# TARGET T0265 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0265.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 46.7518 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.569 0.092 0.130 0.090 0.045 0.013 0.024 0.014 0.013 0.010 0.001 2 M 0.753 0.059 0.073 0.066 0.013 0.014 0.011 0.002 0.004 0.003 0.001 3 K 0.753 0.062 0.078 0.071 0.007 0.013 0.006 0.001 0.006 0.001 0.001 4 E 0.602 0.131 0.132 0.057 0.033 0.011 0.014 0.002 0.014 0.001 0.001 5 K 0.671 0.047 0.170 0.060 0.004 0.028 0.008 0.001 0.010 0.001 0.002 6 L 0.414 0.131 0.227 0.149 0.013 0.041 0.005 0.001 0.017 0.001 0.001 7 E 0.545 0.091 0.140 0.090 0.027 0.038 0.028 0.003 0.029 0.008 0.001 8 S 0.645 0.035 0.117 0.139 0.021 0.008 0.011 0.008 0.004 0.011 0.001 9 K 0.423 0.035 0.054 0.299 0.015 0.047 0.072 0.022 0.028 0.005 0.001 10 K 0.444 0.142 0.190 0.119 0.026 0.036 0.023 0.005 0.012 0.003 0.001 11 D 0.348 0.059 0.143 0.116 0.028 0.110 0.144 0.014 0.036 0.003 0.001 12 E 0.900 0.035 0.018 0.033 0.005 0.005 0.001 0.001 0.002 0.001 0.001 13 I 0.855 0.071 0.032 0.026 0.005 0.007 0.001 0.001 0.003 0.001 0.001 14 R 0.942 0.025 0.010 0.014 0.003 0.002 0.001 0.001 0.003 0.001 0.001 15 C 0.893 0.057 0.015 0.010 0.019 0.003 0.001 0.001 0.001 0.001 0.001 16 C 0.728 0.045 0.024 0.189 0.004 0.005 0.001 0.001 0.004 0.001 0.001 17 Y 0.288 0.119 0.190 0.334 0.027 0.010 0.016 0.004 0.011 0.001 0.001 18 K 0.015 0.009 0.013 0.107 0.006 0.022 0.768 0.037 0.021 0.002 0.001 19 I 0.002 0.211 0.722 0.006 0.007 0.042 0.001 0.001 0.010 0.001 0.001 20 T 0.004 0.168 0.765 0.001 0.039 0.012 0.001 0.001 0.005 0.005 0.001 21 D 0.982 0.001 0.001 0.010 0.001 0.001 0.002 0.004 0.001 0.001 0.001 22 T 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 D 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 L 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 K 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 M 0.956 0.001 0.001 0.041 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 V 0.820 0.015 0.032 0.121 0.002 0.003 0.002 0.001 0.003 0.001 0.001 32 E 0.613 0.034 0.079 0.178 0.012 0.015 0.052 0.007 0.006 0.003 0.001 33 I 0.450 0.125 0.235 0.128 0.023 0.017 0.008 0.002 0.009 0.003 0.001 34 E 0.252 0.034 0.056 0.543 0.008 0.042 0.040 0.006 0.016 0.001 0.001 35 K 0.032 0.281 0.344 0.011 0.126 0.012 0.047 0.003 0.139 0.006 0.001 36 P 0.077 0.033 0.610 0.051 0.003 0.073 0.004 0.001 0.004 0.001 0.143 37 I 0.003 0.561 0.332 0.009 0.045 0.037 0.002 0.001 0.011 0.001 0.001 38 T 0.001 0.181 0.731 0.001 0.038 0.036 0.001 0.001 0.012 0.001 0.001 39 S 0.986 0.002 0.004 0.002 0.001 0.003 0.001 0.001 0.001 0.001 0.001 40 E 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 E 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 D 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 I 0.972 0.001 0.001 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 F 0.163 0.002 0.003 0.830 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 K 0.011 0.001 0.002 0.008 0.001 0.011 0.953 0.010 0.003 0.001 0.001 48 L 0.089 0.452 0.313 0.048 0.027 0.043 0.005 0.001 0.021 0.001 0.001 49 S 0.068 0.057 0.746 0.009 0.020 0.079 0.002 0.001 0.012 0.005 0.001 50 K 0.985 0.002 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 T 0.987 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 T 0.987 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 N 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 S 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 I 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 E 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 L 0.393 0.003 0.006 0.596 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 G 0.018 0.001 0.005 0.010 0.009 0.001 0.130 0.781 0.002 0.044 0.001 65 L 0.067 0.180 0.623 0.037 0.032 0.052 0.004 0.001 0.003 0.001 0.002 66 V 0.014 0.635 0.277 0.006 0.020 0.030 0.001 0.001 0.015 0.001 0.001 67 V 0.010 0.720 0.164 0.006 0.018 0.038 0.001 0.001 0.044 0.001 0.001 68 R 0.017 0.410 0.478 0.002 0.008 0.061 0.001 0.001 0.022 0.001 0.001 69 T 0.026 0.703 0.144 0.015 0.040 0.037 0.003 0.001 0.031 0.001 0.001 70 K 0.023 0.468 0.435 0.007 0.027 0.027 0.001 0.001 0.011 0.001 0.001 71 T 0.044 0.655 0.128 0.025 0.066 0.021 0.003 0.001 0.054 0.002 0.001 72 E 0.066 0.212 0.409 0.099 0.048 0.052 0.046 0.003 0.057 0.006 0.002 73 G 0.042 0.017 0.098 0.025 0.097 0.005 0.044 0.287 0.002 0.381 0.001 74 K 0.195 0.167 0.348 0.180 0.039 0.026 0.018 0.006 0.012 0.005 0.002 75 K 0.184 0.211 0.202 0.181 0.041 0.035 0.072 0.032 0.029 0.011 0.001 76 I 0.067 0.100 0.212 0.184 0.053 0.015 0.297 0.030 0.018 0.023 0.001 77 G 0.025 0.013 0.063 0.029 0.099 0.003 0.086 0.450 0.001 0.230 0.001 78 R 0.017 0.471 0.342 0.004 0.044 0.015 0.005 0.001 0.101 0.001 0.001 79 P 0.057 0.011 0.886 0.003 0.001 0.020 0.001 0.001 0.001 0.001 0.022 80 K 0.101 0.515 0.146 0.094 0.111 0.015 0.003 0.001 0.013 0.001 0.001 81 Y 0.007 0.603 0.126 0.010 0.231 0.008 0.002 0.001 0.011 0.001 0.001 82 Y 0.011 0.787 0.106 0.013 0.031 0.028 0.001 0.001 0.023 0.001 0.001 83 Y 0.005 0.701 0.128 0.006 0.091 0.040 0.001 0.001 0.027 0.001 0.001 84 S 0.006 0.626 0.211 0.004 0.026 0.054 0.002 0.001 0.069 0.001 0.001 85 I 0.104 0.258 0.502 0.027 0.017 0.068 0.003 0.001 0.015 0.002 0.002 86 S 0.171 0.248 0.391 0.019 0.057 0.037 0.005 0.001 0.052 0.017 0.001 87 S 0.959 0.001 0.013 0.015 0.003 0.001 0.002 0.002 0.001 0.003 0.001 88 N 0.900 0.001 0.007 0.052 0.001 0.003 0.008 0.023 0.002 0.002 0.001 89 I 0.976 0.001 0.002 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 L 0.993 0.001 0.003 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 E 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 K 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 I 0.966 0.001 0.001 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 R 0.992 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 N 0.959 0.001 0.002 0.033 0.001 0.001 0.001 0.002 0.001 0.001 0.001 96 D 0.849 0.002 0.006 0.115 0.001 0.014 0.003 0.001 0.009 0.001 0.001 97 L 0.965 0.001 0.001 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.001 98 L 0.990 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 N 0.952 0.001 0.001 0.042 0.001 0.001 0.001 0.002 0.001 0.001 0.001 100 C 0.979 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 A 0.989 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 K 0.991 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 R 0.959 0.001 0.002 0.036 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 M 0.742 0.017 0.027 0.204 0.002 0.003 0.001 0.001 0.003 0.001 0.001 105 E 0.522 0.059 0.087 0.139 0.016 0.045 0.095 0.009 0.025 0.003 0.001 106 L 0.451 0.167 0.240 0.095 0.014 0.016 0.004 0.002 0.010 0.002 0.001 107 A 0.373 0.120 0.194 0.179 0.032 0.030 0.029 0.011 0.026 0.004 0.001 108 A 0.251 0.142 0.268 0.122 0.047 0.058 0.051 0.015 0.038 0.007 0.001 109 T 0.335 0.201 0.175 0.150 0.064 0.023 0.017 0.008 0.016 0.011 0.001