PFRMAT RR
TARGET T0265
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
MMKEKLESKKDEIRCCYKITDTDVAVLLKMVEIEKPITSEELADIFKLSK
TTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLLNC
AKRMELAAT
15 100 0 8 0.5474
50 73 0 8 0.48705
37 46 0 8 0.35785
13 46 0 8 0.3553
89 104 0 8 0.3264
33 54 0 8 0.31875
78 100 0 8 0.30005
45 63 0 8 0.29495
23 68 0 8 0.28135
16 46 0 8 0.27965
13 42 0 8 0.2703
23 56 0 8 0.2635
6 97 0 8 0.25755
15 54 0 8 0.255
25 66 0 8 0.2261
53 66 0 8 0.22015
13 37 0 8 0.20655
15 56 0 8 0.1938
57 83 0 8 0.1836
24 83 0 8 0.1836
END