# TARGET T0265 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0265.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 269 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.949 0.004 0.006 0.028 0.002 0.002 0.004 0.002 0.001 0.001 0.001 2 M 0.973 0.005 0.007 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 3 K 0.976 0.005 0.005 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 4 E 0.967 0.005 0.008 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 K 0.955 0.006 0.009 0.024 0.001 0.001 0.002 0.001 0.001 0.001 0.001 6 L 0.903 0.012 0.015 0.057 0.002 0.005 0.003 0.001 0.002 0.001 0.001 7 E 0.884 0.021 0.025 0.054 0.005 0.005 0.003 0.001 0.002 0.001 0.001 8 S 0.698 0.056 0.059 0.142 0.019 0.009 0.005 0.002 0.009 0.002 0.001 9 K 0.759 0.035 0.055 0.104 0.004 0.017 0.009 0.002 0.014 0.002 0.001 10 K 0.771 0.031 0.073 0.067 0.010 0.009 0.026 0.006 0.004 0.004 0.001 11 D 0.635 0.015 0.055 0.112 0.015 0.038 0.095 0.021 0.011 0.003 0.001 12 E 0.935 0.014 0.012 0.031 0.001 0.003 0.001 0.001 0.001 0.001 0.001 13 I 0.881 0.040 0.029 0.036 0.002 0.007 0.002 0.001 0.002 0.001 0.001 14 R 0.891 0.027 0.024 0.040 0.004 0.004 0.004 0.001 0.005 0.001 0.001 15 C 0.768 0.066 0.055 0.046 0.035 0.007 0.011 0.003 0.005 0.003 0.001 16 C 0.743 0.037 0.069 0.115 0.005 0.017 0.007 0.001 0.006 0.001 0.001 17 Y 0.246 0.060 0.070 0.562 0.014 0.010 0.019 0.006 0.012 0.001 0.001 18 K 0.005 0.002 0.004 0.038 0.003 0.011 0.912 0.017 0.008 0.001 0.001 19 I 0.007 0.342 0.557 0.024 0.026 0.034 0.002 0.001 0.008 0.001 0.001 20 T 0.004 0.133 0.768 0.001 0.056 0.024 0.001 0.001 0.008 0.006 0.001 21 D 0.987 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 T 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 D 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 M 0.983 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 V 0.963 0.002 0.004 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 E 0.874 0.007 0.013 0.086 0.004 0.002 0.009 0.003 0.001 0.001 0.001 33 I 0.584 0.034 0.073 0.280 0.010 0.008 0.005 0.001 0.004 0.001 0.001 34 E 0.257 0.018 0.040 0.440 0.008 0.050 0.146 0.010 0.029 0.002 0.001 35 K 0.095 0.230 0.442 0.020 0.080 0.014 0.037 0.003 0.070 0.009 0.001 36 P 0.168 0.027 0.593 0.064 0.002 0.068 0.005 0.002 0.004 0.001 0.066 37 I 0.015 0.463 0.402 0.021 0.040 0.042 0.003 0.001 0.013 0.001 0.001 38 T 0.003 0.170 0.681 0.001 0.060 0.059 0.001 0.001 0.022 0.003 0.001 39 S 0.992 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 E 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 D 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 I 0.978 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 F 0.184 0.001 0.002 0.811 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 K 0.007 0.001 0.001 0.007 0.001 0.007 0.966 0.010 0.002 0.001 0.001 48 L 0.087 0.423 0.331 0.076 0.024 0.040 0.004 0.001 0.014 0.001 0.001 49 S 0.069 0.081 0.659 0.015 0.062 0.082 0.003 0.002 0.015 0.013 0.001 50 K 0.987 0.001 0.003 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 T 0.992 0.001 0.002 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 T 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 V 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 N 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 S 0.990 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 E 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 L 0.325 0.001 0.002 0.672 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 G 0.008 0.001 0.002 0.005 0.003 0.001 0.215 0.748 0.001 0.017 0.001 65 L 0.075 0.189 0.601 0.051 0.029 0.048 0.003 0.001 0.002 0.001 0.001 66 V 0.014 0.638 0.266 0.006 0.024 0.037 0.001 0.001 0.014 0.001 0.001 67 V 0.013 0.771 0.100 0.013 0.035 0.028 0.001 0.001 0.039 0.001 0.001 68 R 0.011 0.554 0.356 0.003 0.023 0.035 0.001 0.001 0.016 0.001 0.001 69 T 0.012 0.746 0.126 0.006 0.041 0.031 0.001 0.001 0.037 0.001 0.001 70 K 0.067 0.328 0.521 0.017 0.018 0.035 0.001 0.001 0.011 0.001 0.001 71 T 0.042 0.547 0.175 0.037 0.115 0.022 0.005 0.002 0.049 0.005 0.001 72 E 0.185 0.154 0.313 0.154 0.037 0.031 0.063 0.008 0.038 0.016 0.002 73 G 0.088 0.021 0.078 0.064 0.053 0.008 0.165 0.319 0.005 0.198 0.001 74 K 0.162 0.069 0.220 0.320 0.019 0.043 0.133 0.010 0.020 0.003 0.001 75 K 0.188 0.193 0.232 0.162 0.035 0.044 0.077 0.038 0.025 0.005 0.001 76 I 0.100 0.277 0.285 0.220 0.030 0.021 0.045 0.004 0.013 0.004 0.001 77 G 0.038 0.057 0.149 0.055 0.198 0.006 0.075 0.217 0.004 0.200 0.001 78 R 0.004 0.631 0.240 0.001 0.021 0.008 0.002 0.001 0.092 0.001 0.001 79 P 0.013 0.004 0.944 0.001 0.001 0.027 0.001 0.001 0.001 0.001 0.011 80 K 0.239 0.371 0.207 0.104 0.035 0.026 0.002 0.001 0.013 0.001 0.001 81 Y 0.019 0.625 0.185 0.008 0.120 0.016 0.004 0.001 0.021 0.001 0.001 82 Y 0.043 0.490 0.343 0.029 0.021 0.050 0.001 0.001 0.021 0.001 0.001 83 Y 0.055 0.608 0.118 0.025 0.141 0.022 0.002 0.001 0.027 0.001 0.001 84 S 0.092 0.367 0.391 0.020 0.048 0.055 0.003 0.002 0.018 0.002 0.001 85 I 0.213 0.295 0.299 0.098 0.021 0.043 0.005 0.001 0.023 0.001 0.001 86 S 0.211 0.185 0.338 0.024 0.123 0.032 0.013 0.006 0.028 0.040 0.001 87 S 0.967 0.004 0.013 0.009 0.002 0.002 0.001 0.001 0.001 0.001 0.001 88 N 0.943 0.002 0.008 0.032 0.001 0.003 0.004 0.005 0.001 0.001 0.001 89 I 0.976 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 L 0.994 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 K 0.979 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 I 0.916 0.001 0.002 0.077 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 R 0.987 0.001 0.003 0.004 0.001 0.001 0.003 0.001 0.001 0.001 0.001 95 N 0.972 0.001 0.002 0.020 0.001 0.001 0.001 0.002 0.001 0.001 0.001 96 D 0.912 0.001 0.001 0.081 0.001 0.002 0.001 0.001 0.002 0.001 0.001 97 L 0.963 0.001 0.001 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.001 98 L 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 N 0.974 0.001 0.001 0.024 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 C 0.977 0.001 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 A 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 K 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 R 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 M 0.984 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 E 0.976 0.001 0.002 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 L 0.966 0.002 0.007 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 A 0.462 0.002 0.007 0.510 0.001 0.003 0.009 0.003 0.003 0.001 0.001 108 A 0.220 0.072 0.352 0.202 0.006 0.074 0.016 0.002 0.056 0.001 0.001 109 T 0.197 0.125 0.283 0.221 0.038 0.076 0.029 0.005 0.015 0.010 0.001