CreatePredAlphaCost pred_alpha2k alpha11 T0263.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0263.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 3 near_backbone 3 way_back 3 dry5 5 dry6.5 6 dry8 5 dry12 2 \
	phobic_fit 2 \
	sidechain 6 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

#from  T0263.t04.dssp-ehl2.constraints
HelixConstraint 	G16	N31	0.6339
HelixConstraint 	E59	N75	0.8062

StrandConstraint	L4	F9	0.6147
StrandConstraint	L37	E43	0.6113
StrandConstraint	A50	F56	0.6195
StrandConstraint	V81	D87	0.7319

# from try1-opt2.sheets
SheetConstraint T3 F11  	F56 H48  5.0	# hbond T3
SheetConstraint F36 E43  	F56 E49  5.0	# hbond L37

# added by hand
SheetConstraint T3 A10		D87 E80  5.0

# file generated by validate2rr
# based on 280 inputs
# using the /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28 network
# limited to score of .30 or greater.
# The score is an approximation of the probability
Constraint M1.CB L76.CB -10. 7.0 14.0 0.596 bonus
Constraint A2.CB L76.CB -10. 7.0 14.0 0.531 bonus
Constraint M1.CB S93.CB -10. 7.0 14.0 0.454 bonus
Constraint I30.CB L73.CB -10. 7.0 14.0 0.424 bonus
Constraint Q6.CB A50.CB -10. 7.0 14.0 0.347 bonus
Constraint T42.CB H69.CB -10. 7.0 14.0 0.329 bonus