# List of top-scoring protein chains for t2k-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iujA 106 3.51e-03 unknown_sccs -9953 1edt 271 6.87e-03 2ebn c.1.8.5 28993 1lq9A 112 9.02e-03 d.58.4.3 78129 1cvjA 190 1.54e-02 1cvjB d.58.7.1 39191 d.58.7.1 39192 1qysA 106 2.56e-02 unknown_sccs -13432 1iw0A 215 3.35e-02 a.132.1.1 83720 2scuB 388 5.10e-02 2scuB c.23.4.1 31141 d.142.1.4 41562 1fjcA 96 1.52e-01 1fjcA d.58.7.1 39212 1g7vA 284 4.01e-01 1d9eA c.1.10.4 60335 1fjeB 175 4.54e-01 1fj7A d.58.7.1 39210 d.58.7.1 39211 1bix 287 4.90e-01 1bix d.151.1.1 41781 1q8bA 105 5.38e-01 unknown_sccs -9958 1d9eA 284 5.96e-01 1d9eA c.1.10.4 29195 1vjtA 483 7.51e-01 c.2.1.5 -5941 d.162.1.2 -11508 1jmtA 104 1.32e+00 d.58.7.3 63180 1cnt3 187 1.39e+00 1cnt3 1o60A 292 1.52e+00 c.1.10.4 -5549 1cvjB 190 1.89e+00 1cvjB d.58.7.1 39193 d.58.7.1 39194 1ivnA 190 2.35e+00 c.23.10.5 83719 1yprA 125 2.36e+00 3nul d.110.1.1 40888 1esiA 262 3.27e+00 1skf e.3.1.1 42682 1skf 262 3.61e+00 1skf e.3.1.1 42684 1g7eA 122 3.82e+00 1g7eA c.47.1.7 33055 2igd 61 3.84e+00 2igd d.15.7.1 37821 1igd 61 3.90e+00 2igd d.15.7.1 37822 1egzA 291 3.97e+00 7a3hA c.1.8.3 28828 1urnA 97 4.24e+00 1urnA d.58.7.1 39153 1es4A 262 4.78e+00 1skf e.3.1.1 42683 1e44B 96 4.87e+00 1e44B b.101.1.1 59220 1ckeA 227 4.91e+00 1ckeA c.37.1.1 31846 1kqqA 139 5.12e+00 a.4.3.1 72885 1k9dA 679 5.24e+00 c.1.8.10 77292 d.92.2.2 77293 1es5A 262 5.28e+00 1skf e.3.1.1 42679 1i2kA 269 5.48e+00 e.17.1.1 -11995 1colA 204 6.06e+00 1a87 f.1.1.1 43378 1mb4A 370 6.95e+00 c.2.1.3 78908 d.81.1.1 78909 1fseA 74 7.29e+00 1fseA a.4.6.2 60000 1fht 116 7.63e+00 1urnA d.58.7.1 39157 1et0A 269 7.76e+00 1et0A e.17.1.1 43289 1pgx 83 7.85e+00 2igd d.15.7.1 37823 1es2A 262 7.86e+00 1skf e.3.1.1 42680 1tvlA 454 7.97e+00 1bm9A 122 8.02e+00 1bm9A a.4.5.7 16116 1q1lA 401 8.28e+00 unknown_sccs -11166 1a99A 344 8.30e+00 1pot c.94.1.1 35812 1vhsA 175 8.67e+00 d.108.1.1 -10794 1cx0A 95 8.88e+00 1urnA d.58.7.1 39158 1bh9B 89 9.29e+00 1bh9B a.22.1.3 16485 1nkl 78 9.38e+00 1nkl a.64.1.1 18140 1f0lA 535 9.45e+00 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1cnt1 187 9.45e+00 1cnt3 1a8y 367 9.72e+00 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1oiaA 95 9.83e+00 d.58.7.1 87051 1f4kA 122 9.94e+00 1bm9A a.4.5.7 59646 1r1mA 164 1.05e+01 unknown_sccs -10431 1on0A 158 1.10e+01 d.108.1.1 87095 3sxlA 184 1.11e+01 1b7fA d.58.7.1 39173 d.58.7.1 39174 1ash 150 1.13e+01 1ash a.1.1.2 15622 1f2fA 104 1.14e+01 1fmk d.93.1.1 40455 1s72P 149 1.14e+01 1jj2O 148 1.15e+01 1ffkM a.94.1.1 63100 1lvmA 229 1.20e+01 b.47.1.3 78243 1l8nA 679 1.21e+01 c.1.8.10 84564 d.92.2.2 84565 1q8rA 120 1.24e+01 unknown_sccs -10422 1e5rA 290 1.24e+01 1e5rA b.82.2.4 59276 1qq8A 214 1.25e+01 1qq8A 1iweA 457 1.30e+01 c.37.1.10 71486 1v38A 78 1.31e+01 a.60.1.2 -1016 1f8rA 498 1.32e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974 1cnt2 187 1.32e+01 1cnt3 1fp3A 402 1.38e+01 1fp3A a.102.1.3 18842 1nu0A 138 1.40e+01 unknown_sccs -7658 1m5oC 100 1.41e+01 d.58.7.1 78654 1gvdA 52 1.42e+01 a.4.1.3 83338 1q7zA 566 1.42e+01 c.1.21.2 -5638 c.1.26.1 -5666 1ibvB 229 1.53e+01 1nar 290 1.58e+01 1nar c.1.8.5 28988 2cmkA 227 1.60e+01 1ckeA c.37.1.1 31847 1n81A 186 1.61e+01 a.185.1.1 85388 1ehiA 377 1.64e+01 1iow c.30.1.2 31716 d.142.1.1 41484 1kdoA 227 1.71e+01 c.37.1.1 68478 1m55A 197 1.73e+01 d.89.1.3 74469 1g60A 260 1.76e+01 c.66.1.11 70151 1nijA 318 1.78e+01 c.37.1.10 85741 d.237.1.1 85742 1ddt 535 1.85e+01 1ddt b.2.1.1 22379 d.166.1.1 42241 f.1.2.1 43384 1g01A 364 1.86e+01 7a3hA c.1.8.3 60161 1nu4A 97 1.90e+01 d.58.7.1 80731 1ffkM 148 1.90e+01 1ffkM a.94.1.1 18740 1fbtA 190 1.91e+01 1bif c.60.1.4 34004 1ndbA 596 1.91e+01 c.43.1.3 80411 c.43.1.3 80412 1dssG 333 1.91e+01 1dssG c.2.1.3 30022 d.81.1.1 39937 1khcA 147 1.91e+01 b.34.9.2 68608 1hy5A 136 1.93e+01 a.24.11.1 65955 1who 96 1.97e+01 1who b.7.3.1 23215 1itf 165 1.99e+01 1b5l a.26.1.3 16899 1usmA 80 2.03e+01 d.74.1.1 -10334 1thfD 253 2.03e+01 1thfD c.1.2.1 28535 1di0A 158 2.08e+01 1di0A c.16.1.1 30957 3dfr 162 2.09e+01 3dfr c.71.1.1 34880 1chuA 540 2.10e+01 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1nf1A 333 2.15e+01 1nf1A a.116.1.2 19110 1mwqA 101 2.16e+01 unknown_sccs -9962 1n45A 233 2.22e+01 a.132.1.1 79981 1g0cA 364 2.23e+01 7a3hA c.1.8.3 60165 1nznA 126 2.25e+01 a.118.8.1 -1616 1df3A 162 2.31e+01 1mup b.60.1.1 27134 1vkbA 161 2.37e+01 1ufhA 180 2.40e+01 d.108.1.1 88485 1cwxA 44 2.45e+01 1cwxA j.54.1.1 46338 2gd1O 334 2.46e+01 1dssG c.2.1.3 29978 d.81.1.1 39893 1qb0A 211 2.62e+01 1c25 c.46.1.1 32699 1atiB 505 2.63e+01 1atiA c.51.1.1 33197 d.104.1.1 40746 1dtdA 303 2.63e+01 1aye c.56.5.1 33823 2pviA 157 2.73e+01 3pviA c.52.1.6 33302 1crwG 333 2.76e+01 1dssG c.2.1.3 30026 d.81.1.1 39941 1qy1A 174 2.83e+01 b.60.1.1 -4445 1iy8A 267 2.83e+01 c.2.1.2 83774 1jjoC 261 2.89e+01 1atiA 505 2.98e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1a4iA 301 3.03e+01 1a4iA c.2.1.7 30278 c.58.1.2 33926 1io2A 213 3.11e+01 1ekeA c.55.3.1 62612 1spuB 727 3.15e+01 1oacA b.30.2.1 24399 d.17.2.1 38025 d.17.2.1 38026 d.82.1.1 40012 4crxA 322 3.22e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1diaA 306 3.24e+01 1a4iA c.2.1.7 30280 c.58.1.2 33928 1jv4A 162 3.33e+01 b.60.1.1 67343 1qg3A 195 3.34e+01 1qg3A b.1.2.1 21993 b.1.2.1 21994 1reoA 486 3.48e+01 c.3.1.2 -5997 d.16.1.5 -9217 1gqiA 708 3.49e+01 c.1.8.10 76279 d.92.2.2 76280 1eceA 358 3.51e+01 1eceA c.1.8.3 28813 1gg1A 350 3.52e+01 1qr7A c.1.10.4 29187 1ekeA 230 3.59e+01 1ekeA c.55.3.1 33572 1gd1O 334 3.67e+01 1dssG c.2.1.3 29962 d.81.1.1 39877 1cem 363 3.67e+01 1cem a.102.1.2 18826 1b5tA 275 3.77e+01 1b5tA c.1.23.1 29676 1jdlA 121 3.78e+01 a.3.1.1 66557 1pyaB 228 3.92e+01 1pyaB 1fxlA 167 3.96e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1bam 213 3.97e+01 1bam c.52.1.3 33285 1glv 303 3.99e+01 1gsa c.30.1.3 31721 d.142.1.1 41480 1kbuA 349 3.99e+01 a.60.9.1 72284 d.163.1.1 72285