CreatePredAlphaCost pred_alpha2k alpha11 T0263.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0263.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 10 near_backbone 5 way_back 5 dry5 10 dry6.5 20 dry8 15 dry12 10 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

#from  T0263.t04.dssp-ehl2.constraints
HelixConstraint 	G16	N31	0.6339
HelixConstraint 	E59	N75	0.8062

StrandConstraint	L4	F9	0.6147
StrandConstraint	L37	E43	0.6113
StrandConstraint	A50	F56	0.6195
StrandConstraint	V81	D87	0.7319


# from try8-opt2.sheets -- long sheets need big weights
SheetConstraint A2 F11	T57 H48	hbond T3	15
SheetConstraint T3 F9	N89 A83	hbond L4	15
SheetConstraint H8 N12	A83 E79	hbond A10	15
SheetConstraint G35 E43	T57 E49	hbond L37	15

# make a hairpin at C-terminus to bond to other monomer
SheetConstraint P91 Q94  A101 A98  hbond A98	12
 
# 101,100,99,98,97,96,95(try9s locations) -> 91,92,93,94,98,99,100(this try locations)
Constraint P91.CA T3.CA 	   10.147  12.147  14.147	1.8
Constraint P91.CA H8.CA 	   20.391  22.391  24.391	1.8
Constraint P91.CA F56.CA	   14.209  16.209  18.209	1.8
Constraint P91.CA F36.CA	   16.967  18.967  20.967	1.8
Constraint P91.CA E67.CA	   27.315  29.315  31.315	1.8
				                 
Constraint L92.CA T3.CA 	    8.470  10.470  12.470	1.8
Constraint L92.CA H8.CA 	   17.108  19.108  21.108	1.8
Constraint L92.CA F56.CA	   12.136  14.136  16.136	1.8
Constraint L92.CA F36.CA	   14.613  16.613  18.613	1.8
Constraint L92.CA E67.CA	   25.337  27.337  29.337	1.8
				                 
Constraint S93.CA T3.CA 	   10.798  12.798  14.798	1.8
Constraint S93.CA H8.CA 	   17.655  19.655  21.655	1.8
Constraint S93.CA F56.CA	   13.533  15.533  17.533	1.8
Constraint S93.CA F36.CA	   14.907  16.907  18.907	1.8
Constraint S93.CA E67.CA	   27.169  29.169  31.169	1.8
				                 
Constraint Q94.CA T3.CA 	   10.544  12.544  14.544	1.8
Constraint Q94.CA H8.CA 	   15.394  17.394  19.394	1.8
Constraint Q94.CA F56.CA	   12.278  14.278  16.278	1.8
Constraint Q94.CA F36.CA	   12.915  14.915  16.915	1.8
Constraint Q94.CA E67.CA	   25.573  27.573  29.573	1.8
				                 
Constraint A98.CA T3.CA 	    6.886   8.886  10.886	1.8
Constraint A98.CA H8.CA 	   14.450  16.450  18.450	1.8
Constraint A98.CA F56.CA	    8.534  10.534  12.534	1.8
Constraint A98.CA F36.CA	    9.651  11.651  13.651	1.8
Constraint A98.CA E67.CA	   22.131  24.131  26.131	1.8
				                 
Constraint K99.CA T3.CA 	    7.793   9.793  11.793	1.8
Constraint K99.CA H8.CA 	   18.174  20.174  22.174	1.8
Constraint K99.CA F56.CA	    9.548  11.548  13.548	1.8
Constraint K99.CA F36.CA	   10.342  12.342  14.342	1.8
Constraint K99.CA E67.CA	   23.940  25.940  27.940	1.8
				                 
Constraint L100.CA T3.CA 	    8.719  10.719  12.719	1.8
Constraint L100.CA H8.CA 	   20.758  22.758  24.758	1.8
Constraint L100.CA F56.CA	   11.378  13.378  15.378	1.8
Constraint L100.CA F36.CA	   12.861  14.861  16.861	1.8
Constraint L100.CA E67.CA	   25.680  27.680  29.680	1.8