# List of top-scoring protein chains for T0266.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dbxA 158 4.16e-24 1dbuA d.116.1.1 40928 1vjfA 180 1.64e-17 d.116.1.1 -10941 1vkiA 181 1.01e-16 1qq2A 199 4.63e-01 1qq2A c.47.1.10 33064 1f9kA 238 1.33e+00 1led b.29.1.1 59741 1j97A 211 2.61e+00 1f5sA c.108.1.4 62753 1l7pA 211 2.61e+00 c.108.1.4 73670 1l7mA 211 2.62e+00 c.108.1.4 73664 1iz3A 349 3.00e+00 b.82.2.6 83831 1pznA 349 3.00e+00 a.60.4.1 -1020 c.37.1.11 -7145 1h2kA 349 3.47e+00 b.82.2.6 76572 1mzeA 351 3.47e+00 b.82.2.6 79694 1iruD 248 4.59e+00 d.153.1.4 71355 1dgkN 917 4.61e+00 1qhaA c.55.1.3 33487 c.55.1.3 33488 c.55.1.3 33489 c.55.1.3 33490 1n97A 389 5.04e+00 a.104.1.1 80335 1t0lA 414 5.12e+00 1dc1A 323 5.36e+00 1dc1A c.52.1.11 33321 1us7B 265 5.67e+00 unknown_sccs -1518 1tia 279 6.40e+00 3tgl c.69.1.17 34737 1hkbA 917 6.41e+00 1qhaA c.55.1.3 33479 c.55.1.3 33480 c.55.1.3 33481 c.55.1.3 33482 1czaN 917 6.41e+00 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 1rraA 124 6.59e+00 7rsa d.5.1.1 37277 1wblA 241 6.67e+00 1led b.29.1.1 24052 1wbfA 242 7.10e+00 1led b.29.1.1 24050 1d4dA 572 8.28e+00 1qjdA a.138.1.3 19702 c.3.1.4 30439 d.168.1.1 42322 1d4cA 572 8.48e+00 1qjdA a.138.1.3 19698 c.3.1.4 30435 d.168.1.1 42318 1eqpA 394 8.70e+00 1cz1A c.1.8.3 28812 1eqcA 394 8.77e+00 1cz1A c.1.8.3 28811 1dciA 275 8.78e+00 1dciA c.14.1.3 30918 5pal 109 9.72e+00 1a75A a.39.1.4 17215 1t7dA 250 9.84e+00 1kn9A 249 9.85e+00 b.87.1.2 68699 1qhaA 917 9.97e+00 1qhaA c.55.1.3 33467 c.55.1.3 33468 c.55.1.3 33469 c.55.1.3 33470 1b12A 248 1.00e+01 1b12A b.87.1.2 28388 1i5pA 633 1.05e+01 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1rlkA 117 1.15e+01 unknown_sccs -7526 1k0sA 151 1.18e+01 b.40.7.1 67969 1fjjA 159 1.26e+01 1fjjA b.17.1.2 59852 1vi3A 170 1.28e+01 b.17.1.2 -3066 1djrD 103 1.50e+01 3chbD b.40.2.1 24865 1j0aA 325 1.55e+01 c.79.1.1 83871 1bak 119 1.68e+01 1bak b.55.1.1 26973 1jscA 630 1.73e+01 c.31.1.3 67224 c.36.1.5 67225 c.36.1.9 67226 1n0hA 677 1.73e+01 c.31.1.3 79734 c.36.1.5 79735 c.36.1.9 79736 1qy9A 297 1.77e+01 1sdjA 310 1.80e+01 d.21.1.2 -9420 d.21.1.2 -9421 1qyaA 307 1.80e+01 1ksr 100 1.88e+01 1qfhA b.1.18.10 21897 1c0aA 585 1.89e+01 1c0aA b.40.4.1 25246 d.74.4.1 39731 d.104.1.1 40767 1il2A 590 1.90e+01 b.40.4.1 66193 d.74.4.1 66194 d.104.1.1 66195 1ehxA 94 1.94e+01 1ehxA b.1.18.13 21950 1jqvA 311 2.09e+01 c.1.4.1 -5180 1qztA 333 2.11e+01 1a8rA 221 2.15e+01 1a8rA d.96.1.1 40587 1mgpA 313 2.22e+01 c.119.1.1 79098 1p2xA 159 2.30e+01 1q14A 361 2.34e+01 c.31.1.5 -6777 1o7kA 131 2.35e+01 d.189.1.1 81144 1v2dA 381 2.36e+01 1dxqA 273 2.42e+01 1d4aA c.23.5.3 31213 1bco 327 2.47e+01 1bco b.48.1.1 26431 c.55.3.3 33676 1mijA 152 2.48e+01 a.4.1.1 79150 1qmvA 197 2.52e+01 1qq2A c.47.1.10 33066 1t0qC 86 2.54e+01 1ubkL 534 2.55e+01 e.18.1.1 88422 1f99A 162 2.57e+01 1cpcA a.1.1.3 59722 2pooA 355 2.58e+01 1qlgA b.68.3.1 27626 1qlmA 316 2.58e+01 1qlmA d.147.1.1 41765 1h2rL 534 2.59e+01 1h2rL e.18.1.1 43298 1g5hA 454 2.59e+01 1g5hA c.51.1.1 60270 d.104.1.1 60271 1rjvA 110 2.63e+01 1h2aL 567 2.66e+01 1h2rL e.18.1.1 43299 1as6A 343 2.71e+01 1nif b.6.1.3 23090 b.6.1.3 23091 1hqz1 141 2.72e+01 1npnA 343 2.72e+01 b.6.1.3 85965 b.6.1.3 85966 1dgsA 667 2.77e+01 1dgsA a.60.2.2 17963 b.40.4.6 25365 d.142.2.2 41581 1ntd 343 2.77e+01 1nif b.6.1.3 23088 b.6.1.3 23089 1qlgA 355 2.82e+01 1qlgA b.68.3.1 27627 1h6lA 353 2.83e+01 b.68.3.1 60687 1p9nA 170 2.84e+01 c.37.1.10 87997 1np6A 174 2.87e+01 c.37.1.10 85954 1jrbA 311 2.90e+01 c.1.4.1 -5184 2mobA 138 2.92e+01 1ckv d.137.1.1 41453 1i4zA 114 2.92e+01 2mhr a.24.4.1 61746 1jubA 311 2.98e+01 c.1.4.1 -5188 1jueA 311 3.01e+01 c.1.4.1 -5190 1ha7A 162 3.04e+01 a.1.1.3 70935 1dkgD 383 3.05e+01 1ba1 c.55.1.1 33427 c.55.1.1 33428 1l9oA 341 3.06e+01 b.6.1.3 77828 b.6.1.3 77829 1j9qA 341 3.07e+01 1nif b.6.1.3 62765 b.6.1.3 62766 1l9pA 341 3.07e+01 b.6.1.3 77834 b.6.1.3 77835 1l9tA 341 3.07e+01 b.6.1.3 77858 b.6.1.3 77859 1l9rA 341 3.07e+01 b.6.1.3 77846 b.6.1.3 77847 1l9sA 341 3.07e+01 b.6.1.3 77852 b.6.1.3 77853 1l9qA 341 3.07e+01 b.6.1.3 77840 b.6.1.3 77841 1et8A 341 3.08e+01 1nif b.6.1.3 23072 b.6.1.3 23073 1snrA 341 3.08e+01 1et7A 341 3.08e+01 1nif b.6.1.3 23070 b.6.1.3 23071 1gh0A 162 3.11e+01 1cpcA a.1.1.3 60491 1mg5A 255 3.15e+01 c.2.1.2 -5808 1p85I 123 3.26e+01 i.1.1.1 87878 1snq 149 3.28e+01 1snc b.40.1.1 24844 1vkdA 338 3.33e+01 1p5sA 203 3.38e+01 a.40.1.1 -900 1fouA 309 3.39e+01 1fouA e.27.1.1 43364 1vj1A 363 3.40e+01 b.35.1.2 -3728 c.2.1.1 -5752 1snm 149 3.45e+01 1snc b.40.1.1 24822 1v9pA 584 3.56e+01 a.60.2.2 -1017 b.40.4.6 -3952 d.142.2.2 -11248 1i4yA 114 3.58e+01 2mhr a.24.4.1 61738 1i0rA 169 3.60e+01 1i0rA b.45.1.2 61489 1bg3A 918 3.87e+01 1qhaA c.55.1.3 33491 c.55.1.3 33492 c.55.1.3 33493 c.55.1.3 33494 1q1hA 110 3.88e+01 unknown_sccs -262 1e3jA 352 3.95e+01 1e3jA b.35.1.2 24765 c.2.1.1 29781