# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lq9A 112 1.07e-04 d.58.4.3 78129 1iujA 106 1.24e-03 unknown_sccs -9953 1q53A 112 1.21e-02 d.58.4.4 -9944 1q8bA 105 1.79e-02 unknown_sccs -9958 1j27A 102 3.87e-02 unknown_sccs -10116 1q4rA 112 6.04e-02 d.58.4.4 -9943 1qysA 106 7.12e-02 unknown_sccs -13432 1fjcA 96 7.74e-02 1fjcA d.58.7.1 39212 1cvjA 190 1.52e-01 1cvjB d.58.7.1 39191 d.58.7.1 39192 1edt 271 2.15e-01 2ebn c.1.8.5 28993 1j0wA 103 3.05e-01 b.55.1.2 -4364 1j5yA 187 3.47e-01 a.4.5.1 71592 d.94.2.1 71593 1cnt1 187 3.99e-01 1cnt3 1f4kA 122 5.85e-01 1bm9A a.4.5.7 59646 1jmtA 104 6.00e-01 d.58.7.3 63180 1bm9A 122 6.45e-01 1bm9A a.4.5.7 16116 1g01A 364 8.27e-01 7a3hA c.1.8.3 60161 1g0cA 364 8.53e-01 7a3hA c.1.8.3 60165 1dtdA 303 8.78e-01 1aye c.56.5.1 33823 1qb0A 211 1.01e+00 1c25 c.46.1.1 32699 1aye 401 1.30e+00 1aye c.56.5.1 33824 d.58.3.1 39065 1cnt3 187 1.31e+00 1cnt3 1v84A 253 1.42e+00 1fjeB 175 1.54e+00 1fj7A d.58.7.1 39210 d.58.7.1 39211 1shdA 107 1.55e+00 1fmk d.93.1.1 40440 1g7eA 122 1.97e+00 1g7eA c.47.1.7 33055 1f2fA 104 2.53e+00 1fmk d.93.1.1 40455 1o4rA 108 2.58e+00 d.93.1.1 -10624 1g19A 350 2.60e+00 2reb c.37.1.11 32284 d.48.1.1 38770 1c25 161 3.28e+00 1c25 c.46.1.1 32698 1a4iA 301 3.46e+00 1a4iA c.2.1.7 30278 c.58.1.2 33926 1h2vZ 156 3.46e+00 d.58.7.1 76595 1shaA 104 3.64e+00 1fmk d.93.1.1 40424 1a4iB 301 3.77e+00 1a4iA c.2.1.7 30279 c.58.1.2 33927 1diaA 306 3.92e+00 1a4iA c.2.1.7 30280 c.58.1.2 33928 2jhbA 143 4.26e+00 2jhbA b.54.1.1 26950 1b7fA 168 4.53e+00 1b7fA d.58.7.1 39169 d.58.7.1 39170 1o0uA 429 4.77e+00 c.118.1.1 80743 1gr2A 279 4.90e+00 1gr2A c.94.1.1 35825 1h9dB 134 5.12e+00 2jhbA b.54.1.1 60822 1ftkA 279 5.53e+00 1gr2A c.94.1.1 35819 1e50B 134 5.58e+00 2jhbA b.54.1.1 59245 1e44B 96 5.84e+00 1e44B b.101.1.1 59220 1cx0A 95 5.90e+00 1urnA d.58.7.1 39158 1bc5A 269 6.01e+00 1af7 a.58.1.1 17929 c.66.1.8 34204 1umhA 184 6.63e+00 unknown_sccs -3127 1ubeA 349 6.90e+00 c.37.1.11 88412 d.48.1.1 88413 1af7 274 7.17e+00 1af7 a.58.1.1 17928 c.66.1.8 34203 1ovnA 248 7.28e+00 a.71.1.1 -1096 c.47.1.7 -7477 1mqiA 263 7.47e+00 c.94.1.1 -8681 1mqdA 261 7.65e+00 c.94.1.1 85049 1m5dA 263 7.69e+00 c.94.1.1 78641 1n13B 113 8.00e+00 1bix 287 8.11e+00 1bix d.151.1.1 41781 1bag 425 8.15e+00 1bag b.71.1.1 27720 c.1.8.1 28707 1urnA 97 8.42e+00 1urnA d.58.7.1 39153 1vkbA 161 8.91e+00 1r8hA 87 9.08e+00 d.58.8.1 -10041 1g60A 260 9.21e+00 c.66.1.11 70151 1kmmA 424 9.24e+00 1adjA c.51.1.1 33174 d.104.1.1 40723 1ha1 184 9.25e+00 1ha1 d.58.7.1 39147 d.58.7.1 39148 1a99A 344 9.97e+00 1pot c.94.1.1 35812 1mwqA 101 1.01e+01 unknown_sccs -9962 1fxlA 167 1.02e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1shbA 104 1.04e+01 1fmk d.93.1.1 40425 1cbg 490 1.07e+01 1e70M c.1.8.4 28933 1m5eA 263 1.11e+01 c.94.1.1 78642 1l3kA 196 1.12e+01 d.58.7.1 73539 d.58.7.1 73540 1cnt2 187 1.12e+01 1cnt3 1fi4A 416 1.19e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1m5oC 100 1.25e+01 d.58.7.1 78654 1hvyA 288 1.26e+01 1bkpA d.117.1.1 41049 1luzA 88 1.34e+01 b.40.4.5 74271 1mml 265 1.38e+01 1mml e.8.1.2 43015 1bjx 110 1.48e+01 1bjx c.47.1.2 32774 2bjxA 110 1.48e+01 1bjx c.47.1.2 32776 1o0pA 104 1.57e+01 d.58.7.1 86535 1uedA 406 1.73e+01 a.104.1.1 -1459 1jjoC 261 1.73e+01 1cvjB 190 1.78e+01 1cvjB d.58.7.1 39193 d.58.7.1 39194 1ub1A 133 1.78e+01 d.10.1.3 -8969 1jclA 260 1.84e+01 c.1.10.1 66501 1fgyA 127 1.85e+01 1faoA b.55.1.1 26976 1qk9A 92 1.86e+01 1qk9A d.10.1.3 37485 1s2dA 167 1.88e+01 c.23.14.1 -6469 1mwpA 96 1.88e+01 1mwpA d.170.2.1 42453 1g7vA 284 1.96e+01 1d9eA c.1.10.4 60335 1p1xA 260 1.97e+01 1jae 471 2.06e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1v02A 565 2.06e+01 1v6fA 151 2.09e+01 2u1a 88 2.11e+01 2u1a d.58.7.1 39164 1k28A 584 2.14e+01 b.40.8.1 68049 b.108.1.2 68050 d.2.1.3 68051 1iibA 106 2.17e+01 1iibA c.44.2.1 32648 1eceA 358 2.22e+01 1eceA c.1.8.3 28813 1hg3A 225 2.27e+01 1hg3A c.1.1.1 61025 1b3tA 147 2.31e+01 1b3tA d.58.8.1 39228 1jwqA 179 2.33e+01 unknown_sccs -7897 1vjtA 483 2.33e+01 c.2.1.5 -5941 d.162.1.2 -11508 1h5vA 304 2.33e+01 c.1.8.3 70898 7a3hA 303 2.34e+01 7a3hA c.1.8.3 28817 1jchA 551 2.36e+01 b.101.1.1 66491 b.110.1.1 66492 h.4.9.1 66493 1jchC 551 2.36e+01 b.101.1.1 66495 b.110.1.1 66496 h.4.9.1 66497 1lvmA 229 2.38e+01 b.47.1.3 78243 1bhgA 613 2.40e+01 1bhgA b.1.4.1 22161 b.18.1.5 23766 c.1.8.3 28889 1btkB 169 2.51e+01 1btkA b.55.1.1 26960 1k3eA 156 2.52e+01 d.198.1.1 68103 1vgvA 384 2.64e+01 c.87.1.3 -8575 1c4kA 730 2.65e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1egzA 291 2.72e+01 7a3hA c.1.8.3 28828 1n0wA 243 2.73e+01 c.37.1.11 79772 1f6dA 376 2.80e+01 1f6dA c.87.1.3 35467 1d5rA 324 2.86e+01 1d5rA b.7.1.1 23181 c.45.1.1 32697 1vjzA 341 2.92e+01 c.1.8.3 -5318 1ekeA 230 2.92e+01 1ekeA c.55.3.1 33572 1vhiA 142 2.93e+01 1b3tA d.58.8.1 39230 1qb4A 883 3.03e+01 c.1.12.3 74640 1cot 129 3.11e+01 1ycc a.3.1.1 15899 1oiaA 95 3.15e+01 d.58.7.1 87051 1qfxA 460 3.23e+01 1qfxA c.60.1.2 33994 1fiy 883 3.26e+01 1fiy c.1.12.3 29307 1a3h 300 3.27e+01 7a3hA c.1.8.3 28819 1isaA 192 3.53e+01 1avmA a.2.11.1 15731 d.44.1.1 38724 1urrA 102 3.57e+01 1oef 24 3.63e+01 j.39.1.1 46299 119l 164 3.65e+01 1l92 d.2.1.3 36622 1l92 164 3.68e+01 1l92 d.2.1.3 36629 1btkA 169 3.70e+01 1btkA b.55.1.1 26959 1forL 210 3.73e+01 8fabA b.1.1.1 19988 b.1.1.2 21044 1iscA 192 3.77e+01 1avmA a.2.11.1 15733 d.44.1.1 38726 1colA 204 3.78e+01 1a87 f.1.1.1 43378 3c2c 112 3.82e+01 1ycc a.3.1.1 15885 1js3A 486 3.84e+01 c.67.1.6 67215 1l58 164 3.86e+01 1l92 d.2.1.3 36635 1whsA 255 3.86e+01 1ivyA c.69.1.5 34649 1d2kA 392 3.90e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1yprA 125 3.91e+01 3nul d.110.1.1 40888 1bcsA 263 3.94e+01 1ivyA c.69.1.5 34647 1ro0A 216 3.95e+01 unknown_sccs -11390 1bvyF 191 3.99e+01 1bvyF c.23.5.1 31207