# TARGET T0265 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0265.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 46.7518 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.026 0.007 0.008 0.128 0.105 0.725 2 M 0.060 0.013 0.017 0.520 0.065 0.325 3 K 0.087 0.013 0.050 0.482 0.108 0.260 4 E 0.070 0.009 0.131 0.454 0.175 0.160 5 K 0.078 0.013 0.139 0.428 0.167 0.174 6 L 0.031 0.007 0.103 0.494 0.185 0.180 7 E 0.010 0.004 0.076 0.556 0.176 0.177 8 S 0.007 0.003 0.065 0.514 0.183 0.228 9 K 0.009 0.005 0.045 0.641 0.139 0.160 10 K 0.021 0.007 0.026 0.581 0.152 0.214 11 D 0.043 0.005 0.031 0.608 0.138 0.175 12 E 0.052 0.003 0.065 0.726 0.097 0.057 13 I 0.152 0.008 0.069 0.629 0.087 0.054 14 R 0.154 0.005 0.082 0.617 0.087 0.055 15 C 0.180 0.005 0.065 0.538 0.081 0.132 16 C 0.184 0.014 0.060 0.462 0.158 0.122 17 Y 0.204 0.021 0.041 0.289 0.206 0.239 18 K 0.047 0.008 0.011 0.055 0.242 0.637 19 I 0.039 0.024 0.006 0.027 0.222 0.682 20 T 0.018 0.007 0.002 0.023 0.094 0.856 21 D 0.001 0.001 0.029 0.944 0.013 0.012 22 T 0.001 0.001 0.011 0.980 0.005 0.003 23 D 0.001 0.001 0.003 0.996 0.001 0.001 24 V 0.001 0.001 0.001 0.998 0.001 0.001 25 A 0.001 0.001 0.001 0.999 0.001 0.001 26 V 0.001 0.001 0.001 0.998 0.001 0.001 27 L 0.001 0.001 0.001 0.997 0.001 0.001 28 L 0.001 0.001 0.002 0.996 0.001 0.001 29 K 0.001 0.001 0.004 0.992 0.002 0.001 30 M 0.001 0.001 0.005 0.982 0.004 0.007 31 V 0.002 0.001 0.011 0.956 0.010 0.020 32 E 0.003 0.001 0.021 0.910 0.034 0.032 33 I 0.003 0.002 0.011 0.873 0.056 0.056 34 E 0.003 0.002 0.011 0.428 0.148 0.408 35 K 0.004 0.003 0.002 0.013 0.151 0.827 36 P 0.021 0.013 0.007 0.015 0.191 0.754 37 I 0.052 0.046 0.002 0.005 0.134 0.761 38 T 0.025 0.011 0.001 0.007 0.051 0.906 39 S 0.001 0.001 0.014 0.973 0.004 0.008 40 E 0.001 0.001 0.011 0.985 0.002 0.001 41 E 0.001 0.001 0.014 0.979 0.004 0.001 42 L 0.001 0.001 0.007 0.987 0.003 0.002 43 A 0.001 0.001 0.012 0.973 0.010 0.004 44 D 0.002 0.001 0.014 0.923 0.034 0.026 45 I 0.005 0.003 0.014 0.837 0.079 0.062 46 F 0.007 0.009 0.011 0.610 0.166 0.196 47 K 0.004 0.003 0.008 0.051 0.207 0.727 48 L 0.008 0.007 0.008 0.068 0.205 0.705 49 S 0.009 0.005 0.004 0.064 0.060 0.860 50 K 0.006 0.002 0.025 0.850 0.037 0.079 51 T 0.011 0.001 0.015 0.907 0.030 0.036 52 T 0.007 0.001 0.006 0.961 0.008 0.017 53 V 0.001 0.001 0.001 0.996 0.001 0.001 54 E 0.001 0.001 0.001 0.995 0.002 0.002 55 N 0.001 0.001 0.001 0.997 0.001 0.001 56 S 0.001 0.001 0.001 0.996 0.001 0.002 57 L 0.001 0.001 0.001 0.999 0.001 0.001 58 K 0.001 0.001 0.001 0.998 0.001 0.001 59 K 0.001 0.001 0.001 0.996 0.001 0.001 60 L 0.001 0.001 0.004 0.989 0.005 0.002 61 I 0.001 0.001 0.011 0.981 0.005 0.002 62 E 0.001 0.001 0.017 0.970 0.007 0.004 63 L 0.002 0.001 0.025 0.872 0.028 0.073 64 G 0.004 0.001 0.003 0.005 0.044 0.943 65 L 0.196 0.007 0.003 0.002 0.070 0.723 66 V 0.820 0.003 0.001 0.001 0.034 0.140 67 V 0.919 0.002 0.001 0.001 0.018 0.059 68 R 0.935 0.001 0.001 0.001 0.013 0.049 69 T 0.903 0.003 0.001 0.002 0.017 0.075 70 K 0.842 0.006 0.001 0.005 0.052 0.094 71 T 0.595 0.013 0.006 0.011 0.177 0.198 72 E 0.305 0.013 0.017 0.021 0.408 0.235 73 G 0.248 0.031 0.044 0.048 0.437 0.192 74 K 0.214 0.034 0.090 0.064 0.351 0.248 75 K 0.173 0.026 0.111 0.061 0.444 0.185 76 I 0.096 0.014 0.044 0.063 0.454 0.329 77 G 0.076 0.012 0.013 0.009 0.329 0.562 78 R 0.123 0.012 0.002 0.001 0.164 0.698 79 P 0.328 0.013 0.005 0.002 0.117 0.535 80 K 0.529 0.010 0.008 0.002 0.111 0.340 81 Y 0.860 0.006 0.005 0.001 0.038 0.090 82 Y 0.952 0.002 0.002 0.001 0.012 0.031 83 Y 0.960 0.004 0.001 0.002 0.008 0.025 84 S 0.770 0.011 0.003 0.010 0.042 0.164 85 I 0.177 0.011 0.004 0.010 0.105 0.693 86 S 0.023 0.005 0.003 0.012 0.165 0.793 87 S 0.003 0.002 0.025 0.663 0.153 0.154 88 N 0.001 0.001 0.019 0.934 0.032 0.015 89 I 0.001 0.001 0.007 0.982 0.008 0.002 90 L 0.001 0.001 0.003 0.987 0.005 0.004 91 E 0.001 0.001 0.004 0.989 0.005 0.002 92 K 0.001 0.001 0.005 0.986 0.005 0.003 93 I 0.001 0.001 0.002 0.990 0.003 0.004 94 R 0.001 0.001 0.002 0.992 0.003 0.003 95 N 0.001 0.001 0.003 0.989 0.004 0.004 96 D 0.001 0.001 0.003 0.961 0.008 0.027 97 L 0.001 0.001 0.002 0.989 0.003 0.005 98 L 0.001 0.001 0.005 0.978 0.009 0.007 99 N 0.001 0.001 0.007 0.959 0.018 0.015 100 C 0.002 0.001 0.015 0.917 0.030 0.035 101 A 0.004 0.001 0.024 0.906 0.038 0.027 102 K 0.006 0.001 0.033 0.881 0.051 0.030 103 R 0.009 0.001 0.023 0.867 0.041 0.059 104 M 0.032 0.005 0.018 0.745 0.064 0.136 105 E 0.078 0.008 0.024 0.536 0.101 0.253 106 L 0.073 0.006 0.025 0.440 0.122 0.335 107 A 0.050 0.008 0.016 0.213 0.149 0.565 108 A 0.036 0.009 0.008 0.052 0.125 0.771 109 T 0.032 0.008 0.004 0.024 0.097 0.834