# List of top-scoring protein chains for T0264.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pjqA 457 9.86e-38 c.2.1.11 -5904 c.90.1.1 -8611 e.37.1.1 -12004 1pjtA 457 9.91e-38 c.2.1.11 -5908 c.90.1.1 -8615 e.37.1.1 -12008 1cbf 285 5.14e-33 1cbf c.90.1.1 35587 2cbf 234 9.50e-33 1cbf c.90.1.1 35588 1vhvA 268 2.56e-27 c.90.1.1 -8619 1oi7A 288 4.49e-01 c.2.1.8 87049 c.23.4.1 87050 1mtoA 319 7.64e-01 c.89.1.1 79458 1b5tA 275 9.88e-01 1b5tA c.1.23.1 29676 1iz7A 295 1.04e+00 c.69.1.8 76982 1cv2A 296 1.04e+00 1bn6A c.69.1.8 34680 1g42A 296 1.04e+00 c.69.1.8 65139 1mj5A 302 1.04e+00 c.69.1.8 -8326 4pfk 319 1.14e+00 3pfk c.89.1.1 35582 6pfkA 319 1.30e+00 3pfk c.89.1.1 35583 1bgf 124 1.74e+00 1bgf a.90.1.1 18537 1diwA 441 1.81e+00 1a8d b.29.1.6 24264 b.42.4.2 25609 1dllA 441 1.83e+00 1a8d b.29.1.6 24263 b.42.4.2 25608 1dfqA 444 1.83e+00 1a8d b.29.1.6 24267 b.42.4.2 25612 1a8d 452 1.86e+00 1a8d b.29.1.6 24262 b.42.4.2 25607 1d0hA 469 1.87e+00 1a8d b.29.1.6 24265 b.42.4.2 25610 1pv5A 264 1.90e+00 unknown_sccs -10182 1fv3A 472 1.91e+00 b.29.1.6 60038 b.42.4.2 60039 1de8A 276 1.96e+00 1bix d.151.1.1 41788 1dewA 279 1.98e+00 1bix d.151.1.1 41786 1bix 287 2.05e+00 1bix d.151.1.1 41781 1hd7A 318 2.17e+00 1bix d.151.1.1 41780 1fsz 372 2.51e+00 1fsz c.32.1.1 31750 d.79.2.1 39802 1l9gA 192 2.76e+00 c.18.1.2 84568 1vk2A 204 2.87e+00 c.18.1.2 -6326 1kliH 254 3.08e+00 b.47.1.2 77435 1gdhA 320 5.09e+00 1gdhA c.2.1.4 30095 c.23.12.1 31355 1mwmA 320 5.13e+00 c.55.1.1 79580 c.55.1.1 79581 2pfkC 320 5.46e+00 3pfk c.89.1.1 35579 1pfkA 320 5.48e+00 3pfk c.89.1.1 35575 1ofuA 320 5.55e+00 c.32.1.1 86972 d.79.2.1 86973 1bl0A 129 7.98e+00 1d5yA a.4.1.8 16053 a.4.1.8 16054 1jfrA 262 8.01e+00 1jfrA c.69.1.16 34724 1rhzA 436 8.35e+00 unknown_sccs -12299 1rh5A 436 8.54e+00 unknown_sccs -12298 1o94A 729 9.18e+00 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1djqA 729 9.19e+00 2tmdA c.1.4.1 28614 c.3.1.1 30315 c.4.1.1 30600 1st3 269 9.21e+00 1gci c.41.1.1 32504 1e4fT 419 9.76e+00 1e4fT c.55.1.1 33453 c.55.1.1 33454 1kxjA 205 9.77e+00 c.23.16.1 73153 1ah2 269 9.79e+00 1gci c.41.1.1 32542 1iavA 269 1.01e+01 1gci c.41.1.1 62125 1k9vF 201 1.01e+01 c.23.16.1 68365 1nd7A 374 1.03e+01 d.148.1.1 -11394 1mpt 269 1.04e+01 1gci c.41.1.1 32541 1gci 269 1.05e+01 1gci c.41.1.1 32503 1c9jA 269 1.05e+01 1gci c.41.1.1 32507 1c9nA 269 1.09e+01 1gci c.41.1.1 32505 1bthH 259 1.12e+01 5ptp 1ptmA 329 1.14e+01 unknown_sccs -8456 1ps6A 328 1.17e+01 unknown_sccs -8458 1pxuA 131 1.19e+01 1jc7A 131 1.20e+01 1jc7A b.40.3.2 62873 1jb3A 131 1.20e+01 1jc7A b.40.3.2 62833 1nvtA 287 1.20e+01 c.2.1.7 86270 c.58.1.5 86271 1dvoA 152 1.26e+01 1dvoA a.136.1.1 19623 1v00A 242 1.27e+01 1jouB 259 1.29e+01 1ucyE 1ui0A 205 1.29e+01 c.18.1.2 -6328 1jmoH 260 1.29e+01 1ghxH 257 1.34e+01 1thpB 259 1.35e+01 5ptp 1gj5H 258 1.35e+01 1c5lH 259 1.36e+01 5ptp 1mtzA 293 1.37e+01 c.69.1.7 79467 2thfB 259 1.37e+01 1ucyE 1b7xB 259 1.37e+01 1ucyE 1rd3B 259 1.37e+01 1vr1H 261 1.38e+01 5ptp 1shhB 259 1.38e+01 1hyeA 313 1.43e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1d6wA 287 1.50e+01 1ucyE b.47.1.2 26098 1nm6A 287 1.50e+01 b.47.1.2 -4202 1eojA 289 1.51e+01 1ucyE b.47.1.2 26105 1d9iA 288 1.51e+01 1ucyE b.47.1.2 26159 1dx5M 259 1.52e+01 1ucyE 1uhsA 72 1.53e+01 1nu9A 291 1.53e+01 b.47.1.2 -4206 1dojA 295 1.53e+01 1ucyE b.47.1.2 26081 1mh0A 287 1.54e+01 b.47.1.2 79110 1ixdA 104 1.54e+01 b.34.10.1 76907 1qi4A 429 1.62e+01 1jdc b.71.1.1 27791 c.1.8.1 28778 1qydA 313 1.63e+01 c.2.1.2 -5786 1jwtA 305 1.64e+01 b.47.1.2 67398 2kinA 238 1.69e+01 1bg2 c.37.1.9 32190 1vjgA 218 1.75e+01 unknown_sccs -6447 1c9mA 269 1.84e+01 1gci c.41.1.1 32506 1nf7A 514 1.88e+01 c.1.5.1 -5218 d.37.1.1 -9616 d.37.1.1 -9617 1bcpD 110 1.92e+01 1bcpD b.40.2.1 25132 1beuA 268 1.95e+01 2tysA c.1.2.4 28574 1pkyA 470 2.03e+01 1a49A b.58.1.1 27068 c.1.12.1 29296 c.49.1.1 33150 1jr2A 286 2.07e+01 c.113.1.1 67111 1upaA 573 2.10e+01 c.31.1.3 -6745 c.36.1.5 -6903 c.36.1.9 -6943 1e0tA 470 2.19e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 1km6A 247 2.21e+01 c.1.2.3 72742 1q5pA 269 2.43e+01 c.41.1.1 -7294 1e0uA 470 2.47e+01 1a49A b.58.1.1 27072 c.1.12.1 29300 c.49.1.1 33154 1mgpA 313 2.54e+01 c.119.1.1 79098 1jdc 429 2.56e+01 1jdc b.71.1.1 27789 c.1.8.1 28776 1k8yA 268 2.57e+01 c.1.2.4 72183 1qopA 268 2.59e+01 2tysA c.1.2.4 28570 1we3O 100 2.64e+01 1kfbA 268 2.70e+01 c.1.2.4 77369 1kfcA 268 2.72e+01 c.1.2.4 77371 1jsyA 418 2.81e+01 b.1.18.11 71847 b.1.18.11 71848 1qi5A 429 2.84e+01 1jdc b.71.1.1 27792 c.1.8.1 28779 1frvA 264 2.92e+01 2frvA e.19.1.1 43308 2amg 418 2.99e+01 1jdc b.71.1.1 27796 c.1.8.1 28783 1t0qB 330 2.99e+01 1klzA 247 3.00e+01 c.1.2.3 72731 1lte 239 3.02e+01 1led b.29.1.1 24047 1krhA 338 3.06e+01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1nduA 269 3.06e+01 c.41.1.1 -7296 1v6gA 81 3.08e+01 1gcyA 527 3.11e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1uaiA 224 3.18e+01 1g66A 207 3.20e+01 1bs9 unknown_sccs 31329 1o57A 291 3.25e+01 unknown_sccs -249 c.61.1.1 -7960 1iaqA 166 3.31e+01 1ctqA c.37.1.8 62120 1p4aA 285 3.42e+01 unknown_sccs -253 c.61.1.1 -7964 1q2zA 120 3.70e+01 unknown_sccs -1646 1h2bA 359 3.75e+01 b.35.1.2 -3679 c.2.1.1 -5703 1vkmA 297 3.76e+01 1augA 215 3.77e+01 1a2zA c.56.4.1 33798 1rw2A 152 3.82e+01 unknown_sccs -1645 1wsaA 330 3.88e+01 4pgaA c.88.1.1 35558 1lf0A 166 3.99e+01 c.37.1.8 77913 1rp3A 239 4.00e+01 a.4.13.1 -326 a.4.13.2 -334 a.177.1.1 -1490