# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1iujA	106	2.87e-02		unknown_sccs	-9953
1lq9A	112	4.00e-02		d.58.4.3	78129
1edt	271	2.19e-01	2ebn	c.1.8.5	28993
1iw0A	215	4.63e-01		a.132.1.1	83720
1lvmA	229	1.64e+00		b.47.1.3	78243
1pbuA	162	2.26e+00		d.58.46.1	88030
1nu0A	138	3.66e+00		unknown_sccs	-7658
1cnt1	187	3.94e+00	1cnt3		
1nf1A	333	4.31e+00	1nf1A	a.116.1.2	19110
1qysA	106	5.36e+00		unknown_sccs	-13432
1nmeB	92	5.51e+00			
1m55A	197	7.39e+00		d.89.1.3	74469
1bkjA	240	7.62e+00	1bkjA	d.90.1.1	40243
1e44B	96	8.17e+00	1e44B	b.101.1.1	59220
1thfD	253	8.61e+00	1thfD	c.1.2.1	28535
1vh7A	265	8.68e+00		c.1.2.1	-5159
1shbA	104	9.27e+00	1fmk	d.93.1.1	40425
1vkbA	161	9.81e+00			
1k28D	391	1.13e+01		b.106.1.1	68052
				b.106.1.1	68053
1qgvA	142	1.16e+01	1qgvA	c.47.1.8	33056
1shdA	107	1.17e+01	1fmk	d.93.1.1	40440
1b5l	172	1.22e+01	1b5l	a.26.1.3	16900
1azwA	313	1.22e+01	1qtrA	c.69.1.7	34658
1bjx	110	1.26e+01	1bjx	c.47.1.2	32774
1gyfA	62	1.28e+01	1gyfA	d.76.1.1	39749
1lj5A	379	1.30e+01		e.1.1.1	73928
1on0A	158	1.36e+01		d.108.1.1	87095
1o4rA	108	1.38e+01		d.93.1.1	-10624
1bm9A	122	1.38e+01	1bm9A	a.4.5.7	16116
1eceA	358	1.39e+01	1eceA	c.1.8.3	28813
1ckeA	227	1.55e+01	1ckeA	c.37.1.1	31846
1pv9A	348	1.70e+01		c.55.2.1	-7610
				d.127.1.1	-11000
1dqsA	393	1.72e+01	1dqsA	e.22.1.1	43347
1g0cA	364	1.77e+01	7a3hA	c.1.8.3	60165
1pqnA	127	1.86e+01		c.47.1.8	-7479
1who	96	1.89e+01	1who	b.7.3.1	23215
1o8xA	146	1.98e+01		c.47.1.10	86681
1mveA	243	2.28e+01		b.29.1.2	85140
1f8rA	498	2.33e+01	1f8rA	c.3.1.2	30410
				d.16.1.5	37974
1et0A	269	2.44e+01	1et0A	e.17.1.1	43289
1noyA	388	2.49e+01	1clqA	c.55.3.5	33713
1i2kA	269	2.54e+01		e.17.1.1	-11995
1a7cA	379	2.65e+01	1sek	e.1.1.1	42660
1q4rA	112	3.12e+01		d.58.4.4	-9943
1g0hA	252	3.17e+01	1dk4A	e.7.1.1	60171
1e1oA	504	3.33e+01	1lylA	b.40.4.1	25258
				d.104.1.1	40714
1q2yA	140	3.33e+01		d.108.1.1	-10791
1a4iA	301	3.43e+01	1a4iA	c.2.1.7	30278
				c.58.1.2	33926
1fxlA	167	3.53e+01	1b7fA	d.58.7.1	39183
				d.58.7.1	39184
1mkeA	152	3.53e+01		b.55.1.4	79231
1v84A	253	3.77e+01