# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lq9A 112 9.77e-04 d.58.4.3 78129 1iujA 106 1.15e-03 unknown_sccs -9953 1edt 271 6.02e-02 2ebn c.1.8.5 28993 1q4rA 112 2.09e-01 d.58.4.4 -9943 1q8bA 105 2.10e-01 unknown_sccs -9958 1g0cA 364 2.74e-01 7a3hA c.1.8.3 60165 1bm9A 122 2.82e-01 1bm9A a.4.5.7 16116 1qysA 106 3.18e-01 unknown_sccs -13432 1jmtA 104 8.44e-01 d.58.7.3 63180 1fxlA 167 9.36e-01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1a4iA 301 1.09e+00 1a4iA c.2.1.7 30278 c.58.1.2 33926 1cnt1 187 1.65e+00 1cnt3 1o0uA 429 2.02e+00 c.118.1.1 80743 1j5yA 187 2.11e+00 a.4.5.1 71592 d.94.2.1 71593 1o4rA 108 2.39e+00 d.93.1.1 -10624 1shbA 104 2.73e+00 1fmk d.93.1.1 40425 1iibA 106 2.82e+00 1iibA c.44.2.1 32648 1ro0A 216 2.88e+00 unknown_sccs -11390 1dtdA 303 2.91e+00 1aye c.56.5.1 33823 1v02A 565 3.24e+00 1af7 274 3.40e+00 1af7 a.58.1.1 17928 c.66.1.8 34203 1sb8A 352 3.42e+00 1ro2A 216 3.44e+00 unknown_sccs -11391 1qb0A 211 4.04e+00 1c25 c.46.1.1 32699 1mml 265 4.09e+00 1mml e.8.1.2 43015 7a3hA 303 4.21e+00 7a3hA c.1.8.3 28817 1shdA 107 4.53e+00 1fmk d.93.1.1 40440 1d2kA 392 4.92e+00 1d2kA c.1.8.5 29008 d.26.3.1 38442 1whtA 256 4.98e+00 1ivyA c.69.1.5 34646 1omzA 293 5.09e+00 c.68.1.15 87093 1ll7A 392 5.09e+00 c.1.8.5 78085 d.26.3.1 78086 1nu0A 138 5.10e+00 unknown_sccs -7658 1g8kA 825 5.47e+00 1g8jA b.52.2.2 26920 c.81.1.1 35328 1j27A 102 5.64e+00 unknown_sccs -10116 1h49A 512 5.75e+00 c.1.8.4 83477 1kao 167 5.79e+00 1ctqA c.37.1.8 32014 1whsA 255 5.80e+00 1ivyA c.69.1.5 34649 1e55A 512 5.84e+00 1e70M c.1.8.4 28934 1h9dB 134 5.86e+00 2jhbA b.54.1.1 60822 1goiA 499 6.30e+00 b.72.2.1 65413 c.1.8.5 65414 d.26.3.1 65415 1l3kA 196 6.66e+00 d.58.7.1 73539 d.58.7.1 73540 1im8A 244 6.75e+00 c.66.1.14 66212 1fsu 492 6.81e+00 1auk c.76.1.2 35032 1e6pA 499 7.08e+00 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1urnA 97 7.17e+00 1urnA d.58.7.1 39153 1js3A 486 7.41e+00 c.67.1.6 67215 1ha1 184 7.66e+00 1ha1 d.58.7.1 39147 d.58.7.1 39148 1oflA 481 7.68e+00 1tidB 119 7.85e+00 1fi4A 416 7.86e+00 1fi4A d.14.1.5 59847 d.58.26.2 59848 1dbgA 506 7.96e+00 1dbgA b.80.1.4 28033 1dboA 506 7.97e+00 1dbgA b.80.1.4 28034 2igd 61 8.47e+00 2igd d.15.7.1 37821 1gy8A 397 8.61e+00 c.2.1.2 83376 1n13B 113 8.83e+00 1v1aA 309 9.42e+00 c.72.1.1 -8400 1itxA 419 9.70e+00 c.1.8.5 71425 d.26.3.1 71426 1cb0A 283 9.79e+00 1cb0A c.56.2.1 33790 1e44B 96 9.97e+00 1e44B b.101.1.1 59220 1evhA 112 1.01e+01 1evhA b.55.1.4 26997 1o0pA 104 1.02e+01 d.58.7.1 86535 1umhA 184 1.05e+01 unknown_sccs -3127 1g60A 260 1.05e+01 c.66.1.11 70151 1urrA 102 1.07e+01 1r2qA 170 1.08e+01 c.37.1.8 -7071 1mkeA 152 1.08e+01 b.55.1.4 79231 1c25 161 1.09e+01 1c25 c.46.1.1 32698 1jw9B 249 1.13e+01 c.111.1.1 67377 1jclA 260 1.13e+01 c.1.10.1 66501 1c4kA 730 1.14e+01 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 1uroA 367 1.15e+01 1uroA c.1.22.1 29675 1r3sA 367 1.16e+01 c.1.22.1 -5648 1p1xA 260 1.17e+01 1i8jA 323 1.23e+01 1b4kA c.1.10.3 61968 1fpzA 212 1.25e+01 1fpzA c.45.1.1 59976 1vkbA 161 1.25e+01 1nv8A 284 1.26e+01 c.66.1.30 86224 1tca 317 1.29e+01 1tca c.69.1.17 34726 1g71A 347 1.30e+01 1g71A unknown_sccs 43268 1nhkL 144 1.35e+01 1npk d.58.6.1 39142 1thfD 253 1.36e+01 1thfD c.1.2.1 28535 1ub1A 133 1.41e+01 d.10.1.3 -8969 1qgvA 142 1.45e+01 1qgvA c.47.1.8 33056 1ftkA 279 1.49e+01 1gr2A c.94.1.1 35819 1nthA 458 1.53e+01 c.1.25.1 80730 2myr 501 1.59e+01 1e9lA 377 1.61e+01 1e9lA c.1.8.5 59395 d.26.3.1 59396 1ubeA 349 1.63e+01 c.37.1.11 88412 d.48.1.1 88413 1jyhA 157 1.63e+01 d.60.1.3 71956 1kpgA 287 1.63e+01 c.66.1.18 68735 1e4mM 501 1.64e+01 1e70M c.1.8.4 59226 1btkA 169 1.67e+01 1btkA b.55.1.1 26959 1gudA 288 1.69e+01 c.93.1.1 83326 1h09A 338 1.75e+01 b.109.1.1 83420 c.1.8.8 83421 3pviA 157 1.77e+01 3pviA c.52.1.6 33300 1rkuA 206 1.77e+01 unknown_sccs -6823 1bag 425 1.81e+01 1bag b.71.1.1 27720 c.1.8.1 28707 2ebn 289 1.83e+01 2ebn c.1.8.5 28990 1mqiA 263 1.85e+01 c.94.1.1 -8681 1n7hA 381 1.86e+01 c.2.1.2 80250 1uuqA 440 1.88e+01 c.1.8.3 -5321 1sacA 204 1.92e+01 1sacA b.29.1.5 24237 1hkkA 364 1.93e+01 c.1.8.5 -5384 d.26.3.1 -9506 1r1dA 247 1.96e+01 unknown_sccs -8335 1mszA 86 1.99e+01 d.68.7.1 79428 1b8oA 284 2.02e+01 1b8oA c.56.2.1 33762 1nox 205 2.05e+01 1nox d.90.1.1 40242 1ekeA 230 2.10e+01 1ekeA c.55.3.1 33572 1o60A 292 2.11e+01 c.1.10.4 -5549 1svy 114 2.12e+01 1svy d.109.1.1 40831 1vkmA 297 2.12e+01 1rpjA 288 2.15e+01 2dri c.93.1.1 35656 1mwqA 101 2.17e+01 unknown_sccs -9962 1va4A 279 2.17e+01 1gqnA 252 2.19e+01 c.1.10.1 -5494 1lxnA 99 2.20e+01 d.58.48.1 84737 1uc8A 280 2.26e+01 unknown_sccs -6718 unknown_sccs -11230 1mo9A 523 2.26e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1w2wA 211 2.27e+01 1qfeA 252 2.29e+01 1qfeA c.1.10.1 29167 1j5vA 351 2.29e+01 c.72.1.1 71585 1pztA 286 2.29e+01 c.68.1.2 -8213 1jg1A 235 2.29e+01 c.66.1.7 66661 1prxA 224 2.30e+01 1prxA c.47.1.10 33076 1sr9A 644 2.30e+01 1cuk 203 2.31e+01 1hjp a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1nmmB 286 2.31e+01 c.68.1.2 80662 1lvmA 229 2.33e+01 b.47.1.3 78243 1i1wA 303 2.33e+01 c.1.8.3 76732 1m4jA 142 2.34e+01 d.109.1.2 78602 1p8xA 344 2.35e+01 d.109.1.1 -10813 d.109.1.1 -10814 d.109.1.1 -10815 1jae 471 2.36e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1i58A 189 2.36e+01 1b3qA d.122.1.3 61773 1v84A 253 2.38e+01 1rgxA 114 2.43e+01 1mp9A 198 2.46e+01 a.74.1.2 -1127 a.74.1.2 -1128 1j6pA 418 2.47e+01 b.92.1.4 77089 c.1.9.9 77090 1h5qA 265 2.48e+01 1cydA c.2.1.2 60643 1kqfB 294 2.51e+01 d.58.1.5 75900 f.23.22.1 75901 1dciA 275 2.53e+01 1dciA c.14.1.3 30918 1p1mA 406 2.55e+01 b.92.1.4 87696 c.1.9.9 87697 1d5rA 324 2.58e+01 1d5rA b.7.1.1 23181 c.45.1.1 32697 1j9yA 385 2.59e+01 1j9yA c.1.8.3 62791 1hvyA 288 2.59e+01 1bkpA d.117.1.1 41049 2pviA 157 2.62e+01 3pviA c.52.1.6 33302 1hrkA 359 2.62e+01 1hrkA c.92.1.1 61228 1k3eA 156 2.74e+01 d.198.1.1 68103 1oz9A 150 2.75e+01 unknown_sccs -10588 1pyaB 228 2.76e+01 1pyaB 1fgxA 288 2.77e+01 1fgxA c.68.1.2 34508 3rabA 169 2.79e+01 1ctqA c.37.1.8 32018 1jzuA 157 2.85e+01 b.60.1.1 84271 1iv3A 152 2.89e+01 d.79.5.1 76828 1ic6A 279 2.90e+01 1gci c.41.1.1 62257 1m6yA 301 2.93e+01 a.60.13.1 78716 c.66.1.23 78717 1pamA 686 2.93e+01 1cxlA b.1.18.2 21846 b.3.1.1 22515 b.71.1.1 27753 c.1.8.1 28740 1o54A 277 2.95e+01 c.66.1.13 -8095 1inp 400 2.95e+01 1inp e.7.1.1 42972 1ta3B 303 2.97e+01 1tz9A 367 2.98e+01 1i05A 180 3.05e+01 1mup b.60.1.1 27130 1fxmA 302 3.08e+01 1taxA 1ac5 483 3.09e+01 1ac5 c.69.1.5 34653 1lucB 324 3.09e+01 1lucA c.1.16.1 29548 5nul 138 3.09e+01 5nul c.23.5.1 31191 1fgyA 127 3.10e+01 1faoA b.55.1.1 26976 1eceA 358 3.10e+01 1eceA c.1.8.3 28813 2fmr 65 3.12e+01 2fmr d.51.1.1 38808 1e4iA 447 3.16e+01 1e70M c.1.8.4 59225 1vjzA 341 3.17e+01 c.1.8.3 -5318 1odzA 386 3.22e+01 c.1.8.3 86889 1i06A 180 3.23e+01 1mup b.60.1.1 27131 1dwkA 156 3.23e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1krhA 338 3.23e+01 b.43.4.2 72891 c.25.1.2 72892 d.15.4.2 72893 1qy1A 174 3.23e+01 b.60.1.1 -4445 1l6sA 323 3.24e+01 c.1.10.3 73627 1ta3A 274 3.28e+01 1v6fA 151 3.32e+01 1nx8A 273 3.33e+01 b.82.2.8 86374 1v33A 366 3.33e+01 unknown_sccs -11384 1elkA 157 3.33e+01 1dvpA a.118.9.2 19217 1d3cA 686 3.34e+01 1cxlA b.1.18.2 21827 b.3.1.1 22496 b.71.1.1 27734 c.1.8.1 28721 1byrA 155 3.35e+01 1byrA d.136.1.1 41450 1jv4A 162 3.35e+01 b.60.1.1 67343 1lzlA 323 3.37e+01 c.69.1.2 78306 1forL 210 3.37e+01 8fabA b.1.1.1 19988 b.1.1.2 21044 1bg0 356 3.37e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 3c2c 112 3.39e+01 1ycc a.3.1.1 15885 1rk8A 165 3.39e+01 d.58.7.1 -10018 1oaoC 729 3.39e+01 e.26.1.3 86746 1b0uA 262 3.41e+01 1b0uA c.37.1.12 32370 1oiaA 95 3.41e+01 d.58.7.1 87051 1vhh 162 3.44e+01 1vhh d.65.1.2 39550 1dcoA 104 3.49e+01 1dcpA d.74.1.1 39680 1dc1A 323 3.49e+01 1dc1A c.52.1.11 33321 3ertA 261 3.52e+01 3erdA a.123.1.1 19292 1atiA 505 3.53e+01 1atiA c.51.1.1 33196 d.104.1.1 40745 1uslA 170 3.54e+01 c.121.1.1 -6682 1s2dA 167 3.57e+01 c.23.14.1 -6469 1mup 166 3.60e+01 1mup b.60.1.1 27133 1jfrA 262 3.62e+01 1jfrA c.69.1.16 34724 1m2tB 263 3.65e+01 b.42.2.1 84762 b.42.2.1 84763 1p1jA 533 3.67e+01 c.2.1.3 87687 d.81.1.3 87688 1ovnA 248 3.76e+01 a.71.1.1 -1096 c.47.1.7 -7477 1ddwA 120 3.77e+01 1evhA b.55.1.4 27001 2ptd 298 3.79e+01 2plc c.1.18.2 29605 1al3 324 3.81e+01 1al3 c.94.1.1 35835 1qgoA 264 3.84e+01 1qgoA c.92.1.2 35596 1b3tA 147 3.84e+01 1b3tA d.58.8.1 39228 1bjx 110 3.87e+01 1bjx c.47.1.2 32774 1giqA 413 3.88e+01 d.166.1.1 76224 d.166.1.1 76225 1kthA 58 3.93e+01 g.8.1.1 68863 2knt 58 3.93e+01 1bpi g.8.1.1 44537 1a0cA 438 3.99e+01 1a0cA c.1.15.3 29529