0.6430 0.0081 0.3489 109 L 0.9195 0.0051 0.0754 110 V 0.9175 0.0099 0.0726 111 V 0.8646 0.0228 0.1125 112 D 0.4617 0.0669 0.4713 113 R 0.0777 0.5464 0.3759 114 I 0.0634 0.6942 0.2424 115 L 0.0375 0.7216 0.2409 116 L 0.0547 0.5760 0.3693 117 S 0.0531 0.3198 0.6270 118 R 0.0953 0.1521 0.7526 119 K 0.0560 0.1493 0.7947 120 K 0.3567 0.0969 0.5464 121 V 0.7863 0.0374 0.1763 122 Y 0.8545 0.0131 0.1323 123 G 0.7130 0.0214 0.2656 124 G 0.4714 0.0206 0.5080 125 G 0.2523 0.0524 0.6953 126 G 0.1363 0.0542 0.8095 127 R 0.1612 0.0908 0.7480 128 E 0.1310 0.1199 0.7491 129 N 0.1882 0.0822 0.7296 130 A 0.5394 0.0228 0.4378 131 L 0.8257 0.0075 0.1668 132 L 0.8984 0.0048 0.0968 133 E 0.9051 0.0042 0.0907 134 F 0.7971 0.0071 0.1959 135 S 0.3604 0.0069 0.6327 136 P 0.0133 0.8706 0.1161 137 R 0.0059 0.9291 0.0650 138 E 0.0066 0.9344 0.0590 139 L 0.0083 0.9289 0.0629 140 V 0.0113 0.9025 0.0861 141 E 0.0139 0.8130 0.1730 142 A 0.0347 0.6117 0.3536 143 T 0.0667 0.3815 0.5518 144 G 0.0720 0.1069 0.8211 145 A 0.1698 0.0807 0.7495 146 V 0.4694 0.0633 0.4673 147 V 0.7647 0.0465 0.1888 148 A 0.7114 0.0382 0.2504 149 D 0.6951 0.0272 0.2777 150 V 0.4421 0.0775 0.4804 151 S 0.2273 0.0840 0.6887 152 E 0.1124 0.0900 0.7976