# List of top-scoring protein chains for T0263.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1f2fA 104 5.27e-02 1fmk d.93.1.1 40455 1iujA 106 1.12e-01 unknown_sccs -9953 1o4rA 108 1.90e-01 d.93.1.1 -10624 1shdA 107 2.04e-01 1fmk d.93.1.1 40440 1bkm 113 2.05e-01 1fmk d.93.1.1 40426 1skj 113 2.05e-01 1fmk d.93.1.1 40427 1bkl 113 2.06e-01 1fmk d.93.1.1 40428 1is0A 106 2.13e-01 d.93.1.1 66299 1nzlA 103 2.14e-01 d.93.1.1 86453 1p13A 102 2.19e-01 d.93.1.1 -10625 1shaA 104 2.20e-01 1fmk d.93.1.1 40424 1a1aA 107 2.36e-01 1fmk d.93.1.1 40449 1c91A 265 2.38e-01 2ebn c.1.8.5 29000 1edt 271 2.41e-01 2ebn c.1.8.5 28993 1c93A 265 2.42e-01 2ebn c.1.8.5 28998 1c92A 265 2.42e-01 2ebn c.1.8.5 29001 1c3fA 265 2.43e-01 2ebn c.1.8.5 28999 1c90A 265 2.43e-01 2ebn c.1.8.5 28996 1c8xA 265 2.46e-01 2ebn c.1.8.5 28994 1c8yA 265 2.86e-01 2ebn c.1.8.5 28995 1lq9A 112 5.22e-01 d.58.4.3 78129 1lvmA 229 1.18e+00 b.47.1.3 78243 1lvbA 243 1.35e+00 b.47.1.3 78234 1g60A 260 1.60e+00 c.66.1.11 70151 1nmeB 92 1.64e+00 2ptk 453 1.65e+00 1fmk b.34.2.1 24517 d.93.1.1 40457 d.144.1.7 41692 1gfwB 97 1.69e+00 1pauB 1rhkB 102 1.73e+00 1rhjB 110 1.78e+00 1fmk 452 1.87e+00 1fmk b.34.2.1 24511 d.93.1.1 40436 d.144.1.7 41690 1kswA 452 1.95e+00 b.34.2.1 68860 d.93.1.1 68861 d.144.1.7 68862 1cvjA 190 1.95e+00 1cvjB d.58.7.1 39191 d.58.7.1 39192 1rvfL 110 1.96e+00 8fabA b.1.1.1 19990 1iw0A 215 2.35e+00 a.132.1.1 83720 1e44B 96 2.53e+00 1e44B b.101.1.1 59220 1who 96 3.21e+00 1who b.7.3.1 23215 1nmsA 249 3.60e+00 c.17.1.1 85879 1pskL 213 3.60e+00 8fabA b.1.1.1 20138 b.1.1.2 21168 1jllB 388 3.61e+00 c.23.4.1 66853 d.142.1.4 66854 1cqjB 385 3.63e+00 2scuB c.23.4.1 31143 d.142.1.4 41564 2scuB 388 3.63e+00 2scuB c.23.4.1 31141 d.142.1.4 41562 1qx3A 257 3.63e+00 c.17.1.1 -7914 1cp3A 277 3.93e+00 1pauA c.17.1.1 30992 1kc2A 103 4.29e+00 d.93.1.1 72291 1ihuA 589 4.58e+00 c.37.1.10 62394 c.37.1.10 62395 1p1oA 263 4.74e+00 c.94.1.1 87699 1p1wA 263 4.78e+00 c.94.1.1 87713 1mqhA 263 4.83e+00 c.94.1.1 -8680 1jae 471 4.97e+00 1smd b.71.1.1 27773 c.1.8.1 28760 1viwA 471 4.97e+00 1smd b.71.1.1 27776 c.1.8.1 28763 1lbcA 263 5.28e+00 c.94.1.1 73805 1m5dA 263 5.33e+00 c.94.1.1 78641 1mqdA 261 5.34e+00 c.94.1.1 85049 1mqiA 263 5.40e+00 c.94.1.1 -8681 1ftkA 279 5.42e+00 1gr2A c.94.1.1 35819 1lb8A 263 5.45e+00 c.94.1.1 73800 1lbbA 263 5.47e+00 c.94.1.1 73804 1gpwA 253 5.90e+00 c.1.2.1 65460 1thfD 253 5.96e+00 1thfD c.1.2.1 28535 1vh7A 265 6.05e+00 c.1.2.1 -5159 1forL 210 6.35e+00 8fabA b.1.1.1 19988 b.1.1.2 21044 1pkqA 241 6.44e+00 b.1.1.1 88148 b.1.1.2 88149 1iybA 208 6.73e+00 d.124.1.1 -10977 1qokA 282 6.81e+00 1f3rB b.1.1.1 20493 b.1.1.1 20492 1v03A 565 7.00e+00 1de8A 276 7.00e+00 1bix d.151.1.1 41788 1dewA 279 7.01e+00 1bix d.151.1.1 41786 1bix 287 7.08e+00 1bix d.151.1.1 41781 1hd7A 318 7.19e+00 1bix d.151.1.1 41780 1led 243 7.67e+00 1led b.29.1.1 24039 1jjoC 261 8.13e+00 1eceA 358 8.19e+00 1eceA c.1.8.3 28813 1pnuL 114 8.53e+00 i.1.1.1 88209 1nkwL 116 8.57e+00 i.1.1.2 80597 1jb9A 316 8.62e+00 1fnc b.43.4.2 62840 c.25.1.1 62841 1mjeA 649 9.22e+00 a.170.1.1 79193 a.171.1.1 79194 b.40.4.3 79195 b.40.4.3 79196 b.40.4.3 79197 1miuA 738 9.41e+00 a.170.1.1 79153 a.171.1.1 79154 b.40.4.3 79155 b.40.4.3 79156 b.40.4.3 79157 1orsA 214 9.42e+00 b.1.1.1 87349 b.1.1.2 87350 2fb4L 216 9.60e+00 8fabA b.1.1.1 19846 b.1.1.2 20950 1n64P 16 9.89e+00 1v7mL 213 1.05e+01 b.1.1.1 -2116 b.1.1.2 -2390 1veiA 183 1.06e+01 1cf8L 215 1.07e+01 8fabA b.1.1.1 20378 b.1.1.2 21370 1wjeA 46 1.09e+01 1wjcA a.4.10.1 16263 1wjfA 55 1.17e+01 1wjcA a.4.10.1 16267 1pv9A 348 1.20e+01 c.55.2.1 -7610 d.127.1.1 -11000 1cwxA 44 1.28e+01 1cwxA j.54.1.1 46338 1v02A 565 1.30e+01 1v02E 565 1.34e+01 15c8L 213 1.42e+01 8fabA b.1.1.1 20300 b.1.1.2 21292 35c8L 212 1.42e+01 8fabA b.1.1.1 20296 b.1.1.2 21288 1kcbA 340 1.53e+01 b.6.1.3 -2950 b.6.1.3 -2951 1c0dA 358 1.54e+01 1eceA c.1.8.3 28815 1kg7A 225 1.60e+01 a.96.1.2 77383 1i51B 105 1.67e+01 1f8rA 498 1.67e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974 1movA 219 1.70e+01 d.22.1.1 85038 1kg2A 225 1.73e+01 a.96.1.2 77378 1kenL 213 1.75e+01 b.1.1.1 72381 b.1.1.2 72382 1bx0A 314 1.76e+01 1fnc b.43.4.2 25630 c.25.1.1 31520 1kqjA 225 1.77e+01 a.96.1.2 72879 1frn 314 1.78e+01 1fnc b.43.4.2 25631 c.25.1.1 31521 1frqA 314 1.80e+01 1fnc b.43.4.2 25632 c.25.1.1 31522 1bx1A 314 1.83e+01 1fnc b.43.4.2 25629 c.25.1.1 31519 1nksA 194 1.88e+01 1nksA c.37.1.1 31886 1n4qB 377 1.90e+01 a.102.4.3 -1424 1jchA 551 1.93e+01 b.101.1.1 66491 b.110.1.1 66492 h.4.9.1 66493 1ijrA 104 1.98e+01 d.93.1.1 71238 1mouA 219 1.99e+01 d.22.1.1 85037 1mimL 210 2.00e+01 8fabA b.1.1.1 20128 b.1.1.2 21158 1fbzA 104 2.00e+01 1lckA d.93.1.1 40422 1dpe 507 2.05e+01 1dpe c.94.1.1 35799 1fnd 314 2.11e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1h49A 512 2.11e+01 c.1.8.4 83477 1v08A 512 2.17e+01 1pz8A 201 2.18e+01 b.29.1.4 -3441 1dppA 507 2.20e+01 1dpe c.94.1.1 35800 1hxjA 507 2.20e+01 c.1.8.4 76729 1e1eA 512 2.21e+01 1e70M c.1.8.4 28944 1kg5A 225 2.21e+01 a.96.1.2 77381 1khcA 147 2.22e+01 b.34.9.2 68608 1s1i9 91 2.41e+01 1k1xA 659 2.41e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1bc5A 269 2.59e+01 1af7 a.58.1.1 17929 c.66.1.8 34204 1af7 274 2.61e+01 1af7 a.58.1.1 17928 c.66.1.8 34203 1g1eB 89 2.62e+01 1g1eB a.59.1.1 17931 1ob1A 215 2.64e+01 b.1.1.1 86748 b.1.1.2 86749 1ifi 50 2.73e+01 1ifi h.1.4.1 45551 1fobA 334 2.79e+01 c.1.8.3 83255 1nijA 318 2.83e+01 c.37.1.10 85741 d.237.1.1 85742 1lcjA 109 2.83e+01 1qadA d.93.1.1 40414 1wjaA 47 2.84e+01 1wjcA a.4.10.1 16259 1bhfA 108 2.86e+01 1qadA d.93.1.1 40415 2cpb 50 2.87e+01 2cpb h.1.4.1 45568 1p4tA 155 2.87e+01 f.4.1.1 87779 1cbg 490 2.91e+01 1e70M c.1.8.4 28933 1mjfA 281 2.93e+01 c.66.1.17 79198 1lkkA 105 2.94e+01 1lckA d.93.1.1 40412 1gglA 134 2.95e+01 1hmt b.60.1.2 60484 1lklA 104 2.98e+01 1qadA d.93.1.1 40413 1cwdL 98 2.99e+01 1lckA d.93.1.1 40418 1bhhB 103 3.01e+01 1lckA d.93.1.1 40417 1oa3A 218 3.01e+01 b.29.1.11 86727 1reiA 107 3.02e+01 8fabA b.1.1.1 20520 1mun 225 3.06e+01 1mun a.96.1.2 18744 1i6cA 39 3.08e+01 1i6cA b.72.1.1 61828 1wjbA 55 3.08e+01 1wjcA a.4.10.1 16265 1ujvA 96 3.08e+01 b.36.1.1 -3753 1bvaA 294 3.11e+01 1ryc a.93.1.1 18604 1bwwA 109 3.15e+01 8fabA b.1.1.1 20518 1nif 340 3.16e+01 1nif b.6.1.3 23048 b.6.1.3 23049 1k28D 391 3.17e+01 b.106.1.1 68052 b.106.1.1 68053 1qysA 106 3.19e+01 unknown_sccs -13432 1kg6A 225 3.22e+01 a.96.1.2 77382 1rzpA 335 3.24e+01 b.6.1.3 -2952 b.6.1.3 -2953 1cm7A 363 3.37e+01 1cnzA c.77.1.1 35063 1uvqB 198 3.38e+01 b.1.1.2 -2659 d.19.1.1 -9348 1h0dA 216 3.39e+01 b.1.1.1 83425 b.1.1.2 83426 1s3gA 217 3.46e+01 c.37.1.1 -6998 g.41.2.1 -12771 1j32A 388 3.63e+01 c.67.1.1 77067 1ar2 109 3.64e+01 8fabA b.1.1.1 20522 1ag4 103 3.64e+01 1ag4 b.11.1.1 23629 1i9wA 390 3.65e+01 b.1.18.4 71163 f.10.1.1 71164 1rerA 391 3.66e+01 b.1.18.4 -2740 f.10.1.1 -12385 1kg4A 225 3.68e+01 a.96.1.2 77380 1hdfA 102 3.70e+01 1ag4 b.11.1.1 23627 1rktA 205 3.80e+01 a.4.1.9 -210 a.121.1.1 -1663 1ku9A 152 3.82e+01 a.4.5.36 77544 1i7hA 111 3.84e+01 d.15.4.1 71122 1cnzA 363 3.93e+01 1cnzA c.77.1.1 35061 1ja0A 620 3.93e+01 1amoA b.43.4.1 62798 c.23.5.2 62799 c.25.1.4 62800 1a6tA 210 3.95e+01 8fabA b.1.1.1 20248 b.1.1.2 21258 1amoA 615 3.98e+01 1amoA b.43.4.1 25669 c.23.5.2 31210 c.25.1.4 31557 1j9zA 622 3.99e+01 1amoA b.43.4.1 62792 c.23.5.2 62793 c.25.1.4 62794