# TARGET T0265 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0265.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 269 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.008 0.004 0.002 0.276 0.135 0.575 2 M 0.017 0.013 0.010 0.712 0.093 0.154 3 K 0.016 0.004 0.021 0.743 0.110 0.106 4 E 0.019 0.004 0.039 0.723 0.113 0.102 5 K 0.018 0.005 0.024 0.755 0.101 0.098 6 L 0.031 0.019 0.018 0.723 0.093 0.117 7 E 0.048 0.009 0.013 0.653 0.112 0.165 8 S 0.036 0.003 0.008 0.642 0.113 0.198 9 K 0.038 0.005 0.012 0.760 0.077 0.108 10 K 0.016 0.005 0.010 0.776 0.090 0.103 11 D 0.007 0.002 0.008 0.749 0.098 0.135 12 E 0.005 0.001 0.007 0.881 0.052 0.054 13 I 0.003 0.002 0.007 0.934 0.033 0.022 14 R 0.002 0.001 0.012 0.930 0.033 0.021 15 C 0.005 0.001 0.047 0.839 0.070 0.039 16 C 0.005 0.002 0.081 0.793 0.084 0.035 17 Y 0.005 0.001 0.051 0.661 0.137 0.145 18 K 0.003 0.002 0.005 0.014 0.140 0.837 19 I 0.004 0.007 0.001 0.004 0.100 0.883 20 T 0.002 0.004 0.001 0.010 0.118 0.864 21 D 0.001 0.001 0.021 0.898 0.057 0.022 22 T 0.001 0.001 0.021 0.938 0.033 0.006 23 D 0.001 0.001 0.009 0.981 0.007 0.002 24 V 0.001 0.001 0.001 0.997 0.001 0.001 25 A 0.001 0.001 0.001 0.999 0.001 0.001 26 V 0.001 0.001 0.001 0.999 0.001 0.001 27 L 0.001 0.001 0.001 0.999 0.001 0.001 28 L 0.001 0.001 0.001 0.999 0.001 0.001 29 K 0.001 0.001 0.001 0.999 0.001 0.001 30 M 0.001 0.001 0.001 0.997 0.001 0.001 31 V 0.001 0.001 0.004 0.990 0.004 0.002 32 E 0.001 0.001 0.007 0.933 0.033 0.027 33 I 0.001 0.001 0.018 0.724 0.117 0.140 34 E 0.003 0.007 0.036 0.071 0.498 0.385 35 K 0.003 0.002 0.034 0.014 0.587 0.361 36 P 0.011 0.004 0.049 0.009 0.495 0.433 37 I 0.085 0.047 0.015 0.008 0.373 0.473 38 T 0.106 0.041 0.003 0.008 0.081 0.761 39 S 0.006 0.001 0.027 0.908 0.042 0.016 40 E 0.001 0.001 0.013 0.966 0.019 0.002 41 E 0.001 0.001 0.006 0.981 0.011 0.001 42 L 0.001 0.001 0.003 0.985 0.011 0.001 43 A 0.001 0.001 0.003 0.985 0.010 0.002 44 D 0.001 0.001 0.010 0.969 0.018 0.003 45 I 0.001 0.001 0.012 0.956 0.022 0.009 46 F 0.001 0.001 0.010 0.827 0.050 0.111 47 K 0.001 0.001 0.001 0.010 0.053 0.936 48 L 0.001 0.003 0.001 0.003 0.077 0.915 49 S 0.003 0.004 0.001 0.005 0.070 0.917 50 K 0.002 0.001 0.047 0.832 0.066 0.052 51 T 0.001 0.001 0.042 0.917 0.028 0.012 52 T 0.001 0.001 0.039 0.949 0.009 0.002 53 V 0.001 0.001 0.004 0.993 0.002 0.001 54 E 0.001 0.001 0.001 0.998 0.001 0.001 55 N 0.001 0.001 0.001 0.999 0.001 0.001 56 S 0.001 0.001 0.001 0.999 0.001 0.001 57 L 0.001 0.001 0.001 0.999 0.001 0.001 58 K 0.001 0.001 0.001 0.999 0.001 0.001 59 K 0.001 0.001 0.001 0.997 0.002 0.001 60 L 0.001 0.001 0.001 0.994 0.004 0.001 61 I 0.001 0.001 0.003 0.988 0.007 0.002 62 E 0.001 0.001 0.004 0.961 0.020 0.014 63 L 0.005 0.001 0.006 0.748 0.067 0.173 64 G 0.007 0.001 0.001 0.007 0.076 0.909 65 L 0.204 0.005 0.001 0.003 0.078 0.709 66 V 0.836 0.006 0.001 0.002 0.029 0.126 67 V 0.945 0.004 0.001 0.002 0.012 0.038 68 R 0.953 0.001 0.001 0.001 0.007 0.037 69 T 0.909 0.003 0.001 0.001 0.019 0.066 70 K 0.775 0.010 0.003 0.003 0.054 0.155 71 T 0.416 0.013 0.007 0.007 0.235 0.323 72 E 0.127 0.008 0.074 0.019 0.558 0.213 73 G 0.064 0.010 0.125 0.023 0.617 0.162 74 K 0.066 0.009 0.134 0.023 0.633 0.136 75 K 0.091 0.007 0.053 0.025 0.504 0.320 76 I 0.195 0.017 0.024 0.018 0.317 0.429 77 G 0.457 0.023 0.015 0.011 0.201 0.293 78 R 0.617 0.010 0.006 0.009 0.102 0.256 79 P 0.729 0.008 0.004 0.010 0.055 0.193 80 K 0.826 0.006 0.002 0.011 0.031 0.125 81 Y 0.837 0.006 0.001 0.015 0.031 0.110 82 Y 0.764 0.009 0.002 0.029 0.037 0.159 83 Y 0.540 0.008 0.006 0.060 0.091 0.294 84 S 0.247 0.010 0.031 0.198 0.188 0.326 85 I 0.076 0.006 0.053 0.291 0.256 0.318 86 S 0.040 0.006 0.040 0.412 0.226 0.276 87 S 0.026 0.003 0.040 0.638 0.159 0.135 88 N 0.013 0.004 0.035 0.772 0.096 0.081 89 I 0.008 0.003 0.038 0.871 0.044 0.036 90 L 0.006 0.001 0.051 0.857 0.041 0.043 91 E 0.004 0.001 0.045 0.880 0.033 0.036 92 K 0.002 0.001 0.038 0.912 0.019 0.028 93 I 0.002 0.001 0.011 0.942 0.013 0.031 94 R 0.001 0.001 0.006 0.967 0.011 0.016 95 N 0.001 0.001 0.004 0.970 0.010 0.015 96 D 0.001 0.001 0.007 0.980 0.007 0.005 97 L 0.001 0.001 0.004 0.983 0.007 0.005 98 L 0.001 0.001 0.003 0.982 0.009 0.006 99 N 0.001 0.001 0.003 0.975 0.011 0.011 100 C 0.001 0.001 0.003 0.977 0.007 0.013 101 A 0.001 0.001 0.003 0.979 0.008 0.010 102 K 0.001 0.001 0.004 0.966 0.016 0.013 103 R 0.001 0.001 0.008 0.956 0.022 0.014 104 M 0.001 0.001 0.012 0.953 0.025 0.009 105 E 0.001 0.001 0.039 0.889 0.056 0.015 106 L 0.001 0.001 0.065 0.801 0.095 0.038 107 A 0.001 0.001 0.052 0.582 0.155 0.209 108 A 0.002 0.006 0.007 0.124 0.103 0.758 109 T 0.001 0.001 0.001 0.001 0.012 0.986