# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q1hA 110 1.09e-11 unknown_sccs -262 1lnwA 147 5.17e-10 a.4.5.28 78104 1lj9A 144 2.75e-07 a.4.5.28 78035 1mkmA 249 3.13e-07 a.4.5.33 79242 d.110.2.2 79243 1s3jA 155 1.75e-06 a.4.5.28 -227 1ub9A 100 9.43e-06 a.4.5.28 -231 1okrA 123 1.19e-05 unknown_sccs -235 1r1uA 106 2.85e-05 1r1tA 122 3.70e-05 1p4xA 250 4.00e-05 a.4.5.28 87784 a.4.5.28 87785 1smtA 122 7.37e-05 1smtA a.4.5.5 16109 1bjaA 95 9.31e-05 1bjaA a.4.5.9 16122 1tbxA 99 7.34e-04 1bia 321 8.35e-04 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1j5yA 187 8.78e-04 a.4.5.1 71592 d.94.2.1 71593 1mzbA 136 5.30e-03 unknown_sccs -266 1fp2A 352 7.35e-03 1fpxA a.4.5.29 59941 c.66.1.12 59942 6paxA 133 8.75e-03 6paxA a.4.1.5 64758 a.4.1.5 64759 1bm9A 122 1.05e-02 1bm9A a.4.5.7 16116 1p9qC 256 1.17e-02 1t95A 240 1.19e-02 1fp1D 372 1.36e-02 1fpqA a.4.5.29 59939 c.66.1.12 59940 1on2A 142 1.54e-02 a.4.5.24 87103 a.76.1.1 87104 1in6A 334 2.27e-02 1hqcA a.4.5.11 62601 c.37.1.20 62602 1qbjA 81 2.87e-02 1qbjA a.4.5.19 16155 1fseA 74 3.36e-02 1fseA a.4.6.2 60000 1in4A 334 3.51e-02 1hqcA a.4.5.11 62597 c.37.1.20 62598 1jhfA 202 3.78e-02 a.4.5.2 63057 b.87.1.1 63058 2dtr 226 4.64e-02 1bi0 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1hw1A 239 4.66e-02 1e2xA a.4.5.6 16111 a.78.1.1 18441 1je8A 82 8.38e-02 a.4.6.2 77108 1mgtA 174 8.86e-02 1mgtA a.4.2.1 16078 c.55.7.1 33753 1hw5A 210 1.27e-01 2cgpA a.4.5.4 16098 b.82.3.2 28137 1r7jA 95 1.50e-01 1k78A 149 1.83e-01 a.4.1.5 68255 a.4.1.5 68256 2tct 207 1.89e-01 2tct a.4.1.9 16063 a.121.1.1 19240 1cf7B 95 1.97e-01 1cf7B a.4.5.17 16152 1hlvA 131 3.14e-01 a.4.1.7 65854 a.4.1.7 65855 1ecrA 309 3.15e-01 1ecrA e.2.1.1 42678 1lvaA 258 3.53e-01 a.4.5.35 74276 a.4.5.35 74277 a.4.5.35 74278 a.4.5.35 74279 1kgsA 225 5.88e-01 a.4.6.1 68596 c.23.1.1 68597 1s7oA 113 8.17e-01 1o8vA 134 8.18e-01 b.60.1.2 86680 1res 43 8.79e-01 1ret a.4.1.2 16023 1gxqA 106 9.66e-01 a.4.6.1 70721 1hh2P 344 1.07e+00 b.40.4.5 65835 d.52.3.1 65836 d.52.3.1 65837 d.202.1.1 65838 1lci 550 1.11e+00 1lci e.23.1.1 43349 1j75A 67 1.42e+00 a.4.5.19 62673 1jljA 189 1.45e+00 c.57.1.1 63169 1fxlA 167 1.45e+00 1b7fA d.58.7.1 39183 d.58.7.1 39184 1ihcA 188 1.52e+00 1di6A c.57.1.1 62379 1urnA 97 1.64e+00 1urnA d.58.7.1 39153 1fehA 574 1.83e+00 1fehA c.96.1.1 36015 d.15.4.2 37690 d.58.1.5 38998 1p4wA 99 1.96e+00 a.4.6.2 87783 1oyiA 82 2.30e+00 a.4.5.19 -292 8rucI 123 2.33e+00 1rboC d.73.1.1 39629 1o57A 291 2.35e+00 unknown_sccs -249 c.61.1.1 -7960 1mb3A 124 2.42e+00 c.23.1.1 78907 1or7A 194 2.58e+00 a.4.13.2 87332 a.177.1.1 87333 1pp7U 131 2.66e+00 unknown_sccs -304 1jj2O 148 2.82e+00 1ffkM a.94.1.1 63100 1s72P 149 2.99e+00 1qzzA 374 3.08e+00 a.4.5.29 -277 c.66.1.12 -8045 1opc 110 3.16e+00 1opc a.4.6.1 16231 1ixcA 294 3.20e+00 a.4.5.37 83764 c.94.1.1 83765 1lmb3 92 3.29e+00 1lmb3 1rifA 282 3.74e+00 unknown_sccs -7265 1owlA 484 3.98e+00 a.99.1.1 -1296 c.28.1.1 -6646 1qhlA 227 4.22e+00 1qhlA c.37.1.12 32382 1whtA 256 4.35e+00 1ivyA c.69.1.5 34646 1whsA 255 4.57e+00 1ivyA c.69.1.5 34649 1mrzA 293 4.96e+00 b.43.5.1 -4048 c.26.1.3 -6616 1qnf 484 5.45e+00 1qnf a.99.1.1 18777 c.28.1.1 31632 1mr3F 181 5.48e+00 c.37.1.8 79422 1vjhA 122 5.76e+00 d.129.3.1 -11037 1sedA 117 5.86e+00 1nu4A 97 6.07e+00 d.58.7.1 80731 1irsA 112 6.28e+00 1qqgA b.55.1.2 26991 1b9mA 265 6.45e+00 1b9mA a.4.5.8 16118 b.40.6.2 58938 b.40.6.2 58939 1sluA 142 6.46e+00 1sluA b.16.1.1 23685 1r4xA 275 6.49e+00 unknown_sccs -2846 unknown_sccs -10776 1k8tA 510 6.62e+00 e.41.1.1 68316 1rhcA 330 6.83e+00 c.1.16.3 -5606 1rztA 331 7.32e+00 a.60.6.1 -1023 a.60.12.1 -1030 d.218.1.2 -9807 1g24A 211 7.82e+00 1g24A d.166.1.1 42270 1f60B 94 8.05e+00 1b64 d.58.12.1 39307 1cy9A 264 8.55e+00 1ecl e.10.1.1 43236 1vh4A 435 8.78e+00 unknown_sccs -4794 1nogA 177 9.07e+00 a.25.2.2 85923 1eo0A 77 9.19e+00 1eo0A a.48.3.1 17790 1gv3A 248 9.19e+00 a.2.11.1 70585 d.44.1.1 70586 1v39 322 9.33e+00 3mag c.66.1.25 34206 1avyA 74 9.40e+00 1avyB h.1.17.1 45656 1o1zA 234 9.84e+00 c.1.18.3 86555 1fhoA 119 9.91e+00 1fhoA b.55.1.1 26982 1aisB 200 1.02e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1b0nA 111 1.05e+01 1b0nA a.34.1.1 17001 a.35.1.3 17064 1jggA 60 1.07e+01 2hddA a.4.1.1 62950 1r71A 178 1.12e+01 1gpc 218 1.14e+01 1gpc b.40.4.7 25393 1burS 123 1.15e+01 1rboC 1bc8C 93 1.16e+01 1awcA a.4.5.21 16168 1ap6A 198 1.17e+01 1avmA a.2.11.1 15746 d.44.1.1 38705 1m2oA 768 1.22e+01 a.71.2.1 78480 b.2.8.1 78481 c.62.1.2 78482 d.109.2.1 78483 g.41.10.1 78484 1hstA 90 1.31e+01 1hstA a.4.5.13 16140 1r9cA 139 1.33e+01 d.32.1.2 -9557 1vp9 322 1.34e+01 3mag c.66.1.25 34210 1vpt 348 1.37e+01 3mag c.66.1.25 34207 3mag 307 1.39e+01 3mag c.66.1.25 34205 1g2hA 61 1.42e+01 1g2hA unknown_sccs 60224 1emvB 134 1.43e+01 1bxiB d.4.1.1 37135 1rzsA 61 1.43e+01 1pl4A 198 1.43e+01 a.2.11.1 -132 d.44.1.1 -9733 1r8sA 164 1.49e+01 c.37.1.8 -7082 1n0nA 199 1.52e+01 a.2.11.1 79750 d.44.1.1 79751 1rkeA 262 1.52e+01 a.24.9.1 -582 a.24.9.1 -583 1oiaA 95 1.56e+01 d.58.7.1 87051 1n25A 368 1.58e+01 c.37.1.20 85264 1fjgI 128 1.62e+01 1fjfI d.14.1.1 37559 1b6rA 355 1.68e+01 1b6rA b.84.2.1 28241 c.30.1.1 31648 d.142.1.2 41493 1louA 101 1.72e+01 1ris d.58.14.1 39323 1ox3A 109 1.72e+01 h.1.17.1 -12938 1dik 874 1.74e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1k07A 263 1.75e+01 d.157.1.1 77218 1e20A 209 1.77e+01 1e20A c.34.1.1 31759 1pq1A 196 1.93e+01 f.1.4.1 -12055 1umqA 81 1.93e+01 unknown_sccs -203 1avqA 228 1.94e+01 1avqA c.52.1.13 33326 1vkeA 133 1.97e+01 1uptA 171 2.05e+01 c.37.1.8 -7085 1kblA 873 2.06e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1o3yA 166 2.11e+01 c.37.1.8 86618 1p8kZ 254 2.11e+01 d.95.2.1 -10648 d.95.2.1 -10649 1ile 821 2.12e+01 1ile a.27.1.1 16924 b.51.1.1 26889 c.26.1.1 31591 1p9yA 121 2.24e+01 unknown_sccs -8996 1pea 385 2.25e+01 1pea c.93.1.1 35662 1pru 56 2.27e+01 1pru a.35.1.5 17104 1nx8A 273 2.29e+01 b.82.2.8 86374 1jy2P 48 2.31e+01 h.1.8.1 67442 3rubS 123 2.36e+01 1rboC d.73.1.1 39616 1lvwA 295 2.42e+01 c.68.1.6 84723 1a04A 215 2.44e+01 1a04A a.4.6.2 16234 c.23.1.1 31089 1fnnA 389 2.44e+01 1fnnA a.4.5.11 16129 c.37.1.20 32426 1r69 69 2.44e+01 1r69 a.35.1.2 17028 1aoy 78 2.47e+01 1aoy a.4.5.3 16087 1q06A 135 2.51e+01 a.6.1.3 -375 1fy7A 278 2.62e+01 1fy7A d.108.1.1 40817 1gjnA 153 2.69e+01 a.1.1.2 70191 1hurA 180 2.74e+01 1hurA c.37.1.8 32052 1mml 265 2.79e+01 1mml e.8.1.2 43015 1jg5A 83 2.84e+01 d.205.1.1 66666 1oglA 283 2.89e+01 unknown_sccs -1512 1r4aA 165 2.92e+01 c.37.1.8 -7089 1dwtA 153 2.93e+01 1a6m a.1.1.2 15190 1tc3C 51 2.99e+01 1tc3C a.4.1.2 16025 1g2cB 43 2.99e+01 1g2cB 1fr2B 134 3.00e+01 d.4.1.1 83257 1mp1A 111 3.09e+01 unknown_sccs -996 1jeoA 180 3.14e+01 c.80.1.3 66611 1f7uA 607 3.15e+01 1bs2A a.27.1.1 59673 c.26.1.1 59674 d.67.2.1 59675 1g8fA 511 3.28e+01 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1a4pA 96 3.32e+01 1b4cA a.39.1.2 17176 1g1eB 89 3.34e+01 1g1eB a.59.1.1 17931 1r31A 428 3.39e+01 d.58.20.1 -10108 d.179.1.1 -11716 1vj7A 393 3.52e+01 unknown_sccs -1265 unknown_sccs -9814 1guxA 218 3.52e+01 1guxA a.74.1.3 18388 1go3F 107 3.57e+01 a.60.8.2 65407 1imjA 210 3.61e+01 c.69.1.23 71246 1e19A 314 3.72e+01 1b7bA c.73.1.1 34967 1qo7A 394 3.86e+01 1qo7A c.69.1.11 34697 1bu8A 452 3.86e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1w2wA 211 3.87e+01 1rk8A 165 3.90e+01 d.58.7.1 -10018 1ku3A 73 3.96e+01 a.4.13.2 73000