(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0262 1wfx, Aeropyrum pernix
              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MPSSSQYRRYQDPHHPSIPTPTTLFSQPSLEILGGGVAEELPELALCCDGTVVEGRSNCRCKARA
   2 MPSSSQYRRYQDPHHPSIPTPTTLFSQPSLEILGGGVAEELPELALCCDGTVVEGRSNCRCKARA
   3 --------------------------------------EELPELALCCDGTVVEGRSNCRCKARA
   4 -----------------------------------------PELRTCHGPYRGRECPVCGKPGKI
   5 -----------------------------------------------HGYFRGGSCLQCKRPGRY
   6 -----------------------------------------PELRYCHGPYRGKECPVCGKPGKI
   7 -----------------------------------------------------------------
   8 -----------------------------------------------HGYFRGGSCQQCKRPGRY
   9 ----------------------------------------------------------------R
  10 -----------------------------------------------HGYFRGGSCQQCKRPGRY
  11 -----------------------------------------------------------------
  12 ----------------------------------------------------TESPTHCGVSAVK
  13 -----------------------------------------------------------------
  14 ---------------------------------------------------VNKNRKSRDENAMA
  15 -----------------------------------------------------------------
  16 -----------------------------------------------------------------
  17 -------------------------------------------------GFYRGEKCRCGAEGEL
  18 ----------------------------------------------------NKNRKSRDENAMA
  19 -----------------------------------------------------------------
  20 -----------------------------------------------------------------
  21 ---------------------------------------------------VNKNRKSRDENEMA
  22 -----------------------------------------------------------------
  23 -----------------------------------------------------------------
  24 -----------------------------------------------------------------
  25 -----------------------------------------------------SGRTGGRRRRGN
  26 ------------------------------------------------GYERDNDRRRPQGRGDG
  27 -----------------------------------------------------------------
  28 -----------------------------------------------------------------
  29 -----------------------------------------------------------------
  30 -----------------------------------------------------------------
  31 -----------------------------------------------------------------
  32 -----------------------------------------------------------------
  33 -----------------------------------------------------------------
  34 -----------------------------------------------------------------
  35 -----------------------------------------------------------------
  36 ---------------------------------------------------RQEAAGSRGRRAPR
  37 -----------------------------------------------------------------
  38 -----------------------------------------------------------------
  39 ----------------------------------------------CGKYTEKHTCERCGRRTEE
  40 -----------------------------------------------------------------
  41 ------------------------------------------------DKHSKPRGGKGRGKSGG
  42 -----------------------------------------------SNNSGTPATKSSSKPTKK
  43 --------VLRDNFNPAQPLHTLRPPQPPIMPNSGPSAEKRKE--------GGGKGGGKGGRGRE
  44 -----------------------------------------------------------------
  45 ---------------------------------------------ICKRCGEFEGSCECGK-GEV
  46 -----------------------------------------------------------------
  47 -----------------------------------------------------------------
  48 -----------------------------------------------------------------
  49 -------------------------------------------------GRGGRGPKSGGHGGGH
  50 -----------------------------------------------------------------
  51 -----------------------------------------------------------------
  52 -----------------------------------------------------------------
  53 -----------------------------------------------------------------
  54 ------------------------------ELSSQPKGDLTRDLAIRLRDAWAKRRGTPGDAPLR
  55 -----------------------------------------------------------------
  56 -----------------------------------------------------------------
  57 -----------------------------------------------------------------
  58 -----------------------------------------------------------------
  59 -----------------------------------------------------------------
  60 -----------------------------------------------------------------
  61 -----------------------------------------------------------------
  62 -----------------------------------------------------------------
  63 -----------------------------------------------------------------
  64 -----------------------------------------------------------------
  65 -----------------------------------------------------------------
  66 ---------------------------------------------------VNKNRKSRDENAMA
  67 -----------------------------------------------------KNRKSRDENAMA
  68 -----------------------------------------------------------------


         70        80         90         100       110            120  
         |         |          |           |         |              |  
   1 VLPGGMRVRLSKTLAGILRHH.PGRYGVRLTREGW..ARVSEVVEGLRK.....AGWSWVEEWHI
   2 VLPGGMRVRLSKTLAGILRHH.PGRYGVRLTREGW..ARVSEVVEGLRK.....AGWSWVEEWHI
   3 VLPGGMRVRLSKTLAGILRHH.PGRYGVRLTREGW..ARVSEVVEGLRK.....AGWSWVEEWHI
   4 LMNEREVDEVSRTLAAILRHD.PERYHIRLDSHGY..ARIAGIVTVLRKy....KGMKWITFDHI
   5 LLDDNKEEKLGRFVSGTLRHF.PESAGVTMDRFGW..VNINDFCDVMRK.....RY-SWMRKEYL
   6 MMNEAEINEVSRTLAAVLRHD.PGRYGIRLDSHGY..ARISSLVSMFRKr....KGMRWMTDDHL
   7 ---GDRRFKVSKLMAYILRHS.PWEFGLEPDEEGF..VELADLIRAIKT.....VY-PWVTEEFI
   8 VLDDSREEKLGRFVSGTLRHF.PASAGVKMDEYGW..VDLNAFCDVMKK.....RY-NWMRKEYL
   9 QMKQRELIRISKFLSLVLRHR.PEQIGLSLDQHGW..AEVDELIRCANR.....HGLP-LSRAQL
  10 VLDDGREEKLGRFVSGTLRHF.PASAGVKMDKYGW..IDLNAFCEVMKK.....RY-NWMRKEYL
  11 -------FKVSKLMAYILRHS.PWEFGLEPDEEGF..VSIEELVNAVRK.....VY-PWVTEEYI
  12 ILDGAMRLKISKLLSLALRHS.PSVLGLSLDKGGW..ADVKTALEGLRK.....AGIR-ADYEAL
  13 ---DSRLVKISKYLSKYLRHT.PDAIGIKLAPGGW..VAVDELITACAK.....NKFP-ITRQEL
  14 KYNEKELADTSKFLSFVLRHK.PEAIGIVLDREGW..ADINKLILCAQK.....AGKR-LTRALL
  15 ------QDDHSRFLSLVLRHQ.PETIGLQLDDQGW..ADIGELLARLAA.....KGRN-LGRKQL
  16 -------VKLGRFISLILRHK.PETINLKLDKNGW..ANTKELIEKISK.....SGRE-IDFEIL
  17 ILPKEKVEKLGKFISGVLRHF.PDKFGLNMDENGW..VNLESLARVVKR.....RY-KWANIWLI
  18 KYNEKELADTSKFLSFVLRHK.PEAIGIVLDREGW..ADINKLILCAQK.....AGKR-LTRALL
  19 --------KLGRFISLILRHK.PETIDLKLDKNGW..ANTKELIEKISK.....SGRE-IDFEIL
  20 ----ERTVKVSKYLSKHLRHQ.PERIGLTPDEGGW..VEIDALVAAAAA.....HGFP-FTRQEL
  21 KYNEKELADTSKFLSFVLRHK.PEAIGIVLDREGW..ADIDKLILCAQK.....AGKR-LTRALL
  22 --------KISKYISLILRHK.PEEIGLKLDEHGY..LGVLDLIEGLNK.....SYKG-FSMDDL
  23 ------RFKVSKLMAYILRHD.PWSFNLQPDEEGF..VDLEEFVNAIRR.....VY-PWVTKEFI
  24 ---KKQRDEISKLLSYVLRHA.PESMGLTLDRDGW..CEVDELVGKANA.....NGHS-FDRQAL
  25 RGDEDGDVRLSKSLSYALRHG.ANQMGLQIGSDGF..VFVEELLAHPQF.....RS---YSLEDV
  26 GGGKDRIDALGRLLTRILRHM.ATELRLNMRGDGF..VKVEDLLNLNLKtsan.IQLKSHTIDEI
  27 ---------TSKFLSYVLRHA.PESIGLVLDSQGW..ADVADLLAKANA.....SGTP-LDEAGL
  28 -----DATRISRTLSYLLRHA.PQTIGLQLDPEGW..ADIDELIAGIAR.....QGLH-LDRATL
  29 --------------AYILRHS.PWEFGLEPDEEGF..VELADLIRAIKT.....VY-PWVTEEFI
  30 ----KTLDDTSKFLSYVLRHQ.PEAIGLTLDGEGW..ADIDALIAGAAR.....DGRA-LDRMLL
  31 ----KTLDDTSKFLSYVLRHQ.PEAIGLTLDGEGW..ADIDALIAGAAR.....DGRA-LDRMLL
  32 -----QLIKISRFLSYHLRHA.PEKLGLELEPGGW..ISTEKLLKACQN.....TKFT-LTFSDL
  33 ---EREVDEVSRTLAAILRHD.PERYHIRLDSHGY..ARIAGIVTVLRKy....KGMKWITFDHI
  34 --------KLSKEVAYALRHA.PWEYGLELDAEGW..VDINQLLSSLHEc....EKWKKVSEHDL
  35 ----KQLVSTSKFLSLVLRHQ.PGVIGMTLDEQGW..LEIDGLIANANT.....RGKK-LTLELI
  36 PREQDRDVQLSKALSYALRHG.ALKLGLPMGADGF..VPLGTLLQLPQF.....RG---FSAEDV
  37 --NEKELADTSKFLSFVLRHK.PEAIGIVLDREGW..ADIDKLILCAQK.....AGKR-LTRALL
  38 -------TDISKFLSYILRHQ.PEAIGLSLDKEGW..VVISDLILCAAE.....EGYI-FDNNLI
  39 FLDGRRRLALSKLLSGILRHF.PEEVKVKLDDEGFtdCDVHELAERIKKywknrEYYRWLTGEHI
  40 -----FYTNLSKEVSYALRHA.QWKYELELDENGW..VSVEQLLHALHQs....IEWRDVKIEDL
  41 GGGHGREVQVSKALSRLLRHQ.AANAGIQLDDEGF..ARLDTVLAWNPL.....RSLK-VTFDDV
  42 IRPRNDLVHYSKALSKVLRHT.AKANGLQIREDGY..IEVDSILKLPQF.....RG---MGMELL
  43 RKPPSREVTVSKALSLLLRHA.AEREGLKIDSQGY..ANVADVLAWRKL.....KSLK-VTFPEI
  44 -------DALGRILTRILRHM.ATELRLNMRGDGF..VKVEDLLNLNLKtcan.IQLNSHTIDEI
  45 LLKSEDRKKVSKFLSGLLRHF.GRDFGVRLDEDGW..AELRDVLKILSE.....RY--GVGRKHV
  46 ----KRDIAISKSLSYLLRHG.AVKEKLNIDQTGY..ININELLNHNRL.....KTNK-VTLDDI
  47 ----KEQIRISKFLSLVLRHQ.PELIGLQLNEQGW..AHIETLLEKSAA.....YGVS-FDKQTL
  48 ------NTQLSKKLSWLLRHG.AKTEGITIRADGF..VSVPDLQKHPRY.....LC---FTLEKL
  49 RKGGGRDVDLSRALSRLLRHQ.AASAGITLDAEGY..APLDKVLAWGPI.....RSLK-PTFPEI
  50 -----RDVLISKALSYLLRHG.AEKEKLSIDDQGY..VKISDVLSHQRL.....KSLK-TTRDDI
  51 --KDKRDVQLSKALSYLLRHT.AVKEKLTIDSNGY..TPLKELLSHNRL.....KTHK-CTVDDI
  52 ----RRDVLISKSLSYLLRHG.ALKEQLPIDSDGY..VPVSAVLAHNRL.....KSHR-CSFSDL
  53 --------EYSRKLSYILRHG.ATKEKLPIREDGY..LSVGVLLNRAGI.....KG-K-WNLEDT
  54 ELKDGRRRRISRSLSYHLRHG.RE---LTQNPQGW..VPIDSLVRALDP.....KL--RVSADEL
  55 ----KRDIQISKALSYLLRHG.AVKENLPFDVNGY..IEVERVLNHQRL.....KSHK-CTLEDL
  56 ----NAETQISKSMCYLLRHD.KN---FVKRSDGF..VSIDTLAEKLN-.....-----IDKQRI
  57 ---------------------.---------ADGF..VPLGTLLQLPQF.....RG---FSAEDV
  58 ---------------------.---------ADGF..VPLQALLQLPQF.....HS---FSIEDV
  59 ---------------------.-----------GF..VPLQALLQLPQF.....HS---FSIEDV
  60 ---EDPDVRNSKTLAYILRHG.AEKEGLYIRSDGF..IKLADVLARPKL.....KG---VDEPTI
  61 ------MFTISKKMSYLLRHD.PQ--NLNMDIEGF..VNVQDMLKKLE-.....-----ISLQML
  62 ---------------------.-------------..------CDIMDR.....RY-KWATRERL
  63 ---------ISKKLTWLLRHGdPAKTGLNMRNDGY..VEVNEILKQTC-.....-----ISLEKL
  64 ---------------------.-------------..------------.....-----------
  65 ---------------------.-------------..------------.....-----------
  66 KYNEKELADTSKFLSFVLRHK.PEAIGIVLDREGW..ANIDKLILCAQK.....AGKR-LTRALL
  67 KYNEKELADTSKFLSFVLRHK.PEAIGIVLDREGW..ANIDKLILCAQK.....AGKR-LTRALL
  68 ---------------------.-------------..------------.....-----------


           130            140            150                    160    
            |              |              |                      |    
   1 VGVALHDPKGRYELRNG.....E.....IRARYGHSIP...V.....NVEPLP.....GEPPPIL
   2 VGVALHDPKGRYELRNG.....E.....IRARYGHSIP...V.....NVEPLP.....GEPPPIL
   3 VGVALHDPKGRYELRNG.....E.....IRARYGHSIP...V.....NVEPLP.....GEPPPIL
   4 LSLAETDPKGRYQVSGV.....L.....IRAMYGHTIP...V.....DLSDLPe....DNIPDVL
   5 YALVESDEKGRYEIRNS.....R.....IRARYGHSVN...I.....DLDYRE.....SDSP-YL
   6 VYLAETDPRKRYQISGV.....L.....IRAVYGHTID...V.....DLTDLPt....DGIPDTL
   7 KEIVEKDSKGRYEIRGS.....K.....IRARYGHSYP...V.....VLKHEE.....DTESKVL
   8 YALVESDEKGRYQIRGF.....M.....IRARYGHSVN...I.....ELDYEE.....SDAP-YV
   9 EQVVAENDKQRFAFSADgr...R.....IRANQGHSLP...V.....DLQLTP.....AQPPPVL
  10 YALVESDEKGRYQISGP.....M.....IRARYGHSVN...V.....DLDYDE.....SDTP-YV
  11 REIVERDEKGRYEIRGN.....K.....IRARYGHSYP...V.....ILRHEE.....DKESKVL
  12 YAVVALDEKGRFELKDG.....K.....IRARYGHTID...V.....EVEYEA.....DSESKVL
  13 EAVVESSEKQRFSFDSTgt...L.....IRANQGHSVE...V.....DLQLEP.....VVPPDEL
  14 DTVVATSDKKRFSYSSDgr...C.....IRAVQGHSTSq..V.....AISFAE.....KTPPQFL
  15 EKIVLDNDKQRFAISEDgl...R.....IRANQGHSIK...I.....DLGLAA.....CEPPDRL
  16 ERIVNENNKKRYSFNEDkt...K.....IRAVQGHSIE...V.....NLELKE.....VVPPAIL
  17 KALVYSDEKQRYELKGD.....K.....IRARYGHSID...V.....KLSDFP.....EAKEDVL
  18 DTVVATSDKKRFSYSSDgr...C.....IRAVQGHSTSq..V.....AISFAE.....KTPPQFL
  19 ERIVNENNKKRYSFNEDkt...K.....IRAVQGHSID...V.....NLELKE.....IVPPAIL
  20 DHVVATNDKRRFAVEGT.....R.....IRASQGHSIA...V.....DLRLPV.....ATPPPYL
  21 DTVVATSDKKRFSYSSDgr...C.....IRAVQGHSTSq..V.....AISFAE.....KTPPQFL
  22 ERIVREDSKGRYSFNEDks...K.....IRANQGHSIK...V.....DLGLEA.....IKPPKVL
  23 LDIVERDEKERYEVKEG.....K.....IRARYGHSYP...V.....ILDHKE.....DKESKTL
  24 EEVVETNEKKRFTLSEDgq...R.....IRAAQGHSTEq..V.....QVQHIE.....KEPPAWL
  25 ERVVNTNDKQRFKLRSHre6clQ.....IRASQGHSIK...Vi....DLELKPvlagsPECPAEA
  26 REAVRRDNKQRFSLIDEngel.L.....IRANQGHSIT...Tve6klLKPILS.....PEEAPVC
  27 RAVVAESDKKRFTLSEDgr...R.....IRAAQGHSVK...V.....DLGQPP.....VEPPPQL
  28 ETVCATNDKQRFALSDDgr...R.....IRAVQGHSTP...Vv....QRRYPA.....AQPPERL
  29 KEIVEKDSKGRYEIRGS.....K.....IRARYGHSYP...V.....VLKHEE.....DTESKVL
  30 GAVVENNDKKRFALSADgq...R.....IRAVQGHSHAa..V.....AIAYAP.....AVPPAVL
  31 GAVVENNDKKRFALSADgq...R.....IRAVQGHSHAa..V.....AIAYAP.....AVPPAVL
  32 ETVVKDNDKQRFSFNEAkt...K.....IRANQGHSVN...I.....DLQLEP.....LIPPVIL
  33 LSLAETDPKGRYQVSGV.....L.....IRAMYGHTIP...V.....DLSDLPe....DNIPDVL
  34 HVMIEKSDKKRYEISNG.....K.....IRALYGHSIP...Q.....RIIKEQ.....KCPPEVL
  35 HEVVATNDKKRFVLSDDgl...R.....IRASQGHSVAg..V.....DLNLTE.....ANPPATL
  36 QRVVDTNRKQRFALQLGdp6glL.....IRANQGHSLQ...VpklelMPLETP.....QALPPML
  37 DTVVATSDKKRFSYSSDgr...C.....IRAVQGHSTSq..V.....AISFAE.....KTPPQFL
  38 HSIVNNSDKKRFTISDDgl...R.....IRAAQGHSTQq..V.....DIRYEA.....KIPPEFL
  39 IAVVETCPKGRFEIDEHg....R.....IRARYGHSRRls.V.....RPTLPE.....AENVKEL
  40 KIMIEKSEKKRHELKEN.....K.....IRALYGHSIP...M.....KIVKEE.....GVPPEFL
  41 QTAVSTDGKQRFTLKPNp17dyL.....IRANQGHSIK...Les7ltPVTVEA.....GNVPNRV
  42 LSIVKGNDKKRFTMEEVegvl.Y.....IRANQGHSIK...Avqvp.MARIDN.....ASSIPKV
  43 ISAVETSDKKRFALLYQ.....Pp51ylIRATQGHSIK...Tv10erLTLDNP.....DKLPETV
  44 REAVTRDNKKRFSLIDEdgel.L.....IRANQGHSIT...Tve6klLKPILS.....PEEAPVC
  45 ELIVKFDPKGRFELKNG.....R.....IRAKYGHSVE...V.....RTDWSEg....GEIPEKL
  46 RRIVGNNDKKRFSIVEKegei.M.....ICANQGHSIK...TvndsnLIQLSK.....DTIPEEI
  47 KYLVATNSKKRFAFSPDae...Y.....VRASQGHSVD...I.....ELGYKN.....QKPPEIL
  48 KEIAAADAKQRYTLRWNpe6vhE.....IRANQGHSLA...Vle7ggLENITH.....VSQVPLA
  49 LKAVKESDKQRFAIKLAp17dwL.....IRANQGHSIK...Le30teGEDGGT.....IPIPETV
  50 NRIVQENDKKRFTIKDD.....M.....ICANQGHSLK...Avk6nlTPMTVD.....ELNQLRI
  51 HRIVKENDKQRFHIKTLgadeeW.....ICATQGHSIK...Siq8vlVPITEA.....SQLPQEL
  52 QRIVENNEKKRFHMRPGpdgqeY.....ICATQGHTIE...Qvl8vlTQLIDP.....GELPAQL
  53 KRVVRDNDKQRYKLIFEp18gyW.....IRANQGHTIN...TkvemkALKTPE.....DFPTLEI
  54 ISVARAVSEERFEVRGD.....L.....VRARYGHSRP...T.....AIEYEI.....RAPEGRL
  55 HRVVDTNDKKRFNIKLSdd6teL.....ICAVQGHSID...Rik8vlEVIDTA.....EKLPKNI
  56 TEIAHKDSKNRYEINNS.....M.....IRAVQGHSNP...Hvif..QMEKVN.....IDYDGIA
  57 QRVVDTNRKQRFALQLGdp6glL.....IRANQGHSLQ...VpklelMPLETP.....QALPPML
  58 QLVVNTNEKQRFTLQPGep6glL.....IRANQGHSLQ...VpelelTPLETP.....QALPLTL
  59 QLVVDTNEKQRFTLQPGep6gpL.....IRANQGHSLQ...Vg11elMPLETP.....QALPSTL
  60 LHLVQTNAKKRFELFWG.....Yd131fIRATQGHSIQ...Les9qvKDDEEG.....KRKVGLM
  61 NKIVDTDNKQRYEIVND.....K.....IRAVQGHSIKnvnV.....SMPKVE.....ISYNGNA
  62 ISLIESDLKTRYEIKGS.....K.....IRARYGHSVN...V.....ELDYLE.....TELP-YL
  63 HYIVENDPKGRFRIIDEngkn.L.....IRANQGHSLS...Fi10rfEIDNNS.....EFIQRII
  64 -----------------.....-.....----------...V.....DLQLQP.....QLPPPIL
  65 -----------------.....-.....----------...-.....----AP.....AVPPAVL
  66 DTVVATSDK--------.....-.....----------...-.....------.....-------
  67 DTVVATSDK--------.....-.....----------...-.....------.....-------
  68 -----------------.....-.....----------...-.....------.....-------


         170       180         190               200       210        2
          |         |           |                 |         |         
   1 YHGTTEEALPLIMERG..IMRGRRLKVHLTS.....SL...EDAVSTGRRHGNLVAVLLVDV.EC
   2 YHGTTEEALPLIMERG..IMRGRRLKVHLTS.....SL...EDAVSTGRRHGNLVAVLLVDV.EC
   3 YHGTTEEALPLIMERG..IMRGRRLKVHLTS.....SL...EDAVSTGRRHGNLVAVLLVDV.EC
   4 YYQSSAAEAPLVKEAG..IYPSDKTWVHLSG.....TY...RRSYVSGLYHIDDPFILRIDA.RS
   5 YYGASPEEVDVLLENG..IFPIKQRYVHLST.....SY...EKAVEVALIHTENPVILQIDA.FK
   6 YYQSSTAEAPLVKEAG..IYPSDKSWIHLSG.....TY...RKSFVSGLYHIDDPLVLAVNA.RS
   7 YHGTIRENLKGILKEG..IKPMKRQYVHLSL.....SY...EDAYYTGRRHGKDVVVLLIDA.EC
   8 YYGASPEEVDVLLENG..IFPIKQRYVHLST.....SY...EKAAEVALIHTESPVILQVDA.FR
   9 YHGTAERFVESIKRDG..LLPGKRQYVHLSQ.....DE...TTALTVGQRHGR-PVVLTVHA.AA
  10 YYGASPEEVDVLLENG..IFPIKQRYVHLST.....TY...EKAAEVALIHTESPVILQVDA.FR
  11 YHGTVRRNLKGIMREG..IKPMKRQYVHLSI.....NY...EDAYNTGRRHGEDVVVLIIDA.EC
  12 YHGTSRHLLPSIMAQG..LLPMRRRYVHLSP.....DF...ATACQNARRRPL-PVVIEIDA.EC
  13 YHGTGHKSVDSIMETG..LCKMSRHHVHLSK.....DI...ATAQTVGARHGK-PVVFAISA.AA
  14 YHGTASRFLDEIKKQG..LIAGDRHYVHLSA.....DE...ATARKVGARHGS-PVVLTVKA.QE
  15 YHGTASRFLDAILAEG..LRPGQRQHVHLSA.....DG...QTARKVGARHGK-PVVLEIDA.RA
  16 YHGTAFKTLESIKKEG..IKKMSRQHVHLSA.....DI...ETAKNVATRHSGKYIILEIDT.EA
  17 YYGTSEEEAHRMLEIG..IKPVNQRYVHLST.....TI...EKSKEVASIRTDTPIVLEIDA.KK
  18 YHGTASRFLDEIKKQG..LIAGDRHYVHLSA.....DE...ATARKVGARHGS-PVVLTVKA.QE
  19 YHGTAFKNLESIKKEG..IIKMSRQYVHLSA.....DV...ETAKNVATRHSGKYIILEIDT.EA
  20 YHGTVARHLEAIRAEG..LRPMNRHDVHLSP.....DR...ETATRVGARRGR-PVVLPVDA.AT
  21 YHGTASRFLDEIKKQG..LIAGERHYVHLSA.....DE...ATARKVGARHGS-PVILTVKA.QE
  22 YHGTGRKYIESILKNG..LIKKERQYVHLSK.....DI...ETASIVGKRHGD-LVILEVDS.ES
  23 YHGTIRENLEGIMREG..IKPMKRQFVHLSL.....NY...EDAYNTGRRHGSNVVVLMIDA.DC
  24 YHGTASRFMASIETQG..LIAGSRHHVHLTE.....DP...ETALSVGKRYGQ-PVLLAVDA.KG
  25 VHGSYLRNWGSIKQQG..LSRMNRTHIHLAP.....GLp..GEDGVISGMRKDCDLAVFVDV.PK
  26 VHGTYRKNLESILASG..LKRMNRMHVHFSC.....GLp..TDGEVISGMRRNVNVIIFLDI.KK
  27 FHGTATRFLEPILREG..LRPGERQQVHLSA.....DR...TTALAVGQRHGK-PVVLIVDA.GQ
  28 YHGTATRFLDSIRAQG..LKPGARHHVHLSP.....DI...RTALAVGTRYGV-PVILEVDA.QR
  29 YHGTIRENLKGILKEG..IKPMKRQYVHLSL.....SY...EDAYYTGRRHGKDVVVLLIDA.EC
  30 YHGTASRFLDSIRERG..LVPGSRHHVHLSA.....RR...ATALEVGRRYGS-PVLLEIDA.RD
  31 YHGTASRFLDSIRERG..LVPGSRHHVHLSA.....RR...ATALEVGRRYGS-PVLLEIDA.RD
  32 YHGTHQKVVKTILKEG..LKKMARHHVHLSE.....RK...ETALKVGSRRGK-PVIFVIKA.QQ
  33 YYQSSAAEAPLVKEAG..IYPSDKTWVHLSG.....TY...RRSYVSGLYHIDDPFILRIDA.RS
  34 YHGTARRFVKSIKEKG..LQPQGRQYVHLSA.....DV...ETALQVGKRRDIKPVLLIVNA.LE
  35 YHGTVDAFLPRIREQG..LQKRSRNHVHLSA.....DE...ATATNVGSRRGK-PKLLLIAA.QR
  36 VHGTFWKHWPSILLKG..LSCQGRTHIHLAP.....GLp..GDPGIISGMRSRCEIAVFIDG.PL
  37 YHGTASRFLDEIKKQG..LIAGERHYVHLSA.....DE...ATARKVGARHGS-PVILTVKA.QE
  38 YHGTATRFIISIRVQG..LNAKDRQYVHLSA.....DE...ETAIQVGSRHGK-PIVLRIKA.LT
  39 YHGTARENLESILQHG..IKPMGRRAVHLTD.....DE...REALITALRHTRNPVILVVDA.ER
  40 YHGTSPRFLNSIESNG..LSPMSRQYVHLSE.....DI...ITAELVGKRKDKHPIILEVNT.GK
  41 LHGSFFYFWSAIVETGg.LKPMNRNHVHCSA.....GT...PEEGILSGMRRDAELIIEIDM.EE
  42 VHGTKKELWPVISKQG..LSRMKRNHIHCAT.....GLy..GDPGVISGIRKSCTLYIYIDS.AK
  43 VHGTYHSTWPLILESGg.VKCMGRNHAHFATg28sgAG...SHGMVISGMRADAAVLIYIDI.RR
  44 VHGTYRKNLESILASG..LKRMNRMHVHFSC.....GLp..TDGEVISGVRRNVNVIIFLHI.KK
  45 YHATSPENLNSILKTG..LLPMRRREVHMCS.....SP...QEAIEVGKRHSSNPVLLEIDA.KG
  46 YHGTYKNKLPAIFNSGg.LSKMNRNHIHFAS.....SI...SD---VSGIRNSSNVLIYLNI.EK
  47 YHGTAEKFMQSILETG..LEKCRRQHVHLSS.....TI...ETAIHVGQRHGK-PVVFTVLA.QQ
  48 VHGTYYRHWGAIRSQG..LSRMNRNHVHFAC.....SD...ETNSTLSGFRSDCQILIYLNV.EK
  49 VHGTYFAFWDKIIQSGg.LKPMGRNHVHFST.....GLpedTERGVISGMRSDAEVLVFVDV.ER
  50 YHGTYRTKLPLIKSSGg.LSKMNRNHIHFTC.....--...EQYSTCSGIRYNANVLIYINA.SK
  51 IHGTNLQSVIKIIESGa.ISPMSRNHVHLSP.....GMl..HAKGVISGMRSSSNVYIFIDChSP
  52 IHGTNLRNAVLILDSGc.IKRMQRNHVHLSH.....GVt..GKDCVISGMRLSSTVHIYLNT.EG
  53 FHATSKQVLPIVLKEG..LSKMKRQHIHLAT.....DLv..TEGGSVAGKRLNREVFIYINV.PK
  54 YHCTPTTALHNIFERGegLRPMTRQWVHLTT.....DR...AAALSAGRRHGPCTLLCVPDP.SA
  55 IHGTSVRNAIQILKSGs.IKRMNRNHIHLSI.....GIte.KDKEVISGMRKSSRVHIYILS.EP
  56 VHGTFKKHLNSIMLHG..LKRMSRNHIHLGT.....SK...KNA------RKNAEVFVYIDI.QK
  57 VHGTFWKHWPSILLKG..LSCQGRTHIHLAP.....GLp..GDPGIISGMRSHCEIAVFIDG.PL
  58 VHGTFWKHWPSILLKG..LSRQGRTHIHLAS.....GLp..GDPGVISGIRPNCEVAVFIDG.PL
  59 VHGTFWKHWPSILLNG..LSRQGRTHIHLAS.....GLp..GDSGVISGIRPNCEVAVFING.AL
  60 VHGTRWELWDTLKEQG..LQKMTRQHIHLAP.....GF...SGPIT---PRPNSTLYIYLDL.SK
  61 IHGTFSKNLPFILTEG..IKRFTRKHIHMAT.....DMk..-------FVRKNTNVFIYVNI.PK
  62 YYGVSQEEVDMLLDTG..IAPMRQRYVHLST.....SY...GKAIESASVHTENPVVLEVDV.DE
  63 IHGTYLDKWKNIKING..LSRMSRSHIHFVSa26vrEM...CNYKCTAGIRPNCEVLVFIDV.VN
  64 YHGTGEKSVPAILKSG..LLKMSRHHVHLSK.....DI...ETARTVGIRHGK-PVIFSVDA.MV
  65 YHGTASRFLDSIRERG..LVPGSRHHVHLSA.....RR...ATALEVGRRYGS-PVLLEIDA.RD
  66 ----------------..-------------.....--...---------------------.--
  67 ----------------..-------------.....--...---------------------.--
  68 ----------AIRREG..LRPVHRHHVSLSA.....DT...GAAQQVGARRGR-AVALVVAT.GA


      20            230            240       250      
      |              |              |         |      
   1 LRRR.....GLKVERMSKTVYTVDW.....VPPECIAEVRRESLGRSL
   2 LRRR.....GLKVERMSKTVYTVDW.....VPPECIAEVRRESLGRSL
   3 LRRR.....GLKVERMSKTVYTVDW.....VPPECIAEVRRESLGRSL
   4 MIDS.....GHDIYRSSDDIYLTRE.....IPPEYIQDAEPEE-----
   5 AQED.....GISLKLATDDIVLAER.....IPPEYLFVV---------
   6 MIEN.....GIDIFRSNDDIYLTKQ.....VPPEYITIAEK-------
   7 LRRK.....GYKILKAGKRVRIVKH.....VPVECISEI---------
   8 AQED.....GISLKLATDYIVLAEK.....IPPEYLYVI---------
   9 MTAA.....GYVFYVSANGVWLTKQ.....VPARFI------------
  10 AQED.....GISLKLATDYIVLAEK.....IPPDYLFV----------
  11 LRNK.....GYKILKAGKKVRIVKH.....VPVDCI------------
  12 LRAR.....GYVVYAASGKVRLAKH.....VPPECLKKVVD-------
  13 MHQA.....GYIFYCSDNGVWLVDR.....VPPEYLQ-----------
  14 MAKR.....GIPFWQAENGVWLTST.....VAVEFL------------
  15 MRQA.....GLAFYRSDNGVWLIDG.....VPPVFIR-----------
  16 MLKE.....NYKFYLSENKVWLTDF.....VPSKFI------------
  17 ARED.....GIRIIKANDLIALAEE.....IPAKYIK-----------
  18 MAKR.....GIPFWQAENGVWLTST.....VAVEFL------------
  19 MLKE.....NYKFYLSENKVWLTDF.....VPSRFI------------
  20 MHRD.....GHVFHVSANGVWLTQH.....VPSRYL------------
  21 MAKR.....GLPFWQAENGVWLTST.....VAVEFL------------
  22 MFKD.....GIKFYLSKNNVWLCDY.....VKVEYIKE----------
  23 LRKK.....GFKILKAGKKVRIVKY.....VPVDCI------------
  24 MFEA.....GVQFFQADNGVWLVEA.....VPIEWLTKV---------
  25 ALAD.....GLEFFWSENGVLLTAGntegmLPPKYFSRALRLKPTRSL
  26 ALED.....GIAFYISDNKVILTEGidgv.LPVDYFQKIESWPDRQSI
  27 MFAD.....GCRFYLADNGVWLTDA.....VPFSYLT-----------
  28 MHRQ.....GHTFFVAENGVWLTDT.....VPAEFLKE----------
  29 LRRK.....GYKILKAGKRVRIVKH.....VPVECISEI---------
  30 MHLA.....GHLFHQAENGVWLTER.....VPVRFIR-----------
  31 MHLA.....GHLFHQAENGVWLTER.....VPVRFIR-----------
  32 MSED.....GCIFYCSDNGVWLVDY.....IDPKYL------------
  33 MIDS.....GHDIYRSSDDIYLTRE.....IPPEYIQDAEPEE-----
  34 AWSE.....GIKFYLGNDKVWLADA.....IPSKYI------------
  35 MHQD.....GHIFYLSENEVWLVDS.....VPPTYL------------
  36 ALAD.....GIPFFRSANGVILTPGntdgfLLPKYFKEALQLRP----
  37 MAKR.....GLPFWQAENGVWLTST.....VAVEFL------------
  38 MYEQ.....GFYFYQAANGVWLSNS.....IPYQFI------------
  39 LRRH.....GLVPRKAGKNVYVVEGt....VPPDCITRVIR-------
  40 AREE.....GVKFYLGNEKVWLADE.....IPSEFI------------
  41 SLKD.....GIKWWLSDNGVLLTEGdeqgiLSTKYFKLVTGRNIDV--
  42 AMQD.....GVEFYRSENGVILTEGvngl.LSSKYFSRVET-------
  43 ALAG.....GCPFWRSENGVILSEGm15gvIPVEYFDVVVERR-----
  44 ALED.....GIAFYISDNKVILTQGivgv.LPVDYFQKIESWPDRQSI
  45 LMQD.....GIEVRR-KGKVYTVDF.....VPPKFIR-----------
  46 CLQS.....GIVFYRSSNNVILTSGdanglIGLEFFGKVVDAKNGTP-
  47 MYAN.....DFSFYLSDNGVWLTDH.....VPVIYL------------
  48 VLAD.....GIPIYRSSNNVLLCPGiegf.IHSSYFQRVVDKKTGQPL
  49 SIRDa12gkGIKWWMSDNGVVLTEGdkdglVPLKYFKEVRGRRQGVG-
  50 CIEH.....GIVFYKSLNNVILTSGdkdgkLSWEFIDRIVGL------
  51 LFFQ.....TLKMFRSLNNVYLSSS.....IPVELIQKV---------
  52 IL-D.....HLRLYKSRNDVYLTPSd....IPVSMFKKV---------
  53 ALEA.....GIEFFLSENGVVLTEGkdgk.ISREFFSKILD-------
  54 ----.....-LECRHAGGATWLVAQ.....VPPSALTV----------
  55 KILE.....HLKLYRSMNSVILTPD.....------------------
  56 CLKN.....GILFHFSSNGYILTTGidgt.IPSKYISK----------
  57 ALAD.....GIPFFRSANGVILTPGntdgfLLPKYFKEALQLRP----
  58 ALTD.....GIPFFCSANGVILTPGnaegfLLPKYFKEALQLRP----
  59 ALTD.....GIPFFCSVNGVILTPGnadgfLLPKYFKEALQLRP----
  60 LVAA.....GIPVYVSANGVVLTPGs11agVGKEFWRRAVRRKE----
  61 CIED.....GIICYYSANN------.....------------------
  62 AQNN.....GLHFMLVNDDIVLTDG.....VPPEYLSVV---------
  63 CVTNsa...EYKFYLSDNGVVLTRGnsqgiID----------------
  64 MYQS.....GFTFYCSDNGVYLVDH.....VPPEYL------------
  65 MHLA.....GHLFHQAENGVWLTER.....VPVRFIR-----------
  66 ----.....----------------.....------------------
  67 ----.....----------------.....------------------
  68 LREA.....GYDFFRSDNGVWLTDT.....VPPEYLI-----------