# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iujA 106 1.29e-03 unknown_sccs -9953 1lq9A 112 1.79e-03 d.58.4.3 78129 1edt 271 8.26e-03 2ebn c.1.8.5 28993 1q4rA 112 1.55e-01 d.58.4.4 -9943 1qysA 106 4.12e-01 unknown_sccs -13432 1bm9A 122 8.33e-01 1bm9A a.4.5.7 16116 1jmtA 104 1.03e+00 d.58.7.3 63180 1g0cA 364 1.04e+00 7a3hA c.1.8.3 60165 1shdA 107 1.18e+00 1fmk d.93.1.1 40440 1cnt1 187 1.18e+00 1cnt3 1af7 274 1.49e+00 1af7 a.58.1.1 17928 c.66.1.8 34203 1o4rA 108 1.50e+00 d.93.1.1 -10624 1a4iA 301 1.75e+00 1a4iA c.2.1.7 30278 c.58.1.2 33926 1v02A 565 1.78e+00 1j5yA 187 1.80e+00 a.4.5.1 71592 d.94.2.1 71593 1shbA 104 1.82e+00 1fmk d.93.1.1 40425 1o0uA 429 2.14e+00 c.118.1.1 80743 1q8bA 105 3.64e+00 unknown_sccs -9958 1j27A 102 3.65e+00 unknown_sccs -10116 1fxlA 167 3.70e+00 1b7fA d.58.7.1 39183 d.58.7.1 39184 1qb0A 211 3.83e+00 1c25 c.46.1.1 32699 1h09A 338 4.30e+00 b.109.1.1 83420 c.1.8.8 83421 1nu0A 138 4.44e+00 unknown_sccs -7658 1e44B 96 4.46e+00 1e44B b.101.1.1 59220 1sb8A 352 4.63e+00 1ro2A 216 4.63e+00 unknown_sccs -11391 1ro0A 216 4.71e+00 unknown_sccs -11390 1e55A 512 4.73e+00 1e70M c.1.8.4 28934 1h49A 512 4.77e+00 c.1.8.4 83477 1dtdA 303 5.15e+00 1aye c.56.5.1 33823 1eceA 358 5.17e+00 1eceA c.1.8.3 28813 1m15A 357 5.29e+00 a.83.1.1 78368 d.128.1.2 78369 1ftkA 279 5.62e+00 1gr2A c.94.1.1 35819 1khbA 625 5.84e+00 c.91.1.1 68606 c.109.1.1 68607 1g60A 260 5.90e+00 c.66.1.11 70151 1j9yA 385 6.40e+00 1j9yA c.1.8.3 62791 1d2kA 392 6.68e+00 1d2kA c.1.8.5 29008 d.26.3.1 38442 1urrA 102 7.54e+00 1ll7A 392 7.62e+00 c.1.8.5 78085 d.26.3.1 78086 1umhA 184 7.92e+00 unknown_sccs -3127 1odzA 386 8.10e+00 c.1.8.3 86889 1fi4A 416 8.38e+00 1fi4A d.14.1.5 59847 d.58.26.2 59848 1vkbA 161 8.66e+00 1bag 425 8.79e+00 1bag b.71.1.1 27720 c.1.8.1 28707 1thfD 253 9.11e+00 1thfD c.1.2.1 28535 1n13B 113 9.17e+00 7a3hA 303 9.55e+00 7a3hA c.1.8.3 28817 1mml 265 1.07e+01 1mml e.8.1.2 43015 1iibA 106 1.17e+01 1iibA c.44.2.1 32648 1tidB 119 1.23e+01 1bg0 356 1.25e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1on0A 158 1.36e+01 d.108.1.1 87095 1h9dB 134 1.37e+01 2jhbA b.54.1.1 60822 1gy8A 397 1.38e+01 c.2.1.2 83376 1whtA 256 1.39e+01 1ivyA c.69.1.5 34646 1v1aA 309 1.43e+01 c.72.1.1 -8400 1goiA 499 1.46e+01 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1bjx 110 1.49e+01 1bjx c.47.1.2 32774 1im8A 244 1.50e+01 c.66.1.14 66212 2ebn 289 1.50e+01 2ebn c.1.8.5 28990 1e6pA 499 1.63e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1whsA 255 1.69e+01 1ivyA c.69.1.5 34649 1fiqB 350 1.71e+01 1fiqB d.87.2.1 40229 d.145.1.3 41760 1o0pA 104 1.75e+01 d.58.7.1 86535 1dpe 507 1.79e+01 1dpe c.94.1.1 35799 1a0cA 438 1.79e+01 1a0cA c.1.15.3 29529 1mqiA 263 1.88e+01 c.94.1.1 -8681 2igd 61 1.90e+01 2igd d.15.7.1 37821 1nox 205 1.92e+01 1nox d.90.1.1 40242 2myr 501 1.93e+01 1nv8A 284 1.94e+01 c.66.1.30 86224 1e4mM 501 1.94e+01 1e70M c.1.8.4 59226 1jwqA 179 2.01e+01 unknown_sccs -7897 1sr9A 644 2.04e+01 1ppjB 439 2.11e+01 1l0lB 439 2.11e+01 d.185.1.1 84484 d.185.1.1 84485 1e4iA 447 2.13e+01 1e70M c.1.8.4 59225 1s2dA 167 2.21e+01 c.23.14.1 -6469 1prxA 224 2.24e+01 1prxA c.47.1.10 33076 1itxA 419 2.32e+01 c.1.8.5 71425 d.26.3.1 71426 1mkeA 152 2.34e+01 b.55.1.4 79231 1qgvA 142 2.36e+01 1qgvA c.47.1.8 33056 1kpgA 287 2.41e+01 c.66.1.18 68735 1ta3B 303 2.41e+01 1oflA 481 2.44e+01 1ubeA 349 2.44e+01 c.37.1.11 88412 d.48.1.1 88413 1b5tA 275 2.45e+01 1b5tA c.1.23.1 29676 1oapA 109 2.49e+01 unknown_sccs -10428 1c4kA 730 2.51e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1dboA 506 2.54e+01 1dbgA b.80.1.4 28034 1evhA 112 2.54e+01 1evhA b.55.1.4 26997 1dbgA 506 2.55e+01 1dbgA b.80.1.4 28033 1vjzA 341 2.69e+01 c.1.8.3 -5318 1l8nA 679 2.70e+01 c.1.8.10 84564 d.92.2.2 84565 1forL 210 2.79e+01 8fabA b.1.1.1 19988 b.1.1.2 21044 1sacA 204 2.82e+01 1sacA b.29.1.5 24237 1c25 161 2.84e+01 1c25 c.46.1.1 32698 2ptd 298 2.87e+01 2plc c.1.18.2 29605 1b3tA 147 2.93e+01 1b3tA d.58.8.1 39228 1btkA 169 2.94e+01 1btkA b.55.1.1 26959 1g8kA 825 2.98e+01 1g8jA b.52.2.2 26920 c.81.1.1 35328 1k77A 260 2.98e+01 c.1.15.5 72096 1jae 471 2.99e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1omzA 293 3.05e+01 c.68.1.15 87093 1pqnA 127 3.06e+01 c.47.1.8 -7479 1lvmA 229 3.07e+01 b.47.1.3 78243 3pviA 157 3.13e+01 3pviA c.52.1.6 33300 1vid 221 3.21e+01 1vid c.66.1.1 34178 1bjt 793 3.23e+01 1bjt e.11.1.1 43249 1mwqA 101 3.27e+01 unknown_sccs -9962 1v84A 253 3.29e+01 1eg2A 319 3.30e+01 1eg2A c.66.1.11 34249 1luzA 88 3.35e+01 b.40.4.5 74271 1jr8A 117 3.38e+01 a.24.15.1 67115 1urnA 97 3.39e+01 1urnA d.58.7.1 39153 1g71A 347 3.43e+01 1g71A unknown_sccs 43268 1t3uA 104 3.44e+01 unknown_sccs -9325 1vhiA 142 3.44e+01 1b3tA d.58.8.1 39230 1n82A 331 3.44e+01 c.1.8.3 -5306 1i1wA 303 3.46e+01 c.1.8.3 76732 1va4A 279 3.49e+01 1mjfA 281 3.50e+01 c.66.1.17 79198 1nmeB 92 3.53e+01 1iv3A 152 3.56e+01 d.79.5.1 76828 1hvyA 288 3.59e+01 1bkpA d.117.1.1 41049 1h10A 125 3.61e+01 b.55.1.1 83446 1m7xA 617 3.67e+01 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1n7hA 381 3.70e+01 c.2.1.2 80250 1pbgA 468 3.73e+01 1e70M c.1.8.4 28946 5nul 138 3.73e+01 5nul c.23.5.1 31191 1js3A 486 3.73e+01 c.67.1.6 67215 1tz9A 367 3.75e+01 1r1dA 247 3.77e+01 unknown_sccs -8335 1k28D 391 3.80e+01 b.106.1.1 68052 b.106.1.1 68053 1l3kA 196 3.84e+01 d.58.7.1 73539 d.58.7.1 73540 1uu1A 335 3.85e+01 c.67.1.1 -8146 1ur3M 319 3.86e+01 c.1.7.1 -5248 1nlnA 204 3.86e+01 d.3.1.7 -8897 1lzlA 323 3.90e+01 c.69.1.2 78306 1pyaB 228 3.94e+01 1pyaB 1cb0A 283 3.95e+01 1cb0A c.56.2.1 33790 1uroA 367 3.97e+01 1uroA c.1.22.1 29675 1r3sA 367 4.00e+01 c.1.22.1 -5648