# TARGET T0265 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0265.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 46.7518 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.003 0.002 0.005 0.290 0.004 0.009 0.688 2 M 0.015 0.010 0.016 0.613 0.005 0.017 0.323 3 K 0.016 0.005 0.053 0.776 0.020 0.025 0.105 4 E 0.013 0.002 0.114 0.707 0.029 0.061 0.074 5 K 0.008 0.005 0.076 0.693 0.022 0.120 0.076 6 L 0.009 0.008 0.048 0.458 0.071 0.060 0.346 7 E 0.003 0.002 0.090 0.577 0.032 0.123 0.172 8 S 0.001 0.002 0.085 0.623 0.028 0.221 0.041 9 K 0.002 0.001 0.073 0.628 0.034 0.197 0.065 10 K 0.007 0.005 0.037 0.666 0.078 0.053 0.154 11 D 0.015 0.003 0.030 0.729 0.045 0.060 0.117 12 E 0.025 0.006 0.022 0.857 0.019 0.042 0.029 13 I 0.035 0.010 0.015 0.888 0.009 0.016 0.027 14 R 0.058 0.003 0.027 0.854 0.017 0.018 0.023 15 C 0.057 0.001 0.029 0.852 0.006 0.044 0.011 16 C 0.073 0.008 0.057 0.730 0.013 0.088 0.031 17 Y 0.115 0.012 0.067 0.447 0.094 0.195 0.071 18 K 0.105 0.011 0.028 0.073 0.133 0.335 0.316 19 I 0.026 0.019 0.001 0.014 0.110 0.008 0.821 20 T 0.016 0.007 0.001 0.014 0.052 0.003 0.907 21 D 0.001 0.001 0.016 0.954 0.006 0.017 0.005 22 T 0.001 0.001 0.014 0.971 0.002 0.011 0.002 23 D 0.001 0.001 0.006 0.989 0.001 0.003 0.002 24 V 0.001 0.001 0.001 0.995 0.001 0.001 0.001 25 A 0.001 0.001 0.001 0.995 0.001 0.001 0.001 26 V 0.003 0.001 0.001 0.991 0.001 0.002 0.001 27 L 0.004 0.001 0.001 0.990 0.001 0.003 0.001 28 L 0.003 0.001 0.003 0.992 0.001 0.001 0.001 29 K 0.001 0.001 0.003 0.990 0.001 0.005 0.001 30 M 0.001 0.001 0.007 0.965 0.001 0.025 0.001 31 V 0.003 0.001 0.015 0.899 0.010 0.065 0.007 32 E 0.014 0.003 0.029 0.633 0.020 0.253 0.049 33 I 0.018 0.006 0.019 0.290 0.106 0.382 0.180 34 E 0.012 0.006 0.014 0.048 0.428 0.211 0.281 35 K 0.023 0.009 0.002 0.003 0.398 0.019 0.546 36 P 0.039 0.019 0.002 0.002 0.068 0.038 0.832 37 I 0.081 0.072 0.001 0.001 0.178 0.004 0.663 38 T 0.064 0.041 0.001 0.004 0.051 0.002 0.838 39 S 0.001 0.001 0.015 0.974 0.001 0.005 0.004 40 E 0.001 0.001 0.016 0.979 0.001 0.003 0.001 41 E 0.001 0.001 0.008 0.988 0.001 0.001 0.002 42 L 0.001 0.001 0.002 0.996 0.001 0.001 0.001 43 A 0.001 0.001 0.002 0.994 0.001 0.003 0.001 44 D 0.001 0.001 0.002 0.984 0.001 0.013 0.001 45 I 0.002 0.001 0.008 0.941 0.004 0.039 0.006 46 F 0.005 0.006 0.016 0.692 0.013 0.248 0.020 47 K 0.004 0.005 0.013 0.234 0.020 0.589 0.135 48 L 0.010 0.009 0.015 0.099 0.138 0.040 0.689 49 S 0.013 0.005 0.037 0.130 0.144 0.113 0.559 50 K 0.015 0.006 0.086 0.384 0.107 0.262 0.140 51 T 0.046 0.017 0.031 0.518 0.140 0.066 0.181 52 T 0.075 0.026 0.022 0.591 0.064 0.026 0.196 53 V 0.004 0.001 0.011 0.961 0.003 0.008 0.012 54 E 0.002 0.001 0.011 0.972 0.004 0.006 0.005 55 N 0.001 0.001 0.016 0.974 0.001 0.006 0.002 56 S 0.001 0.001 0.020 0.959 0.002 0.011 0.006 57 L 0.001 0.001 0.006 0.987 0.001 0.005 0.001 58 K 0.001 0.001 0.005 0.993 0.001 0.002 0.001 59 K 0.001 0.001 0.002 0.995 0.001 0.003 0.001 60 L 0.001 0.001 0.004 0.992 0.001 0.003 0.001 61 I 0.001 0.001 0.013 0.971 0.001 0.014 0.001 62 E 0.001 0.001 0.013 0.874 0.004 0.107 0.001 63 L 0.001 0.001 0.019 0.110 0.011 0.855 0.004 64 G 0.002 0.001 0.002 0.002 0.030 0.949 0.015 65 L 0.146 0.008 0.003 0.002 0.060 0.035 0.745 66 V 0.902 0.009 0.001 0.001 0.012 0.002 0.073 67 V 0.976 0.001 0.001 0.001 0.002 0.001 0.019 68 R 0.986 0.001 0.001 0.001 0.002 0.001 0.009 69 T 0.978 0.001 0.001 0.001 0.002 0.001 0.017 70 K 0.930 0.001 0.001 0.002 0.007 0.003 0.056 71 T 0.864 0.007 0.001 0.005 0.021 0.014 0.088 72 E 0.710 0.008 0.003 0.007 0.063 0.088 0.121 73 G 0.436 0.011 0.011 0.006 0.148 0.204 0.184 74 K 0.411 0.014 0.020 0.010 0.124 0.234 0.187 75 K 0.338 0.023 0.030 0.006 0.195 0.265 0.144 76 I 0.233 0.015 0.017 0.002 0.197 0.335 0.201 77 G 0.177 0.015 0.007 0.001 0.285 0.131 0.384 78 R 0.193 0.013 0.002 0.001 0.111 0.006 0.675 79 P 0.374 0.019 0.007 0.001 0.044 0.016 0.539 80 K 0.702 0.007 0.007 0.001 0.098 0.014 0.170 81 Y 0.938 0.002 0.002 0.001 0.007 0.003 0.048 82 Y 0.977 0.001 0.001 0.001 0.001 0.001 0.019 83 Y 0.986 0.001 0.001 0.001 0.001 0.001 0.011 84 S 0.944 0.003 0.001 0.001 0.002 0.001 0.048 85 I 0.628 0.009 0.001 0.003 0.027 0.007 0.326 86 S 0.078 0.004 0.002 0.005 0.080 0.014 0.817 87 S 0.007 0.001 0.061 0.558 0.098 0.200 0.075 88 N 0.002 0.001 0.032 0.819 0.018 0.102 0.024 89 I 0.001 0.001 0.014 0.938 0.003 0.022 0.021 90 L 0.001 0.001 0.002 0.987 0.001 0.005 0.004 91 E 0.001 0.001 0.001 0.996 0.001 0.001 0.001 92 K 0.001 0.001 0.002 0.996 0.001 0.002 0.001 93 I 0.001 0.001 0.001 0.994 0.001 0.004 0.001 94 R 0.001 0.001 0.001 0.994 0.001 0.005 0.001 95 N 0.001 0.001 0.001 0.987 0.001 0.011 0.001 96 D 0.001 0.001 0.001 0.982 0.002 0.011 0.004 97 L 0.001 0.001 0.001 0.993 0.001 0.006 0.001 98 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 99 N 0.001 0.001 0.002 0.993 0.001 0.003 0.001 100 C 0.001 0.001 0.002 0.990 0.001 0.005 0.002 101 A 0.001 0.001 0.003 0.989 0.001 0.005 0.001 102 K 0.001 0.001 0.005 0.979 0.001 0.012 0.002 103 R 0.002 0.001 0.006 0.954 0.003 0.029 0.006 104 M 0.008 0.005 0.005 0.907 0.009 0.048 0.018 105 E 0.008 0.003 0.008 0.757 0.011 0.165 0.048 106 L 0.017 0.003 0.011 0.514 0.075 0.137 0.243 107 A 0.012 0.003 0.009 0.155 0.081 0.133 0.607 108 A 0.013 0.012 0.010 0.052 0.071 0.070 0.771 109 T 0.016 0.005 0.015 0.024 0.052 0.038 0.850