# List of top-scoring protein chains for T0265.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q1hA 110 1.37e-09 unknown_sccs -262 1ku9A 152 3.58e-09 a.4.5.36 77544 1mkmA 249 1.25e-05 a.4.5.33 79242 d.110.2.2 79243 1lnwA 147 2.03e-05 a.4.5.28 78104 1i1gA 141 2.14e-04 a.4.5.32 65982 d.58.4.2 65983 1lj9A 144 2.27e-04 a.4.5.28 78035 1r22A 122 9.95e-04 1r1tA 122 2.09e-03 1sd6A 123 4.30e-03 unknown_sccs -237 1okrA 123 4.55e-03 unknown_sccs -235 1ft9A 222 5.46e-03 1ft9A a.4.5.4 16107 b.82.3.1 28131 1jgsA 138 6.20e-03 a.4.5.28 66683 1ri7A 171 6.87e-03 a.4.5.32 -224 d.58.4.2 -9966 1s3jA 155 7.00e-03 a.4.5.28 -227 1p6rA 82 1.00e-02 unknown_sccs -245 1r1uA 106 2.61e-02 1fzpB 123 3.01e-02 1fznD a.4.5.28 19008 1qgpA 77 3.35e-02 1qbjA a.4.5.19 16158 1p4xA 250 3.56e-02 a.4.5.28 87784 a.4.5.28 87785 1qbjA 81 4.23e-02 1qbjA a.4.5.19 16155 1ub9A 100 6.73e-02 a.4.5.28 -231 1mzbA 136 7.54e-02 unknown_sccs -266 1fseA 74 1.30e-01 1fseA a.4.6.2 60000 1hw5A 210 1.73e-01 2cgpA a.4.5.4 16098 b.82.3.2 28137 1o3sA 200 1.73e-01 a.4.5.4 86609 b.82.3.2 86610 1i6xA 209 1.80e-01 a.4.5.4 83673 b.82.3.2 83674 1i5zA 209 1.80e-01 a.4.5.4 83669 b.82.3.2 83670 1g6nA 210 1.80e-01 2cgpA a.4.5.4 16100 b.82.3.2 28139 1o3tA 200 2.15e-01 a.4.5.4 86611 b.82.3.2 86612 1ruoA 209 2.25e-01 2cgpA a.4.5.4 16105 b.82.3.2 28144 1cgpA 205 2.75e-01 a.4.5.4 16096 b.82.3.2 28135 1hsjA 487 2.93e-01 4mbp a.4.5.28 61237 c.94.1.1 61238 1t95A 240 3.67e-01 1p9qC 256 3.69e-01 1tbxA 99 3.88e-01 6paxA 133 4.15e-01 6paxA a.4.1.5 64758 a.4.1.5 64759 1bia 321 4.52e-01 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1i1sA 96 5.18e-01 1bjaA a.4.5.9 16124 1j5yA 187 5.35e-01 a.4.5.1 71592 d.94.2.1 71593 1bjaA 95 5.41e-01 1bjaA a.4.5.9 16122 1in5A 334 5.79e-01 1hqcA a.4.5.11 62599 c.37.1.20 62600 1in4A 334 5.82e-01 1hqcA a.4.5.11 62597 c.37.1.20 62598 1in7A 334 5.82e-01 1hqcA a.4.5.11 62603 c.37.1.20 62604 1in8A 334 5.86e-01 1hqcA a.4.5.11 62605 c.37.1.20 62606 1j7kA 334 5.88e-01 1hqcA a.4.5.11 62695 c.37.1.20 62696 1in6A 334 5.90e-01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1on1A 142 6.39e-01 a.4.5.24 87099 a.76.1.1 87100 1rifA 282 6.66e-01 unknown_sccs -7265 1lvaA 258 8.01e-01 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 1on2A 142 8.28e-01 a.4.5.24 87103 a.76.1.1 87104 1b1bA 140 8.93e-01 1bi0 a.4.5.24 16215 a.76.1.1 18421 1cf7B 95 9.54e-01 1cf7B a.4.5.17 16152 1o5lA 213 9.80e-01 b.82.3.2 -4915 1je8A 82 1.19e+00 a.4.6.2 77108 1f5tA 121 1.47e+00 1bi0 a.4.5.24 16203 a.76.1.1 18409 1lea 84 1.60e+00 1lea a.4.5.2 16085 1k78A 149 1.62e+00 a.4.1.5 68255 a.4.1.5 68256 1uthA 315 1.67e+00 1res 43 1.69e+00 1ret a.4.1.2 16023 1uthB 315 1.70e+00 1utbA 315 1.71e+00 1utbB 315 1.71e+00 1mgtA 174 1.99e+00 1mgtA a.4.2.1 16078 c.55.7.1 33753 1vz0A 230 2.00e+00 1bw6A 56 2.05e+00 1bw6A a.4.1.7 16052 1fx7A 230 2.16e+00 1bi0 a.4.5.24 60088 a.76.1.1 60089 b.34.1.2 60090 1fehA 574 2.17e+00 1fehA c.96.1.1 36015 d.15.4.2 37690 d.58.1.5 38998 1ofhA 310 2.19e+00 c.37.1.20 86948 1hqcA 324 2.24e+00 1hqcA a.4.5.11 16127 c.37.1.20 32424 1hlvA 131 2.75e+00 a.4.1.7 65854 a.4.1.7 65855 1ixsB 318 2.79e+00 a.4.5.11 76933 c.37.1.20 76934 1w2wA 211 2.85e+00 1dwuA 213 2.87e+00 1cjsA e.24.1.1 43355 1jljA 189 3.08e+00 c.57.1.1 63169 1ixrC 312 3.18e+00 a.4.5.11 76930 c.37.1.20 76931 1ihcA 188 3.26e+00 1di6A c.57.1.1 62379 1s7oA 113 3.28e+00 1ns7A 347 3.31e+00 b.30.5.4 80707 1j75A 67 3.37e+00 a.4.5.19 62673 1bm9A 122 3.48e+00 1bm9A a.4.5.7 16116 1ns4A 347 3.67e+00 b.30.5.4 80703 1a04A 215 3.68e+00 1a04A a.4.6.2 16234 c.23.1.1 31089 1nszA 347 3.70e+00 b.30.5.4 80724 1jhfA 202 3.71e+00 a.4.5.2 63057 b.87.1.1 63058 1jhhA 202 3.71e+00 a.4.5.2 63060 b.87.1.1 63061 1mmuA 347 3.77e+00 b.30.5.4 79303 1nsuA 347 3.80e+00 b.30.5.4 80718 1ns8A 347 4.02e+00 b.30.5.4 80709 1dpuA 99 4.04e+00 1dpuA a.4.5.16 16150 1rrzA 86 4.21e+00 1hw1A 239 4.33e+00 1e2xA a.4.5.6 16111 a.78.1.1 18441 1e2xA 243 4.33e+00 1e2xA a.4.5.6 16113 a.78.1.1 18443 1oyiA 82 4.36e+00 a.4.5.19 -292 1g3tA 226 4.61e+00 a.4.5.24 65127 a.76.1.1 65128 b.34.1.2 65129 2tdx 226 4.62e+00 1bi0 a.4.5.24 16201 a.76.1.1 18407 1ecrA 309 4.73e+00 1ecrA e.2.1.1 42678 1g41A 444 4.74e+00 1do0A c.37.1.20 32450 2dtr 226 4.83e+00 1bi0 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1powA 585 4.83e+00 1poxA c.31.1.3 31733 c.36.1.5 31797 c.36.1.9 31798 1p92A 226 4.87e+00 1j0rA 122 4.95e+00 a.4.5.7 -257 1g3yA 226 4.95e+00 a.4.5.24 65136 a.76.1.1 65137 b.34.1.2 65138 1vhoA 346 5.00e+00 unknown_sccs -4283 c.56.5.4 -7893 1a06 332 5.10e+00 1tkiA d.144.1.7 41634 1c0wA 225 5.17e+00 1bi0 a.4.5.24 16211 a.76.1.1 18417 b.34.1.2 24455 1uh9A 325 5.54e+00 1pdnC 128 5.60e+00 6paxA a.4.1.5 16047 1nssA 347 5.61e+00 b.30.5.4 80716 1b66A 140 5.93e+00 1b66A d.96.1.2 40657 1go3F 107 6.19e+00 a.60.8.2 65407 2apr 325 6.25e+00 2er7E b.50.1.2 26819 1fwzA 226 6.43e+00 a.4.5.24 60077 a.76.1.1 60078 b.34.1.2 60079 5pal 109 7.00e+00 1a75A a.39.1.4 17215 1ggxA 223 7.16e+00 1ggxA d.22.1.1 38367 2tct 207 7.18e+00 2tct a.4.1.9 16063 a.121.1.1 19240 1bjz 207 7.18e+00 2tct a.4.1.9 16065 a.121.1.1 19242 1qpiA 203 7.31e+00 2tct a.4.1.9 16072 a.121.1.1 19249 1g7kA 234 7.35e+00 1ggxA d.22.1.1 38371 1cf7A 76 7.47e+00 1cf7B a.4.5.17 16151 1nhwA 229 7.79e+00 c.2.1.2 80518 3sc2A 259 7.80e+00 1ivyA c.69.1.5 34648 1whsA 255 7.98e+00 1ivyA c.69.1.5 34649 1whtA 256 7.99e+00 1ivyA c.69.1.5 34646 1bcsA 263 8.04e+00 1ivyA c.69.1.5 34647 1oi6A 205 8.17e+00 1j24A 143 8.22e+00 c.52.1.20 84008 1dcuA 357 8.26e+00 1frpA e.7.1.1 42943 1dbzA 357 8.31e+00 1frpA e.7.1.1 42951 1tlqA 189 8.33e+00 2trt 217 8.36e+00 2tct a.4.1.9 16064 a.121.1.1 19241 1r9cA 139 8.39e+00 d.32.1.2 -9557 1o1zA 234 8.42e+00 c.1.18.3 86555 1o8vA 134 8.70e+00 b.60.1.2 86680 1bj4A 470 9.22e+00 1bj4A c.67.1.4 34479 1l4uA 176 9.27e+00 c.37.1.2 73568 1mnp 357 9.30e+00 1arv a.93.1.1 18668 1jbjA 186 9.75e+00 b.1.1.4 66482 b.1.1.4 66483 1hh2P 344 9.99e+00 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1mn2 357 1.02e+01 1arv a.93.1.1 18666 1mn1 357 1.03e+01 1arv a.93.1.1 18667 8rucI 123 1.07e+01 1rboC d.73.1.1 39629 1l2fA 369 1.09e+01 b.40.4.5 -3933 d.52.3.1 -9777 d.52.3.1 -9778 d.202.1.1 -9816 1j3nA 408 1.10e+01 c.95.1.1 84074 c.95.1.1 84075 1jhgA 101 1.12e+01 1jhgA a.4.12.1 19009 1rcsA 105 1.13e+01 1jhgA a.4.12.1 19025 2wrpR 107 1.13e+01 1jhgA a.4.12.1 19010 3wrp 108 1.13e+01 1jhgA a.4.12.1 19015 1troA 108 1.15e+01 1jhgA a.4.12.1 19011 1trrA 107 1.17e+01 1jhgA a.4.12.1 19017 1g4aE 443 1.17e+01 1do0A c.37.1.20 32444 1e94E 449 1.18e+01 1do0A c.37.1.20 32442 1do0A 442 1.18e+01 1do0A c.37.1.20 32432 1uxc 65 1.21e+01 1uxc a.35.1.5 17119 1tc3C 51 1.25e+01 1tc3C a.4.1.2 16025 1qmbA 326 1.30e+01 1ovaA e.1.1.1 42633 1ijeB 90 1.31e+01 1b64 d.58.12.1 62488 1f60B 94 1.32e+01 1b64 d.58.12.1 39307 2fokA 579 1.34e+01 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1q5rA 259 1.39e+01 d.153.1.4 -11440 1q5qA 259 1.39e+01 d.153.1.4 -11433 1g3qA 237 1.41e+01 1hyqA c.37.1.10 60237 1ky8A 501 1.41e+01 c.82.1.1 77628 1dx5I 118 1.46e+01 1dx5I g.3.11.1 44302 g.3.11.1 44303 g.3.11.1 44304 1ir1S 123 1.46e+01 d.73.1.1 71290 1gdtA 183 1.46e+01 2rslA a.4.1.2 16021 c.53.1.1 33348 1poxA 585 1.50e+01 1poxA c.31.1.3 31731 c.36.1.5 31793 c.36.1.9 31794 1bjt 793 1.50e+01 1bjt e.11.1.1 43249 1or7A 194 1.52e+01 a.4.13.2 87332 a.177.1.1 87333 1guxA 218 1.59e+01 1guxA a.74.1.3 18388 1jx1A 222 1.59e+01 d.36.1.1 71925 1qwkA 317 1.60e+01 c.1.7.1 -5237 1fokA 576 1.67e+01 2fokA a.4.5.12 16137 a.4.5.12 16138 a.4.5.12 16139 c.52.1.12 33325 1eyqA 222 1.71e+01 1eypA d.36.1.1 38534 1qupA 222 1.72e+01 1qupA b.1.8.1 22301 d.58.17.1 39352 1oa8A 133 1.77e+01 unknown_sccs -5142 1jk9B 249 1.82e+01 b.1.8.1 63150 d.58.17.1 63151 3rubS 123 1.82e+01 1rboC d.73.1.1 39616 1larA 575 1.82e+01 1larA c.45.1.2 32693 c.45.1.2 32694 1senA 164 1.92e+01 5pep 326 1.93e+01 1smrA b.50.1.2 26845 4rubS 123 1.95e+01 1rboC d.73.1.1 39621 1iruH 205 1.96e+01 d.153.1.4 71359 1i9dA 141 1.96e+01 c.47.1.12 66098 1sxrA 183 1.97e+01 1jvr 137 2.05e+01 1jvr a.61.1.2 18132 1avyA 74 2.14e+01 1avyB h.1.17.1 45656 1jx0A 222 2.15e+01 d.36.1.1 71923 1f34A 326 2.22e+01 1smrA b.50.1.2 26848 1ctm 250 2.27e+01 1hcz b.2.6.1 22465 b.84.2.2 28251 1ass 159 2.27e+01 1a6dA c.8.5.2 30818 1hcz 252 2.27e+01 1hcz b.2.6.1 22464 b.84.2.2 28250 4pep 326 2.28e+01 1smrA b.50.1.2 26843 1ile 821 2.29e+01 1ile a.27.1.1 16924 b.51.1.1 26889 c.26.1.1 31591 1dbhA 354 2.31e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1q6dA 495 2.34e+01 c.1.8.1 -5301 1b5pA 385 2.35e+01 c.67.1.1 -8133 5bj4A 385 2.36e+01 c.67.1.1 -8139 5bj3A 385 2.37e+01 c.67.1.1 -8135 1vh4A 435 2.37e+01 unknown_sccs -4794 1b5oA 385 2.40e+01 c.67.1.1 -8131 1fukA 165 2.43e+01 1fukA c.37.1.19 32409 3psg 370 2.44e+01 1smrA b.50.1.2 26841 1v3eA 431 2.49e+01 b.68.1.1 -4584 1n4mA 345 2.52e+01 a.74.1.3 79994 a.74.1.3 79995 1p85K 136 2.62e+01 i.1.1.1 87880 1fx0A 507 2.65e+01 a.69.1.1 60080 b.49.1.1 60081 c.37.1.11 60082 1liyA 528 2.71e+01 b.58.1.1 78006 c.1.12.1 78007 c.49.1.1 78008 1liuA 528 2.71e+01 b.58.1.1 77970 c.1.12.1 77971 c.49.1.1 77972 1lixA 528 2.72e+01 b.58.1.1 77994 c.1.12.1 77995 c.49.1.1 77996 1vk3A 615 2.72e+01 d.79.4.1 -10416 d.79.4.1 -10417 d.139.1.1 -11154 d.139.1.1 -11155 1liwA 528 2.72e+01 b.58.1.1 77982 c.1.12.1 77983 c.49.1.1 77984 1lab 80 2.73e+01 1ghj b.84.1.1 28226 1dj7B 75 2.76e+01 1dj7B b.34.4.3 24598 1n8pA 393 2.82e+01 c.67.1.3 80304 1ichA 112 2.86e+01 a.77.1.2 71182 1hn4A 131 2.87e+01 a.133.1.2 65893 1bkgA 385 2.89e+01 1bjwA c.67.1.1 34351 1jlaB 440 2.92e+01 e.8.1.2 66835 1h12A 405 2.95e+01 a.102.1.2 83447 1a6i 217 2.98e+01 2tct a.4.1.9 16066 a.121.1.1 19243 1rztA 331 2.99e+01 a.60.6.1 -1023 a.60.12.1 -1030 d.218.1.2 -9807 1i1nA 226 3.02e+01 c.66.1.7 71102 1f9nA 149 3.05e+01 a.4.5.3 64990 d.74.2.1 64991 1twiA 434 3.07e+01 1tufA 434 3.07e+01 1v3hA 495 3.07e+01 1b69A 69 3.12e+01 2bb8 d.10.1.1 37479 1ejiA 478 3.17e+01 1bj4A c.67.1.4 34475 1p65A 73 3.24e+01 unknown_sccs -10331 1nrfA 262 3.33e+01 e.3.1.1 -11780 1sxl 97 3.35e+01 1b7fA d.58.7.1 39180 1vzoA 355 3.40e+01 1ka2A 499 3.42e+01 d.92.1.5 77305 1ek4A 418 3.47e+01 1dd8A c.95.1.1 59436 c.95.1.1 59437 1mejA 223 3.56e+01 c.65.1.1 79029 1oeqA 418 3.59e+01 1meoA 209 3.60e+01 c.65.1.1 79035 1ordA 730 3.60e+01 1ordA c.23.1.4 31274 c.67.1.5 34503 d.125.1.1 41124 1og8A 406 3.61e+01 c.95.1.1 -8725 c.95.1.1 -8726 1h4fA 406 3.62e+01 c.95.1.1 -8717 c.95.1.1 -8718 1d8uA 166 3.63e+01 2gdm a.1.1.2 15233 1r6hA 172 3.63e+01 c.45.1.1 -7331 1bb8 71 3.75e+01 2bb8 d.10.1.1 37478 1uypA 432 3.76e+01 unknown_sccs -3480 unknown_sccs -4554 1kqfB 294 3.77e+01 d.58.1.5 75900 f.23.22.1 75901 1v3iA 495 3.82e+01 1pzrA 60 3.84e+01 unknown_sccs -815 1rt3B 440 3.89e+01 1rthA e.8.1.2 43053 1ezuA 142 3.89e+01 1sluA b.16.1.1 23695 1f91A 406 3.90e+01 1dd8A c.95.1.1 59713 c.95.1.1 59714 1s1xB 440 3.90e+01 1mrzA 293 3.90e+01 b.43.5.1 -4048 c.26.1.3 -6616 1vrtB 440 3.91e+01 1rthA e.8.1.2 43024 1s1wB 440 3.91e+01 1ukpA 495 3.92e+01 c.1.8.1 -5296 1q6cA 495 3.92e+01 c.1.8.1 -5300 1ukoA 495 3.92e+01 c.1.8.1 -5292 1q6gA 495 3.93e+01 c.1.8.1 -5304 1gs5A 258 3.93e+01 c.73.1.2 70395 1s1tB 440 3.93e+01 1fkoB 440 3.93e+01 1rthA e.8.1.2 43095 1jlgB 440 3.95e+01 e.8.1.2 66850 1dd8A 406 3.98e+01 1dd8A c.95.1.1 35932 c.95.1.1 35933