# TARGET T0263 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0263.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 14.1225 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.038 0.006 0.009 0.010 0.131 0.805 2 A 0.149 0.005 0.017 0.010 0.201 0.618 3 T 0.377 0.010 0.015 0.006 0.160 0.431 4 L 0.867 0.008 0.007 0.004 0.034 0.080 5 L 0.963 0.001 0.001 0.003 0.011 0.021 6 Q 0.979 0.001 0.001 0.002 0.005 0.012 7 L 0.944 0.002 0.001 0.008 0.010 0.036 8 H 0.871 0.002 0.001 0.008 0.025 0.093 9 F 0.755 0.011 0.003 0.006 0.054 0.171 10 A 0.503 0.026 0.009 0.009 0.252 0.202 11 F 0.210 0.019 0.012 0.019 0.493 0.246 12 N 0.053 0.010 0.011 0.018 0.621 0.288 13 G 0.027 0.017 0.006 0.022 0.574 0.352 14 P 0.018 0.021 0.024 0.219 0.317 0.402 15 F 0.008 0.009 0.018 0.695 0.135 0.135 16 G 0.005 0.003 0.008 0.865 0.056 0.064 17 D 0.001 0.001 0.005 0.981 0.009 0.005 18 A 0.001 0.001 0.005 0.985 0.006 0.003 19 M 0.001 0.001 0.003 0.993 0.003 0.001 20 A 0.001 0.001 0.004 0.989 0.003 0.003 21 E 0.001 0.001 0.008 0.978 0.008 0.006 22 Q 0.001 0.001 0.013 0.943 0.020 0.023 23 L 0.001 0.001 0.019 0.913 0.025 0.040 24 K 0.003 0.002 0.064 0.745 0.100 0.087 25 P 0.001 0.001 0.049 0.839 0.058 0.051 26 L 0.001 0.001 0.037 0.912 0.024 0.025 27 A 0.001 0.001 0.012 0.964 0.012 0.012 28 E 0.001 0.001 0.031 0.946 0.015 0.007 29 S 0.001 0.001 0.041 0.909 0.032 0.017 30 I 0.001 0.001 0.051 0.844 0.081 0.021 31 N 0.003 0.003 0.029 0.713 0.152 0.100 32 Q 0.003 0.003 0.018 0.683 0.115 0.177 33 E 0.009 0.009 0.016 0.197 0.491 0.278 34 P 0.007 0.004 0.031 0.127 0.553 0.278 35 G 0.023 0.006 0.020 0.012 0.552 0.387 36 F 0.217 0.021 0.037 0.012 0.424 0.288 37 L 0.499 0.010 0.020 0.012 0.149 0.312 38 W 0.802 0.007 0.010 0.005 0.065 0.111 39 K 0.922 0.003 0.002 0.003 0.024 0.045 40 V 0.940 0.001 0.002 0.003 0.016 0.037 41 W 0.936 0.002 0.002 0.004 0.015 0.041 42 T 0.927 0.002 0.002 0.004 0.022 0.043 43 E 0.910 0.008 0.002 0.003 0.024 0.054 44 S 0.641 0.021 0.002 0.004 0.242 0.090 45 E 0.076 0.008 0.027 0.010 0.872 0.009 46 K 0.026 0.002 0.024 0.004 0.930 0.013 47 N 0.012 0.003 0.032 0.004 0.937 0.013 48 H 0.116 0.021 0.009 0.001 0.721 0.131 49 E 0.489 0.053 0.005 0.003 0.121 0.329 50 A 0.738 0.042 0.003 0.001 0.088 0.127 51 G 0.799 0.003 0.002 0.001 0.068 0.128 52 G 0.887 0.002 0.001 0.001 0.030 0.079 53 I 0.945 0.002 0.002 0.002 0.015 0.035 54 Y 0.951 0.003 0.001 0.003 0.012 0.031 55 L 0.901 0.005 0.002 0.005 0.024 0.063 56 F 0.600 0.009 0.006 0.009 0.107 0.270 57 T 0.208 0.014 0.007 0.018 0.225 0.528 58 D 0.035 0.006 0.005 0.036 0.210 0.708 59 E 0.002 0.001 0.025 0.927 0.030 0.015 60 K 0.002 0.001 0.024 0.949 0.019 0.005 61 S 0.002 0.001 0.020 0.949 0.022 0.005 62 A 0.002 0.001 0.011 0.972 0.009 0.006 63 L 0.001 0.001 0.012 0.976 0.007 0.004 64 A 0.001 0.001 0.015 0.962 0.013 0.008 65 Y 0.001 0.001 0.011 0.944 0.018 0.025 66 L 0.002 0.002 0.008 0.927 0.021 0.040 67 E 0.002 0.001 0.011 0.913 0.033 0.040 68 K 0.001 0.001 0.007 0.955 0.016 0.021 69 H 0.002 0.001 0.005 0.966 0.009 0.016 70 T 0.002 0.001 0.004 0.976 0.007 0.010 71 A 0.002 0.001 0.006 0.977 0.008 0.007 72 R 0.002 0.001 0.008 0.972 0.010 0.007 73 L 0.002 0.001 0.010 0.968 0.012 0.007 74 K 0.002 0.001 0.016 0.965 0.008 0.008 75 N 0.002 0.001 0.023 0.947 0.013 0.014 76 L 0.005 0.002 0.039 0.830 0.036 0.088 77 G 0.008 0.004 0.011 0.024 0.077 0.875 78 V 0.054 0.009 0.025 0.008 0.180 0.724 79 E 0.235 0.004 0.043 0.008 0.248 0.462 80 E 0.676 0.006 0.029 0.007 0.129 0.153 81 V 0.900 0.003 0.003 0.002 0.034 0.058 82 V 0.973 0.001 0.001 0.001 0.007 0.018 83 A 0.981 0.001 0.001 0.001 0.004 0.013 84 K 0.961 0.001 0.001 0.002 0.009 0.028 85 V 0.965 0.001 0.001 0.002 0.007 0.025 86 F 0.924 0.003 0.001 0.004 0.011 0.057 87 D 0.856 0.010 0.002 0.009 0.071 0.052 88 V 0.420 0.012 0.004 0.041 0.310 0.213 89 N 0.084 0.005 0.013 0.034 0.631 0.233 90 E 0.094 0.019 0.021 0.035 0.683 0.147 91 P 0.093 0.033 0.072 0.090 0.318 0.394 92 L 0.072 0.023 0.315 0.160 0.310 0.121 93 S 0.087 0.011 0.312 0.195 0.257 0.137 94 Q 0.070 0.009 0.231 0.271 0.277 0.141 95 I 0.082 0.018 0.126 0.235 0.359 0.179 96 N 0.054 0.011 0.081 0.311 0.310 0.232 97 Q 0.037 0.006 0.161 0.268 0.302 0.226 98 A 0.054 0.011 0.125 0.149 0.267 0.395 99 K 0.076 0.028 0.085 0.102 0.186 0.523 100 L 0.047 0.031 0.009 0.028 0.097 0.788 101 A 0.024 0.007 0.002 0.012 0.073 0.882