# TARGET T0265 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0265.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 269 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.002 0.131 0.001 0.012 0.801 0.001 0.001 0.002 0.025 0.017 0.006 0.003 2 M 0.001 0.003 0.051 0.001 0.010 0.900 0.001 0.001 0.002 0.005 0.017 0.001 0.008 3 K 0.002 0.002 0.020 0.001 0.006 0.947 0.001 0.001 0.001 0.008 0.008 0.002 0.002 4 E 0.002 0.001 0.012 0.001 0.008 0.958 0.001 0.001 0.001 0.005 0.009 0.002 0.002 5 K 0.005 0.001 0.010 0.001 0.012 0.947 0.001 0.001 0.001 0.003 0.016 0.001 0.003 6 L 0.004 0.001 0.009 0.001 0.011 0.939 0.001 0.001 0.001 0.005 0.026 0.002 0.002 7 E 0.003 0.001 0.015 0.001 0.010 0.921 0.001 0.001 0.001 0.008 0.037 0.002 0.002 8 S 0.002 0.001 0.022 0.001 0.006 0.905 0.001 0.001 0.001 0.012 0.045 0.002 0.002 9 K 0.002 0.002 0.036 0.001 0.008 0.881 0.001 0.001 0.001 0.013 0.052 0.001 0.004 10 K 0.002 0.002 0.038 0.001 0.010 0.858 0.001 0.001 0.001 0.020 0.062 0.003 0.003 11 D 0.001 0.001 0.025 0.001 0.009 0.890 0.001 0.001 0.001 0.017 0.051 0.001 0.003 12 E 0.001 0.002 0.041 0.001 0.014 0.886 0.001 0.001 0.001 0.014 0.035 0.002 0.003 13 I 0.002 0.005 0.032 0.001 0.012 0.879 0.001 0.001 0.003 0.018 0.037 0.003 0.006 14 R 0.004 0.003 0.031 0.001 0.022 0.848 0.001 0.003 0.002 0.014 0.065 0.002 0.005 15 C 0.004 0.004 0.056 0.001 0.036 0.747 0.001 0.001 0.006 0.037 0.094 0.006 0.007 16 C 0.004 0.013 0.092 0.002 0.073 0.558 0.001 0.001 0.003 0.046 0.187 0.005 0.015 17 Y 0.001 0.010 0.064 0.004 0.062 0.219 0.001 0.001 0.003 0.256 0.371 0.004 0.007 18 K 0.001 0.008 0.159 0.001 0.019 0.060 0.001 0.001 0.004 0.111 0.627 0.004 0.006 19 I 0.001 0.021 0.738 0.001 0.002 0.022 0.001 0.001 0.003 0.181 0.028 0.001 0.005 20 T 0.001 0.005 0.880 0.001 0.001 0.022 0.001 0.001 0.001 0.085 0.006 0.001 0.001 21 D 0.001 0.001 0.006 0.001 0.020 0.923 0.001 0.001 0.001 0.008 0.043 0.001 0.001 22 T 0.001 0.001 0.002 0.001 0.011 0.962 0.001 0.001 0.001 0.004 0.021 0.001 0.001 23 D 0.001 0.001 0.001 0.001 0.008 0.988 0.001 0.001 0.001 0.001 0.002 0.001 0.001 24 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 26 V 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 29 K 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 30 M 0.001 0.001 0.001 0.001 0.001 0.985 0.001 0.001 0.001 0.001 0.010 0.001 0.001 31 V 0.001 0.001 0.004 0.001 0.003 0.947 0.001 0.001 0.001 0.002 0.042 0.001 0.001 32 E 0.001 0.001 0.007 0.001 0.004 0.871 0.001 0.001 0.001 0.006 0.111 0.001 0.001 33 I 0.001 0.001 0.039 0.001 0.011 0.614 0.001 0.001 0.001 0.037 0.299 0.001 0.001 34 E 0.001 0.004 0.220 0.001 0.046 0.112 0.001 0.001 0.001 0.178 0.439 0.001 0.001 35 K 0.001 0.002 0.271 0.002 0.042 0.014 0.001 0.001 0.001 0.434 0.231 0.001 0.001 36 P 0.001 0.013 0.612 0.002 0.021 0.006 0.001 0.001 0.019 0.237 0.076 0.003 0.011 37 I 0.001 0.141 0.525 0.001 0.002 0.003 0.001 0.001 0.068 0.175 0.005 0.055 0.024 38 T 0.001 0.038 0.854 0.001 0.001 0.005 0.001 0.001 0.032 0.015 0.001 0.001 0.054 39 S 0.001 0.001 0.016 0.001 0.005 0.949 0.001 0.001 0.001 0.004 0.025 0.001 0.001 40 E 0.001 0.001 0.001 0.001 0.002 0.985 0.001 0.001 0.001 0.002 0.010 0.001 0.001 41 E 0.001 0.001 0.001 0.001 0.003 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 42 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.001 0.001 0.001 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 44 D 0.001 0.001 0.001 0.001 0.004 0.952 0.001 0.001 0.001 0.002 0.039 0.001 0.001 45 I 0.001 0.001 0.007 0.001 0.012 0.880 0.001 0.001 0.001 0.007 0.091 0.001 0.001 46 F 0.001 0.003 0.024 0.001 0.023 0.425 0.001 0.001 0.001 0.092 0.429 0.001 0.003 47 K 0.001 0.003 0.153 0.001 0.014 0.085 0.001 0.001 0.001 0.067 0.673 0.002 0.001 48 L 0.001 0.027 0.615 0.001 0.004 0.039 0.001 0.001 0.003 0.266 0.038 0.001 0.007 49 S 0.001 0.006 0.889 0.001 0.001 0.011 0.001 0.001 0.001 0.087 0.003 0.001 0.003 50 K 0.001 0.001 0.018 0.001 0.025 0.889 0.001 0.001 0.001 0.020 0.046 0.001 0.001 51 T 0.001 0.001 0.002 0.001 0.015 0.953 0.001 0.001 0.001 0.004 0.026 0.001 0.001 52 T 0.001 0.001 0.002 0.001 0.007 0.981 0.001 0.001 0.001 0.002 0.007 0.001 0.001 53 V 0.001 0.001 0.003 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.002 0.001 0.001 54 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 N 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 56 S 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 57 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 59 K 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 60 L 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.002 0.006 0.001 0.001 61 I 0.001 0.001 0.004 0.001 0.009 0.958 0.001 0.001 0.001 0.001 0.027 0.001 0.001 62 E 0.001 0.001 0.004 0.001 0.023 0.845 0.001 0.001 0.001 0.005 0.119 0.001 0.001 63 L 0.001 0.001 0.003 0.001 0.009 0.114 0.001 0.001 0.001 0.008 0.865 0.001 0.001 64 G 0.001 0.001 0.023 0.001 0.003 0.009 0.001 0.001 0.002 0.017 0.945 0.001 0.001 65 L 0.001 0.007 0.793 0.001 0.003 0.008 0.004 0.001 0.031 0.066 0.014 0.014 0.058 66 V 0.013 0.032 0.171 0.052 0.004 0.009 0.019 0.003 0.218 0.035 0.006 0.155 0.284 67 V 0.050 0.005 0.072 0.037 0.003 0.005 0.032 0.005 0.053 0.019 0.004 0.492 0.221 68 R 0.115 0.006 0.058 0.029 0.003 0.004 0.075 0.008 0.035 0.005 0.002 0.061 0.599 69 T 0.104 0.001 0.038 0.008 0.001 0.002 0.025 0.007 0.027 0.006 0.001 0.662 0.119 70 K 0.073 0.010 0.084 0.018 0.003 0.005 0.016 0.006 0.026 0.014 0.006 0.027 0.712 71 T 0.030 0.014 0.454 0.070 0.013 0.013 0.005 0.001 0.022 0.082 0.025 0.150 0.120 72 E 0.005 0.005 0.152 0.013 0.054 0.036 0.001 0.001 0.002 0.293 0.361 0.027 0.053 73 G 0.001 0.006 0.131 0.006 0.065 0.028 0.001 0.001 0.001 0.229 0.510 0.009 0.013 74 K 0.002 0.010 0.244 0.008 0.069 0.021 0.001 0.001 0.001 0.332 0.259 0.022 0.031 75 K 0.013 0.009 0.312 0.018 0.049 0.022 0.001 0.001 0.001 0.263 0.241 0.022 0.050 76 I 0.073 0.032 0.217 0.025 0.034 0.017 0.006 0.001 0.007 0.168 0.168 0.097 0.152 77 G 0.194 0.011 0.235 0.023 0.006 0.011 0.013 0.003 0.010 0.075 0.024 0.077 0.318 78 R 0.258 0.009 0.132 0.011 0.001 0.005 0.021 0.004 0.023 0.038 0.004 0.414 0.079 79 P 0.215 0.009 0.075 0.006 0.001 0.006 0.032 0.008 0.062 0.010 0.002 0.030 0.543 80 K 0.259 0.004 0.093 0.222 0.002 0.012 0.040 0.022 0.062 0.016 0.003 0.198 0.068 81 Y 0.281 0.005 0.091 0.011 0.002 0.009 0.049 0.016 0.086 0.014 0.003 0.208 0.225 82 Y 0.199 0.009 0.147 0.014 0.009 0.018 0.050 0.013 0.052 0.018 0.006 0.041 0.425 83 Y 0.104 0.009 0.304 0.012 0.008 0.034 0.025 0.007 0.065 0.046 0.009 0.300 0.077 84 S 0.042 0.011 0.250 0.008 0.022 0.114 0.012 0.002 0.049 0.084 0.050 0.036 0.321 85 I 0.015 0.009 0.307 0.007 0.039 0.249 0.003 0.001 0.013 0.132 0.139 0.047 0.039 86 S 0.002 0.007 0.227 0.002 0.045 0.336 0.001 0.001 0.006 0.166 0.179 0.008 0.021 87 S 0.001 0.003 0.115 0.001 0.054 0.636 0.001 0.001 0.002 0.078 0.104 0.003 0.004 88 N 0.001 0.004 0.119 0.001 0.062 0.671 0.001 0.001 0.002 0.054 0.078 0.004 0.005 89 I 0.001 0.004 0.081 0.001 0.044 0.770 0.001 0.001 0.002 0.032 0.061 0.001 0.004 90 L 0.001 0.001 0.038 0.001 0.036 0.864 0.001 0.001 0.001 0.015 0.044 0.001 0.001 91 E 0.001 0.001 0.019 0.001 0.028 0.884 0.001 0.001 0.001 0.014 0.052 0.001 0.001 92 K 0.001 0.001 0.018 0.001 0.014 0.910 0.001 0.001 0.001 0.010 0.046 0.001 0.001 93 I 0.001 0.001 0.035 0.001 0.005 0.922 0.001 0.001 0.001 0.016 0.019 0.001 0.001 94 R 0.001 0.001 0.006 0.001 0.003 0.978 0.001 0.001 0.001 0.005 0.008 0.001 0.001 95 N 0.001 0.001 0.002 0.001 0.004 0.985 0.001 0.001 0.001 0.002 0.006 0.001 0.001 96 D 0.001 0.001 0.002 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.005 0.001 0.001 97 L 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 98 L 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 99 N 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 100 C 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 101 A 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 102 K 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 103 R 0.001 0.001 0.001 0.001 0.002 0.984 0.001 0.001 0.001 0.001 0.012 0.001 0.001 104 M 0.001 0.001 0.004 0.001 0.003 0.970 0.001 0.001 0.001 0.004 0.019 0.001 0.001 105 E 0.001 0.001 0.010 0.001 0.018 0.917 0.001 0.001 0.001 0.003 0.051 0.001 0.001 106 L 0.001 0.001 0.015 0.001 0.031 0.762 0.001 0.001 0.001 0.016 0.175 0.001 0.001 107 A 0.001 0.003 0.052 0.001 0.023 0.486 0.001 0.001 0.001 0.049 0.384 0.001 0.001 108 A 0.001 0.016 0.448 0.001 0.008 0.209 0.001 0.001 0.001 0.111 0.200 0.001 0.005 109 T 0.001 0.001 0.939 0.001 0.002 0.017 0.001 0.001 0.001 0.021 0.018 0.001 0.001