# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iujA 106 2.56e-02 unknown_sccs -9953 1cvjA 190 3.23e-02 1cvjB d.58.7.1 39191 d.58.7.1 39192 1lq9A 112 4.27e-02 d.58.4.3 78129 1iw0A 215 1.37e-01 a.132.1.1 83720 1fjeB 175 1.45e-01 1fj7A d.58.7.1 39210 d.58.7.1 39211 1fjcA 96 1.52e-01 1fjcA d.58.7.1 39212 2scuB 388 2.80e-01 2scuB c.23.4.1 31141 d.142.1.4 41562 1bix 287 3.32e-01 1bix d.151.1.1 41781 1f2fA 104 4.57e-01 1fmk d.93.1.1 40455 1e44B 96 1.78e+00 1e44B b.101.1.1 59220 1q8bA 105 2.45e+00 unknown_sccs -9958 1g7eA 122 2.59e+00 1g7eA c.47.1.7 33055 1qysA 106 2.63e+00 unknown_sccs -13432 2fhi 147 3.08e+00 1fit d.13.1.1 37505 1shbA 104 3.58e+00 1fmk d.93.1.1 40425 1shaA 104 3.72e+00 1fmk d.93.1.1 40424 1cvjB 190 3.79e+00 1cvjB d.58.7.1 39193 d.58.7.1 39194 1g60A 260 3.82e+00 c.66.1.11 70151 1lvmA 229 4.00e+00 b.47.1.3 78243 1q4rA 112 4.66e+00 d.58.4.4 -9943 1cnt1 187 4.85e+00 1cnt3 1shdA 107 5.08e+00 1fmk d.93.1.1 40440 1pauB 102 5.27e+00 1pauB 1jchC 551 5.83e+00 b.101.1.1 66495 b.110.1.1 66496 h.4.9.1 66497 1jchA 551 5.84e+00 b.101.1.1 66491 b.110.1.1 66492 h.4.9.1 66493 1edt 271 6.48e+00 2ebn c.1.8.5 28993 1vkbA 161 7.25e+00 1bjx 110 7.46e+00 1bjx c.47.1.2 32774 2bjxA 110 7.46e+00 1bjx c.47.1.2 32776 1vjtA 483 7.50e+00 c.2.1.5 -5941 d.162.1.2 -11508 1cnt3 187 7.52e+00 1cnt3 1nu0A 138 7.63e+00 unknown_sccs -7658 1bm9A 122 8.27e+00 1bm9A a.4.5.7 16116 1d5yA 292 9.04e+00 1d5yA a.4.1.8 16055 a.4.1.8 16056 d.60.1.2 39532 1nmeB 92 9.70e+00 1o4rA 108 9.93e+00 d.93.1.1 -10624 1kqqA 139 1.11e+01 a.4.3.1 72885 1nf1A 333 1.22e+01 1nf1A a.116.1.2 19110 1qg3A 195 1.27e+01 1qg3A b.1.2.1 21993 b.1.2.1 21994 1f4kA 122 1.34e+01 1bm9A a.4.5.7 59646 1jmtA 104 1.50e+01 d.58.7.3 63180 1bkjA 240 1.52e+01 1bkjA d.90.1.1 40243 1cwxA 44 1.62e+01 1cwxA j.54.1.1 46338 1k4zA 159 1.66e+01 b.80.5.1 72070 1who 96 1.69e+01 1who b.7.3.1 23215 1v7oA 165 1.75e+01 unknown_sccs -10249 1ckeA 227 1.77e+01 1ckeA c.37.1.1 31846 1jj2O 148 1.97e+01 1ffkM a.94.1.1 63100 1s72P 149 1.98e+01 1nkl 78 2.01e+01 1nkl a.64.1.1 18140 1jjoC 261 2.09e+01 1uf2C 421 2.11e+01 unknown_sccs -1522 b.19.1.1 -3155 1fseA 74 2.13e+01 1fseA a.4.6.2 60000 1wjbA 55 2.17e+01 1wjcA a.4.10.1 16265 1p4tA 155 2.21e+01 f.4.1.1 87779 1qq8A 214 2.36e+01 1qq8A 1ovqA 138 2.38e+01 unknown_sccs -7660 1a8h 500 2.46e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1a99A 344 2.53e+01 1pot c.94.1.1 35812 1n45A 233 2.72e+01 a.132.1.1 79981 1fxlA 167 2.73e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 2cmkA 227 2.74e+01 1ckeA c.37.1.1 31847 1bmw 96 2.75e+01 1who b.7.3.1 23217 1a4iB 301 2.84e+01 1a4iA c.2.1.7 30279 c.58.1.2 33927 1wjcA 47 2.85e+01 1wjcA a.4.10.1 16261 1m5oC 100 2.94e+01 d.58.7.1 78654 1mb4A 370 2.94e+01 c.2.1.3 78908 d.81.1.1 78909 1khcA 147 2.97e+01 b.34.9.2 68608 1pk6B 132 2.97e+01 b.22.1.1 -3290 1kq5A 159 2.98e+01 b.80.5.1 68795 1m5yA 408 3.02e+01 a.167.1.1 78664 d.26.1.1 78665 d.26.1.1 78666 1g1eB 89 3.04e+01 1g1eB a.59.1.1 17931 1a4iA 301 3.09e+01 1a4iA c.2.1.7 30278 c.58.1.2 33926 1cnt2 187 3.19e+01 1cnt3 1cxvA 164 3.24e+01 1ck7A d.92.1.11 40404 1fit 147 3.47e+01 1fit d.13.1.1 37499 1ash 150 3.52e+01 1ash a.1.1.2 15622 1gyfA 62 3.73e+01 1gyfA d.76.1.1 39749 1qaeA 245 3.86e+01 1qaeA d.4.1.2 37141 1jhb 106 3.90e+01 1kte c.47.1.1 32772 3sdhA 146 3.96e+01 3sdhA a.1.1.2 14984 1urnA 97 3.97e+01 1urnA d.58.7.1 39153 1eokA 290 3.99e+01 1eokA c.1.8.5 28991