# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dbxA 158 3.51e-20 1dbuA d.116.1.1 40928 1vjfA 180 5.40e-15 d.116.1.1 -10941 1vkiA 181 2.68e-14 1h2kA 349 2.22e-01 b.82.2.6 76572 1izcA 339 4.10e-01 c.1.12.5 83838 1o5oA 221 5.33e-01 c.61.1.1 -7954 1k0iA 394 1.30e+00 c.3.1.2 67942 d.16.1.2 67943 1a8y 367 1.49e+00 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1pyoA 167 1.93e+00 c.17.1.1 -7932 1gudA 288 1.98e+00 c.93.1.1 83326 1pbe 394 2.13e+00 1pbe c.3.1.2 30338 d.16.1.2 37869 1l7mA 211 2.14e+00 c.108.1.4 73664 1nnlA 225 2.38e+00 c.108.1.4 85906 1np6A 174 2.47e+00 c.37.1.10 85954 1nv8A 284 2.64e+00 c.66.1.30 86224 1j0fA 100 3.01e+00 unknown_sccs -7483 1914 232 3.06e+00 1914 d.49.1.1 83028 d.49.1.1 83029 1j97A 211 3.30e+00 1f5sA c.108.1.4 62753 1t1vA 93 3.43e+00 1n97A 389 3.78e+00 a.104.1.1 80335 1nmeA 146 4.22e+00 c.17.1.1 85874 1dc1A 323 4.30e+00 1dc1A c.52.1.11 33321 1i58A 189 4.44e+00 1b3qA d.122.1.3 61773 1rpjA 288 4.57e+00 2dri c.93.1.1 35656 1nrjA 158 4.73e+00 d.110.4.4 86124 1l1qA 186 4.90e+00 c.61.1.1 77653 1o4vA 183 5.01e+00 c.23.8.1 86628 1srrA 124 6.50e+00 1dz3A c.23.1.1 31110 1oniA 137 6.90e+00 d.79.1.1 87144 1dleA 298 7.02e+00 1dleA b.47.1.2 26312 1ng4A 390 7.18e+00 c.3.1.2 85666 d.16.1.3 85667 1i2aA 219 7.25e+00 e.24.1.1 -12012 1qahA 136 7.56e+00 d.79.1.1 -10377 1dekA 241 7.82e+00 1dekA c.37.1.1 31842 1m6sA 347 8.69e+00 c.67.1.1 78701 1jg8A 347 8.70e+00 1jg8A c.67.1.1 62946 1lt5D 103 8.86e+00 3chbD b.40.2.1 24875 1qu9A 128 9.65e+00 1qu9A d.79.1.1 39755 1dabA 539 9.79e+00 1dabA b.80.1.7 28049 1rf6A 427 9.91e+00 d.68.2.2 -10314 1efvB 255 9.93e+00 1efvB c.26.2.3 31634 1i5pA 633 9.94e+00 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1pz1A 333 1.04e+01 c.1.7.1 -5255 1fs7A 485 1.05e+01 1qdbA a.138.1.3 19691 1djrD 103 1.08e+01 3chbD b.40.2.1 24865 2hlcA 230 1.09e+01 5ptp b.47.1.2 26074 1f3aA 222 1.10e+01 1pgtA a.45.1.1 17701 c.47.1.5 32995 2sas 185 1.11e+01 2sas a.39.1.5 17258 1hu4A 288 1.14e+01 1hu4A 1n5dA 288 1.14e+01 c.2.1.2 80030 1p57B 255 1.18e+01 b.47.1.2 -4248 1ijgA 309 1.19e+01 1fouA e.27.1.1 62493 1d2mA 665 1.23e+01 1d2mA c.37.1.19 32417 c.37.1.19 32418 1gz8A 299 1.24e+01 d.144.1.7 83405 1i74A 309 1.27e+01 1i74A c.107.1.1 61867 1k6dA 220 1.28e+01 unknown_sccs 72082 1l2lA 457 1.29e+01 c.72.1.3 77656 1vicA 262 1.32e+01 c.68.1.13 -8252 1sh0A 510 1.32e+01 e.8.1.4 -11949 1q44A 326 1.33e+01 c.37.1.5 -7037 1bif 469 1.38e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1vi2A 300 1.40e+01 c.2.1.7 -5960 c.58.1.5 -6366 1mx3A 347 1.45e+01 c.2.1.4 79638 c.23.12.1 79639 1r3sA 367 1.52e+01 c.1.22.1 -5648 1omwA 689 1.53e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1uroA 367 1.55e+01 1uroA c.1.22.1 29675 1f2rI 100 1.57e+01 1c9fA d.15.2.1 37641 1o58A 303 1.59e+01 c.79.1.1 -8503 1kngA 156 1.60e+01 c.47.1.10 72777 1t3uA 104 1.60e+01 unknown_sccs -9325 1nd7A 374 1.63e+01 d.148.1.1 -11394 1b7gO 340 1.63e+01 1b7gO c.2.1.3 29992 d.81.1.1 39907 1fxlA 167 1.65e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 7odcA 424 1.68e+01 7odcA b.49.2.3 26488 c.1.6.1 28650 1q5yA 85 1.70e+01 unknown_sccs -10081 1a8rA 221 1.71e+01 1a8rA d.96.1.1 40587 1jykA 254 1.73e+01 c.68.1.13 67458 1qmvA 197 1.73e+01 1qq2A c.47.1.10 33066 1rwyA 109 1.73e+01 a.39.1.4 -825 1hcl 298 1.73e+01 1hcl d.144.1.7 41593 1mb3A 124 1.74e+01 c.23.1.1 78907 1ako 268 1.78e+01 1ako d.151.1.1 41779 1dkuA 317 1.78e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1ktgA 138 1.81e+01 d.113.1.1 72972 1oi7A 288 1.86e+01 c.2.1.8 87049 c.23.4.1 87050 1a7s 221 1.86e+01 1a7s b.47.1.2 26284 1edg 380 1.87e+01 1edg c.1.8.3 28807 1vkfA 188 1.88e+01 1regX 122 1.90e+01 1regX d.58.27.1 39406 1ku3A 73 1.92e+01 a.4.13.2 73000 2tpsA 227 1.94e+01 2tpsA c.1.3.1 28591 1q1aA 289 1.96e+01 c.31.1.5 -6781 1c4oA 664 2.00e+01 1d2mA c.37.1.19 32415 c.37.1.19 32416 1cfb 205 2.01e+01 1cfb b.1.2.1 21991 b.1.2.1 21992 1h75A 81 2.06e+01 1h75A c.47.1.1 60716 5pal 109 2.11e+01 1a75A a.39.1.4 17215 1bmqA 167 2.14e+01 1pauA c.17.1.1 30998 1k0sA 151 2.19e+01 b.40.7.1 67969 1ckv 141 2.36e+01 1ckv d.137.1.1 41452 1ehxA 94 2.44e+01 1ehxA b.1.18.13 21950 1gewA 356 2.46e+01 1gewA c.67.1.1 60470 1nnwA 252 2.46e+01 d.159.1.5 80674 1b25A 619 2.46e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1oaa 259 2.48e+01 1oaa c.2.1.2 29829 1pjjA 271 2.49e+01 1nnjA 271 2.49e+01 a.156.1.2 80669 b.113.1.1 80670 g.39.1.8 80671 1v32A 101 2.55e+01 a.42.1.1 -912 1ok7A 366 2.57e+01 1vjoA 393 2.57e+01 c.67.1.3 -8173 1iujA 106 2.58e+01 unknown_sccs -9953 1nox 205 2.60e+01 1nox d.90.1.1 40242 1v7rA 186 2.68e+01 c.51.4.1 -7546 1rthA 560 2.69e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 1ovnA 248 2.69e+01 a.71.1.1 -1096 c.47.1.7 -7477 1st9A 143 2.70e+01 c.47.1.10 -7503 1b78A 193 2.70e+01 1b78A c.51.4.1 33221 1n9eA 787 2.74e+01 b.30.2.1 -3529 d.17.2.1 -9278 d.17.2.1 -9279 1kqwA 134 2.75e+01 b.60.1.2 72887 1o6dA 163 2.91e+01 c.116.1.3 -6689 1v02A 565 2.91e+01 1o2dA 371 2.95e+01 e.22.1.2 86591 1fxjA 331 2.95e+01 1fwyA b.81.1.4 28062 c.68.1.5 34520 1rlkA 117 2.98e+01 unknown_sccs -7526 1qczA 169 2.99e+01 1qczA c.23.8.1 31276 1v2yA 105 2.99e+01 d.15.1.1 -9148 1iloA 77 2.99e+01 c.47.1.1 66205 1vhsA 175 3.11e+01 d.108.1.1 -10794 1d2fA 390 3.22e+01 1d2fA c.67.1.3 34411 1h65A 270 3.23e+01 c.37.1.8 65640 1frrA 95 3.24e+01 1awd d.15.4.1 37674 1czpA 98 3.24e+01 1awd d.15.4.1 37645 1v84A 253 3.25e+01 1pufB 73 3.44e+01 a.4.1.1 -192 1m6eX 359 3.49e+01 unknown_sccs -8071 1j08A 226 3.51e+01 c.47.1.2 83855 c.47.1.2 83856 1axdA 209 3.52e+01 1gnwA a.45.1.1 17730 c.47.1.5 33024 3chbD 104 3.52e+01 3chbD b.40.2.1 24970 1t5jA 313 3.55e+01 unknown_sccs -1951 1o0uA 429 3.59e+01 c.118.1.1 80743 1m1fA 110 3.61e+01 b.34.6.2 78401 1j5pA 253 3.63e+01 c.2.1.3 83092 d.81.1.3 71577 1aba 87 3.63e+01 1aba c.47.1.1 32760 1whi 122 3.65e+01 1whi b.39.1.1 24810 1ev0A 58 3.65e+01 1ev0A d.71.1.1 39594 1b72B 87 3.65e+01 1akhA a.4.1.1 16001 1to6A 371 3.66e+01 1gy8A 397 3.72e+01 c.2.1.2 83376 1k07A 263 3.74e+01 d.157.1.1 77218 1rkuA 206 3.78e+01 unknown_sccs -6823 4pgaA 337 3.79e+01 4pgaA c.88.1.1 35565 1qyaA 307 3.81e+01 1kq6A 141 3.86e+01 d.189.1.1 -9926 1fg7A 356 3.87e+01 1gewA c.67.1.1 59819 1pymA 295 3.95e+01 1pymA c.1.12.7 29308 1awd 94 3.97e+01 1awd d.15.4.1 37673 1mjhA 162 3.97e+01 1mjhA c.26.2.4 31639 1n7oA 721 3.99e+01 a.102.3.2 80259 b.24.1.1 80260 b.30.5.2 80261 1wdnA 226 3.99e+01 1lst c.94.1.1 35816