# TARGET T0265 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0265.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 46.7518 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.007 0.029 0.498 0.002 0.019 0.273 0.002 0.001 0.005 0.041 0.030 0.012 0.082 2 M 0.011 0.025 0.452 0.003 0.029 0.333 0.003 0.001 0.006 0.021 0.025 0.039 0.052 3 K 0.023 0.006 0.161 0.010 0.088 0.541 0.003 0.001 0.003 0.039 0.044 0.020 0.061 4 E 0.010 0.005 0.142 0.003 0.089 0.505 0.002 0.001 0.003 0.070 0.078 0.068 0.025 5 K 0.004 0.007 0.164 0.001 0.076 0.514 0.001 0.001 0.003 0.028 0.151 0.010 0.040 6 L 0.002 0.019 0.485 0.003 0.028 0.268 0.001 0.001 0.002 0.098 0.062 0.012 0.020 7 E 0.001 0.004 0.425 0.001 0.038 0.284 0.001 0.001 0.001 0.087 0.151 0.005 0.004 8 S 0.001 0.003 0.150 0.001 0.054 0.348 0.001 0.001 0.001 0.095 0.344 0.001 0.004 9 K 0.001 0.005 0.199 0.001 0.051 0.438 0.001 0.001 0.001 0.085 0.215 0.002 0.003 10 K 0.001 0.005 0.197 0.001 0.035 0.555 0.001 0.001 0.001 0.133 0.068 0.002 0.002 11 D 0.001 0.004 0.176 0.001 0.019 0.660 0.001 0.001 0.003 0.082 0.041 0.004 0.008 12 E 0.002 0.006 0.020 0.001 0.011 0.912 0.001 0.002 0.006 0.008 0.016 0.003 0.013 13 I 0.002 0.002 0.008 0.001 0.008 0.961 0.001 0.001 0.002 0.003 0.007 0.001 0.002 14 R 0.002 0.001 0.008 0.001 0.021 0.933 0.001 0.001 0.003 0.005 0.017 0.004 0.003 15 C 0.004 0.001 0.010 0.001 0.029 0.903 0.001 0.002 0.002 0.005 0.036 0.002 0.005 16 C 0.006 0.003 0.020 0.001 0.057 0.784 0.001 0.003 0.002 0.010 0.105 0.003 0.006 17 Y 0.004 0.005 0.022 0.001 0.055 0.493 0.001 0.002 0.002 0.032 0.375 0.004 0.005 18 K 0.001 0.005 0.085 0.003 0.042 0.119 0.001 0.001 0.001 0.094 0.643 0.002 0.004 19 I 0.001 0.016 0.631 0.001 0.005 0.015 0.001 0.001 0.001 0.303 0.023 0.003 0.003 20 T 0.001 0.009 0.718 0.001 0.016 0.040 0.001 0.001 0.001 0.145 0.066 0.001 0.005 21 D 0.001 0.001 0.020 0.001 0.052 0.839 0.001 0.001 0.001 0.024 0.063 0.001 0.001 22 T 0.001 0.001 0.009 0.001 0.031 0.936 0.001 0.001 0.001 0.007 0.015 0.001 0.001 23 D 0.001 0.001 0.003 0.001 0.005 0.986 0.001 0.001 0.001 0.002 0.003 0.001 0.001 24 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 K 0.001 0.001 0.001 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 30 M 0.001 0.001 0.001 0.001 0.005 0.983 0.001 0.001 0.001 0.001 0.010 0.001 0.001 31 V 0.001 0.001 0.005 0.001 0.005 0.946 0.001 0.001 0.001 0.004 0.037 0.001 0.001 32 E 0.001 0.002 0.017 0.001 0.015 0.788 0.001 0.001 0.001 0.011 0.164 0.001 0.001 33 I 0.001 0.002 0.045 0.001 0.014 0.396 0.001 0.001 0.002 0.075 0.464 0.001 0.001 34 E 0.001 0.006 0.298 0.001 0.014 0.062 0.001 0.001 0.003 0.271 0.344 0.001 0.002 35 K 0.001 0.006 0.417 0.001 0.004 0.010 0.001 0.001 0.014 0.483 0.060 0.004 0.002 36 P 0.001 0.037 0.626 0.002 0.004 0.006 0.001 0.001 0.031 0.160 0.113 0.001 0.018 37 I 0.001 0.115 0.673 0.001 0.001 0.002 0.001 0.001 0.034 0.138 0.004 0.030 0.002 38 T 0.001 0.039 0.888 0.001 0.001 0.003 0.001 0.001 0.009 0.031 0.001 0.001 0.028 39 S 0.001 0.001 0.003 0.001 0.009 0.980 0.001 0.001 0.001 0.001 0.006 0.001 0.001 40 E 0.001 0.001 0.001 0.001 0.004 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 41 E 0.001 0.001 0.001 0.001 0.007 0.992 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 L 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.001 0.001 0.001 0.001 0.012 0.983 0.001 0.001 0.001 0.001 0.004 0.001 0.001 44 D 0.001 0.001 0.001 0.001 0.009 0.973 0.001 0.001 0.001 0.001 0.017 0.001 0.001 45 I 0.001 0.001 0.002 0.001 0.019 0.911 0.001 0.001 0.001 0.001 0.067 0.001 0.001 46 F 0.001 0.002 0.053 0.001 0.029 0.501 0.001 0.001 0.001 0.083 0.332 0.001 0.001 47 K 0.001 0.002 0.162 0.001 0.035 0.073 0.001 0.001 0.001 0.044 0.681 0.001 0.001 48 L 0.001 0.013 0.608 0.001 0.021 0.084 0.001 0.001 0.005 0.185 0.076 0.001 0.006 49 S 0.001 0.009 0.659 0.001 0.019 0.087 0.001 0.001 0.005 0.171 0.042 0.002 0.005 50 K 0.001 0.002 0.035 0.001 0.052 0.828 0.001 0.001 0.004 0.027 0.049 0.001 0.002 51 T 0.001 0.004 0.029 0.001 0.030 0.859 0.001 0.001 0.009 0.030 0.033 0.002 0.002 52 T 0.001 0.003 0.024 0.001 0.011 0.924 0.001 0.001 0.009 0.010 0.015 0.001 0.003 53 V 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.002 0.001 0.001 54 E 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 N 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 S 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 61 I 0.001 0.001 0.001 0.001 0.002 0.978 0.001 0.001 0.001 0.001 0.017 0.001 0.001 62 E 0.001 0.001 0.005 0.001 0.009 0.837 0.001 0.001 0.001 0.003 0.146 0.001 0.001 63 L 0.001 0.001 0.003 0.001 0.003 0.111 0.001 0.001 0.001 0.006 0.877 0.001 0.001 64 G 0.001 0.001 0.015 0.001 0.001 0.005 0.001 0.001 0.001 0.013 0.964 0.001 0.001 65 L 0.001 0.013 0.727 0.001 0.007 0.006 0.001 0.001 0.019 0.072 0.031 0.010 0.110 66 V 0.040 0.008 0.232 0.015 0.002 0.003 0.015 0.001 0.068 0.047 0.013 0.359 0.197 67 V 0.239 0.005 0.071 0.005 0.002 0.003 0.049 0.004 0.051 0.010 0.013 0.319 0.229 68 R 0.243 0.004 0.047 0.006 0.001 0.002 0.049 0.002 0.028 0.010 0.005 0.104 0.499 69 T 0.248 0.002 0.105 0.087 0.001 0.001 0.031 0.002 0.024 0.015 0.009 0.334 0.140 70 K 0.219 0.005 0.078 0.002 0.001 0.001 0.012 0.001 0.009 0.032 0.016 0.123 0.502 71 T 0.107 0.016 0.165 0.015 0.005 0.003 0.008 0.001 0.006 0.082 0.080 0.220 0.294 72 E 0.039 0.013 0.204 0.018 0.016 0.005 0.003 0.001 0.003 0.126 0.281 0.150 0.143 73 G 0.018 0.011 0.154 0.007 0.018 0.003 0.002 0.001 0.001 0.232 0.401 0.070 0.083 74 K 0.022 0.009 0.297 0.005 0.031 0.003 0.002 0.001 0.001 0.240 0.210 0.048 0.132 75 K 0.036 0.042 0.204 0.014 0.041 0.004 0.005 0.001 0.002 0.209 0.138 0.162 0.144 76 I 0.011 0.027 0.293 0.020 0.031 0.004 0.003 0.001 0.002 0.142 0.247 0.084 0.138 77 G 0.025 0.020 0.370 0.061 0.008 0.001 0.003 0.001 0.001 0.190 0.109 0.035 0.176 78 R 0.013 0.016 0.458 0.005 0.002 0.001 0.003 0.001 0.004 0.062 0.006 0.381 0.050 79 P 0.016 0.009 0.320 0.019 0.004 0.001 0.006 0.001 0.012 0.054 0.008 0.019 0.533 80 K 0.075 0.002 0.151 0.418 0.003 0.001 0.021 0.001 0.011 0.033 0.005 0.236 0.043 81 Y 0.326 0.003 0.040 0.003 0.002 0.001 0.094 0.004 0.028 0.012 0.001 0.132 0.354 82 Y 0.445 0.001 0.022 0.021 0.001 0.001 0.205 0.012 0.028 0.004 0.001 0.081 0.179 83 Y 0.532 0.001 0.022 0.012 0.001 0.001 0.153 0.006 0.028 0.003 0.001 0.123 0.118 84 S 0.205 0.003 0.124 0.002 0.001 0.001 0.048 0.005 0.082 0.013 0.002 0.306 0.209 85 I 0.036 0.012 0.552 0.003 0.001 0.001 0.008 0.001 0.034 0.028 0.006 0.049 0.269 86 S 0.002 0.006 0.855 0.001 0.004 0.011 0.001 0.001 0.009 0.044 0.010 0.011 0.046 87 S 0.001 0.001 0.017 0.001 0.084 0.810 0.001 0.001 0.001 0.020 0.066 0.001 0.001 88 N 0.001 0.001 0.006 0.001 0.074 0.889 0.001 0.001 0.001 0.005 0.023 0.001 0.001 89 I 0.001 0.001 0.003 0.001 0.055 0.926 0.001 0.001 0.001 0.002 0.013 0.001 0.001 90 L 0.001 0.001 0.004 0.001 0.004 0.987 0.001 0.001 0.001 0.003 0.002 0.001 0.001 91 E 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 92 K 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 93 I 0.001 0.001 0.004 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.005 0.001 0.001 94 R 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 95 N 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 96 D 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 97 L 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 98 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 99 N 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.007 0.001 0.001 100 C 0.001 0.001 0.001 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 101 A 0.001 0.001 0.003 0.001 0.004 0.982 0.001 0.001 0.001 0.002 0.009 0.001 0.001 102 K 0.001 0.001 0.004 0.001 0.009 0.959 0.001 0.001 0.001 0.003 0.024 0.001 0.001 103 R 0.001 0.001 0.007 0.001 0.012 0.934 0.001 0.001 0.001 0.004 0.042 0.001 0.001 104 M 0.001 0.002 0.039 0.001 0.015 0.859 0.001 0.001 0.001 0.021 0.061 0.001 0.001 105 E 0.001 0.006 0.193 0.002 0.028 0.501 0.001 0.001 0.002 0.053 0.203 0.004 0.007 106 L 0.001 0.013 0.360 0.002 0.029 0.364 0.001 0.001 0.004 0.108 0.088 0.012 0.017 107 A 0.001 0.009 0.515 0.003 0.024 0.140 0.001 0.001 0.002 0.120 0.171 0.008 0.008 108 A 0.001 0.007 0.645 0.001 0.023 0.048 0.001 0.001 0.002 0.079 0.176 0.003 0.015 109 T 0.001 0.012 0.818 0.001 0.010 0.025 0.001 0.001 0.003 0.085 0.026 0.011 0.008