# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lq9A 112 2.90e-03 d.58.4.3 78129 1iujA 106 5.98e-03 unknown_sccs -9953 1edt 271 2.22e-02 2ebn c.1.8.5 28993 1qysA 106 1.59e-01 unknown_sccs -13432 1q4rA 112 1.87e-01 d.58.4.4 -9943 1g0cA 364 2.94e-01 7a3hA c.1.8.3 60165 1q8bA 105 4.35e-01 unknown_sccs -9958 1a4iA 301 6.19e-01 1a4iA c.2.1.7 30278 c.58.1.2 33926 1bm9A 122 9.41e-01 1bm9A a.4.5.7 16116 1cnt1 187 1.24e+00 1cnt3 1dtdA 303 1.51e+00 1aye c.56.5.1 33823 1shdA 107 1.57e+00 1fmk d.93.1.1 40440 1o4rA 108 2.13e+00 d.93.1.1 -10624 1bag 425 2.24e+00 1bag b.71.1.1 27720 c.1.8.1 28707 1jmtA 104 2.29e+00 d.58.7.3 63180 1nv8A 284 3.49e+00 c.66.1.30 86224 1j5yA 187 3.97e+00 a.4.5.1 71592 d.94.2.1 71593 1qb0A 211 4.36e+00 1c25 c.46.1.1 32699 1shbA 104 4.60e+00 1fmk d.93.1.1 40425 1af7 274 4.94e+00 1af7 a.58.1.1 17928 c.66.1.8 34203 1ro0A 216 4.95e+00 unknown_sccs -11390 1mml 265 5.08e+00 1mml e.8.1.2 43015 1ro2A 216 5.44e+00 unknown_sccs -11391 1sb8A 352 5.44e+00 1goiA 499 6.30e+00 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1fxlA 167 6.64e+00 1b7fA d.58.7.1 39183 d.58.7.1 39184 1e6pA 499 6.87e+00 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1d2kA 392 6.99e+00 1d2kA c.1.8.5 29008 d.26.3.1 38442 1tidB 119 7.04e+00 1n13B 113 7.29e+00 1iibA 106 7.45e+00 1iibA c.44.2.1 32648 1ll7A 392 7.54e+00 c.1.8.5 78085 d.26.3.1 78086 1thfD 253 7.89e+00 1thfD c.1.2.1 28535 1js3A 486 7.91e+00 c.67.1.6 67215 1h9dB 134 8.00e+00 2jhbA b.54.1.1 60822 1h09A 338 8.21e+00 b.109.1.1 83420 c.1.8.8 83421 1j27A 102 8.45e+00 unknown_sccs -10116 1o0uA 429 8.65e+00 c.118.1.1 80743 1im8A 244 8.66e+00 c.66.1.14 66212 1v02A 565 8.68e+00 1omzA 293 8.70e+00 c.68.1.15 87093 1bvyF 191 8.72e+00 1bvyF c.23.5.1 31207 1gy8A 397 8.78e+00 c.2.1.2 83376 1whsA 255 8.80e+00 1ivyA c.69.1.5 34649 1v84A 253 9.43e+00 1g8kA 825 9.78e+00 1g8jA b.52.2.2 26920 c.81.1.1 35328 1whtA 256 9.98e+00 1ivyA c.69.1.5 34646 1e44B 96 1.03e+01 1e44B b.101.1.1 59220 1itxA 419 1.08e+01 c.1.8.5 71425 d.26.3.1 71426 1r2qA 170 1.16e+01 c.37.1.8 -7071 1g60A 260 1.18e+01 c.66.1.11 70151 1m4jA 142 1.20e+01 d.109.1.2 78602 2myr 501 1.22e+01 1fi4A 416 1.23e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1mwqA 101 1.24e+01 unknown_sccs -9962 2igd 61 1.27e+01 2igd d.15.7.1 37821 1e4mM 501 1.31e+01 1e70M c.1.8.4 59226 1urrA 102 1.32e+01 1prxA 224 1.35e+01 1prxA c.47.1.10 33076 1i8jA 323 1.36e+01 1b4kA c.1.10.3 61968 1l6sA 323 1.37e+01 c.1.10.3 73627 1h49A 512 1.41e+01 c.1.8.4 83477 1urnA 97 1.44e+01 1urnA d.58.7.1 39153 1m7xA 617 1.49e+01 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1jw9B 249 1.49e+01 c.111.1.1 67377 1mqiA 263 1.68e+01 c.94.1.1 -8681 1fpzA 212 1.71e+01 1fpzA c.45.1.1 59976 1c25 161 1.72e+01 1c25 c.46.1.1 32698 1lvmA 229 1.74e+01 b.47.1.3 78243 1ha1 184 1.75e+01 1ha1 d.58.7.1 39147 d.58.7.1 39148 1mkeA 152 1.82e+01 b.55.1.4 79231 1bg0 356 1.92e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1m15A 357 1.92e+01 a.83.1.1 78368 d.128.1.2 78369 1hvyA 288 1.93e+01 1bkpA d.117.1.1 41049 1ubeA 349 1.97e+01 c.37.1.11 88412 d.48.1.1 88413 1r8hA 87 1.99e+01 d.58.8.1 -10041 1lzlA 323 2.00e+01 c.69.1.2 78306 1l3kA 196 2.01e+01 d.58.7.1 73539 d.58.7.1 73540 1pqnA 127 2.02e+01 c.47.1.8 -7479 7a3hA 303 2.04e+01 7a3hA c.1.8.3 28817 1e55A 512 2.06e+01 1e70M c.1.8.4 28934 1ftkA 279 2.09e+01 1gr2A c.94.1.1 35819 1r3sA 367 2.09e+01 c.1.22.1 -5648 1fiqB 350 2.10e+01 1fiqB d.87.2.1 40229 d.145.1.3 41760 1bjx 110 2.12e+01 1bjx c.47.1.2 32774 1umhA 184 2.14e+01 unknown_sccs -3127 1qfeA 252 2.16e+01 1qfeA c.1.10.1 29167 1uroA 367 2.22e+01 1uroA c.1.22.1 29675 1lkkA 105 2.25e+01 1lckA d.93.1.1 40412 1hkkA 364 2.27e+01 c.1.8.5 -5384 d.26.3.1 -9506 1m2tB 263 2.38e+01 b.42.2.1 84762 b.42.2.1 84763 1sr9A 644 2.45e+01 1evhA 112 2.50e+01 1evhA b.55.1.4 26997 1o6dA 163 2.52e+01 c.116.1.3 -6689 1eceA 358 2.58e+01 1eceA c.1.8.3 28813 1jfrA 262 2.62e+01 1jfrA c.69.1.16 34724 1kao 167 2.63e+01 1ctqA c.37.1.8 32014 1nthA 458 2.69e+01 c.1.25.1 80730 1cb0A 283 2.72e+01 1cb0A c.56.2.1 33790 1ta3B 303 2.73e+01 1st9A 143 2.78e+01 c.47.1.10 -7503 1v6fA 151 2.80e+01 1qgvA 142 2.86e+01 1qgvA c.47.1.8 33056 1jae 471 2.87e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1uuqA 440 2.88e+01 c.1.8.3 -5321 1pyaB 228 2.93e+01 1pyaB 1vhsA 175 2.95e+01 d.108.1.1 -10794 1j6pA 418 2.99e+01 b.92.1.4 77089 c.1.9.9 77090 1iznB 277 3.03e+01 e.43.1.2 83848 1b8oA 284 3.03e+01 1b8oA c.56.2.1 33762 1o54A 277 3.07e+01 c.66.1.13 -8095 1q1oA 98 3.07e+01 d.15.2.2 -9172 1p1mA 406 3.07e+01 b.92.1.4 87696 c.1.9.9 87697 1j5vA 351 3.11e+01 c.72.1.1 71585 1nu0A 138 3.15e+01 unknown_sccs -7658 1n0wA 243 3.18e+01 c.37.1.11 79772 1rpjA 288 3.20e+01 2dri c.93.1.1 35656 1h10A 125 3.20e+01 b.55.1.1 83446 1q7zA 566 3.20e+01 c.1.21.2 -5638 c.1.26.1 -5666 1g71A 347 3.23e+01 1g71A unknown_sccs 43268 1uc8A 280 3.25e+01 unknown_sccs -6718 unknown_sccs -11230 1lwdA 413 3.25e+01 c.77.1.1 78265 2ebn 289 3.26e+01 2ebn c.1.8.5 28990 1huqA 164 3.28e+01 1byuA c.37.1.8 32020 1i1wA 303 3.28e+01 c.1.8.3 76732 1inp 400 3.30e+01 1inp e.7.1.1 42972 1h5qA 265 3.36e+01 1cydA c.2.1.2 60643 1spvA 184 3.38e+01 c.50.1.2 -7937 1v5wA 343 3.41e+01 1e4iA 447 3.41e+01 1e70M c.1.8.4 59225 1b5tA 275 3.46e+01 1b5tA c.1.23.1 29676 1m1nB 522 3.48e+01 c.92.2.3 78418 1bhtA 176 3.49e+01 1bhtA g.10.1.1 44603 g.14.1.1 44663 1budA 197 3.53e+01 1atlA d.92.1.9 40328 1mj4A 82 3.57e+01 d.120.1.1 79189 1va4A 279 3.58e+01 1nox 205 3.67e+01 1nox d.90.1.1 40242 2aaa 484 3.68e+01 7taa b.71.1.1 27777 c.1.8.1 28764 1jwqA 179 3.68e+01 unknown_sccs -7897 1svy 114 3.69e+01 1svy d.109.1.1 40831 1c4kA 730 3.69e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1forL 210 3.74e+01 8fabA b.1.1.1 19988 b.1.1.2 21044 1dwkA 156 3.74e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1r12A 258 3.75e+01 e.4.1.1 -11807 1riqA 465 3.75e+01 unknown_sccs -1295 d.104.1.1 -10769 1owqA 361 3.78e+01 1fxmA 302 3.85e+01 1taxA 1r7aA 504 3.87e+01 b.71.1.1 -4664 c.1.8.1 -5283 1bn7A 294 3.89e+01 1bn6A c.69.1.8 34677 1p1xA 260 3.90e+01 3c2c 112 3.97e+01 1ycc a.3.1.1 15885