# List of top-scoring protein chains for T0263.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f2fA 104 1.00e+00 1fmk d.93.1.1 40455 1iw0A 215 1.45e+00 a.132.1.1 83720 1iujA 106 1.72e+00 unknown_sccs -9953 1jae 471 1.97e+00 1smd b.71.1.1 27773 c.1.8.1 28760 1viwA 471 2.00e+00 1smd b.71.1.1 27776 c.1.8.1 28763 1lq9A 112 2.36e+00 d.58.4.3 78129 1de8A 276 3.11e+00 1bix d.151.1.1 41788 1dewA 279 3.12e+00 1bix d.151.1.1 41786 1bix 287 3.15e+00 1bix d.151.1.1 41781 1hd7A 318 3.27e+00 1bix d.151.1.1 41780 1rvfL 110 4.07e+00 8fabA b.1.1.1 19990 1lvmA 229 4.75e+00 b.47.1.3 78243 1g60A 260 4.80e+00 c.66.1.11 70151 1cvjA 190 4.83e+00 1cvjB d.58.7.1 39191 d.58.7.1 39192 1lvbA 243 4.91e+00 b.47.1.3 78234 1e44B 96 5.13e+00 1e44B b.101.1.1 59220 1jllB 388 5.36e+00 c.23.4.1 66853 d.142.1.4 66854 2scuB 388 5.37e+00 2scuB c.23.4.1 31141 d.142.1.4 41562 1cqjB 385 5.37e+00 2scuB c.23.4.1 31143 d.142.1.4 41564 1o4rA 108 5.94e+00 d.93.1.1 -10624 1shdA 107 6.27e+00 1fmk d.93.1.1 40440 1a1aA 107 6.35e+00 1fmk d.93.1.1 40449 1bkm 113 6.49e+00 1fmk d.93.1.1 40426 1skj 113 6.52e+00 1fmk d.93.1.1 40427 1bkl 113 6.54e+00 1fmk d.93.1.1 40428 1is0A 106 6.72e+00 d.93.1.1 66299 1nzlA 103 6.76e+00 d.93.1.1 86453 1p13A 102 6.89e+00 d.93.1.1 -10625 1shaA 104 6.90e+00 1fmk d.93.1.1 40424 1pkqA 241 7.20e+00 b.1.1.1 88148 b.1.1.2 88149 1pskL 213 8.54e+00 8fabA b.1.1.1 20138 b.1.1.2 21168 1gpwA 253 9.68e+00 c.1.2.1 65460 1thfD 253 9.76e+00 1thfD c.1.2.1 28535 1vh7A 265 1.00e+01 c.1.2.1 -5159 1nmeB 92 1.03e+01 1gfwB 97 1.04e+01 1pauB 1i9wA 390 1.04e+01 b.1.18.4 71163 f.10.1.1 71164 1rerA 391 1.04e+01 b.1.18.4 -2740 f.10.1.1 -12385 1rhkB 102 1.06e+01 1rhjB 110 1.09e+01 1c91A 265 1.15e+01 2ebn c.1.8.5 29000 1c92A 265 1.15e+01 2ebn c.1.8.5 29001 1c90A 265 1.15e+01 2ebn c.1.8.5 28996 1khcA 147 1.16e+01 b.34.9.2 68608 1edt 271 1.16e+01 2ebn c.1.8.5 28993 1wjeA 46 1.16e+01 1wjcA a.4.10.1 16263 1n64P 16 1.17e+01 1c8xA 265 1.17e+01 2ebn c.1.8.5 28994 1iybA 208 1.24e+01 d.124.1.1 -10977 1c93A 265 1.25e+01 2ebn c.1.8.5 28998 1c3fA 265 1.26e+01 2ebn c.1.8.5 28999 1wjfA 55 1.28e+01 1wjcA a.4.10.1 16267 1vjtA 483 1.28e+01 c.2.1.5 -5941 d.162.1.2 -11508 1forL 210 1.29e+01 8fabA b.1.1.1 19988 b.1.1.2 21044 1orsA 214 1.30e+01 b.1.1.1 87349 b.1.1.2 87350 1ifi 50 1.30e+01 1ifi h.1.4.1 45551 1cwxA 44 1.30e+01 1cwxA j.54.1.1 46338 1c8yA 265 1.34e+01 2ebn c.1.8.5 28995 2cpb 50 1.35e+01 2cpb h.1.4.1 45568 1qokA 282 1.38e+01 1f3rB b.1.1.1 20493 b.1.1.1 20492 1cf8L 215 1.41e+01 8fabA b.1.1.1 20378 b.1.1.2 21370 1who 96 1.46e+01 1who b.7.3.1 23215 1jjoC 261 1.60e+01 1v7mL 213 1.68e+01 b.1.1.1 -2116 b.1.1.2 -2390 1mjfA 281 1.70e+01 c.66.1.17 79198 1bx0A 314 1.74e+01 1fnc b.43.4.2 25630 c.25.1.1 31520 1frn 314 1.74e+01 1fnc b.43.4.2 25631 c.25.1.1 31521 1frqA 314 1.75e+01 1fnc b.43.4.2 25632 c.25.1.1 31522 1bx1A 314 1.76e+01 1fnc b.43.4.2 25629 c.25.1.1 31519 35c8L 212 1.78e+01 8fabA b.1.1.1 20296 b.1.1.2 21288 15c8L 213 1.78e+01 8fabA b.1.1.1 20300 b.1.1.2 21292 1pnuL 114 1.78e+01 i.1.1.1 88209 1kenL 213 1.79e+01 b.1.1.1 72381 b.1.1.2 72382 1nkwL 116 1.80e+01 i.1.1.2 80597 1miuA 738 1.80e+01 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1mimL 210 1.81e+01 8fabA b.1.1.1 20128 b.1.1.2 21158 1mjeA 649 1.81e+01 a.170.1.1 79193 a.171.1.1 79194 b.40.4.3 79195 b.40.4.3 79196 b.40.4.3 79197 1v03A 565 1.93e+01 1ihuA 589 2.03e+01 c.37.1.10 62394 c.37.1.10 62395 1fnd 314 2.12e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 2fb4L 216 2.33e+01 8fabA b.1.1.1 19846 b.1.1.2 20950 1nmsA 249 2.37e+01 c.17.1.1 85879 1p1oA 263 2.39e+01 c.94.1.1 87699 1qx3A 257 2.40e+01 c.17.1.1 -7914 1p1wA 263 2.41e+01 c.94.1.1 87713 1ku9A 152 2.48e+01 a.4.5.36 77544 1m5dA 263 2.53e+01 c.94.1.1 78641 1mqdA 261 2.58e+01 c.94.1.1 85049 1mqiA 263 2.59e+01 c.94.1.1 -8681 1lbcA 263 2.59e+01 c.94.1.1 73805 1j32A 388 2.60e+01 c.67.1.1 77067 1lbbA 263 2.61e+01 c.94.1.1 73804 1lb8A 263 2.62e+01 c.94.1.1 73800 1ftkA 279 2.63e+01 1gr2A c.94.1.1 35819 1eceA 358 2.68e+01 1eceA c.1.8.3 28813 1bkjA 240 2.69e+01 1bkjA d.90.1.1 40243 1mqhA 263 2.70e+01 c.94.1.1 -8680 1wjaA 47 2.94e+01 1wjcA a.4.10.1 16259 1v02A 565 2.98e+01 1cp3A 277 3.01e+01 1pauA c.17.1.1 30992 1i7hA 111 3.03e+01 d.15.4.1 71122 1jchA 551 3.08e+01 b.101.1.1 66491 b.110.1.1 66492 h.4.9.1 66493 1eokA 290 3.12e+01 1eokA c.1.8.5 28991 1jmtA 104 3.14e+01 d.58.7.3 63180 1v02E 565 3.15e+01 1wjbA 55 3.25e+01 1wjcA a.4.10.1 16265 1bc5A 269 3.41e+01 1af7 a.58.1.1 17929 c.66.1.8 34204 1af7 274 3.45e+01 1af7 a.58.1.1 17928 c.66.1.8 34203 1s1i9 91 3.45e+01 1ob1A 215 3.60e+01 b.1.1.1 86748 b.1.1.2 86749 1movA 219 3.62e+01 d.22.1.1 85038 1p4tA 155 3.73e+01 f.4.1.1 87779 1i51B 105 3.74e+01 1nktA 922 3.81e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1uf2C 421 3.98e+01 unknown_sccs -1522 b.19.1.1 -3155