# List of top-scoring protein chains for T0262.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1top 162 1.00e-01 1ncx a.39.1.5 17223 4tnc 162 1.05e-01 1ncx a.39.1.5 17228 5tnc 162 1.32e-01 1ncx a.39.1.5 17246 1la0A 161 2.26e-01 a.39.1.5 77864 1tcf 159 3.22e-01 1ncx a.39.1.5 17250 1fi5A 81 4.12e-01 1ncx a.39.1.5 17252 1a2xA 159 4.35e-01 1ncx a.39.1.5 17251 1aj4 161 4.53e-01 1ncx a.39.1.5 17244 1tnw 162 5.16e-01 1ncx a.39.1.5 17235 1dtlA 161 5.31e-01 1ncx a.39.1.5 17229 3ctn 76 5.43e-01 1ncx a.39.1.5 17241 1ozsA 73 5.91e-01 a.39.1.5 -828 1ih0A 71 6.05e-01 a.39.1.5 66140 1jc2A 76 6.71e-01 a.39.1.5 62862 1f6yA 262 1.87e+00 1f6yA c.1.21.2 29673 1s29A 92 1.89e+00 unknown_sccs -315 1s7aA 103 2.17e+00 unknown_sccs -313 1j1dC 133 2.35e+00 h.1.25.2 83965 1j1eC 180 3.14e+00 h.1.25.2 83971 1tplA 456 3.85e+00 1ax4A c.67.1.2 34387 1v25A 541 4.17e+00 1ki0A 253 5.17e+00 g.14.1.1 72493 g.14.1.1 72494 g.14.1.1 72495 1lf9B 674 5.38e+00 a.102.1.5 77924 b.30.5.5 77925 1lf6A 684 5.42e+00 a.102.1.5 77918 b.30.5.5 77919 1snzA 344 6.36e+00 b.30.5.4 -3496 1viaA 175 6.44e+00 c.37.1.2 -7021 2fcr 173 6.51e+00 1rcf c.23.5.1 31151 1on1A 142 6.66e+00 a.4.5.24 87099 a.76.1.1 87100 1on2A 142 6.69e+00 a.4.5.24 87103 a.76.1.1 87104 1ctaA 36 6.87e+00 1ctdA a.39.1.5 17232 1n25A 368 7.35e+00 c.37.1.20 85264 1aerB 201 7.75e+00 1aerA d.166.1.1 42250 1nmeA 146 7.80e+00 c.17.1.1 85874 1rhjA 147 7.81e+00 c.17.1.1 -7916 1gs0A 351 8.31e+00 a.41.1.1 76323 d.166.1.2 76324 1c7gA 456 8.50e+00 c.67.1.2 -8153 1v7mH 217 8.70e+00 b.1.1.1 -2227 b.1.1.2 -2530 1aerA 211 8.91e+00 1aerA d.166.1.1 42249 1nf2A 268 9.43e+00 c.108.1.10 -6842 1i3oA 175 9.56e+00 1pauA c.17.1.1 61603 1dmaA 214 9.79e+00 1aerA d.166.1.1 42251 1kl9A 182 9.90e+00 b.40.4.5 72681 1k9uA 78 9.91e+00 a.39.1.10 84348 1nuuA 252 1.01e+01 c.26.1.3 86209 1e1gA 104 1.06e+01 1b10A d.6.1.1 37310 1efyA 350 1.06e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1a26 361 1.07e+01 1a26 a.41.1.1 17412 d.166.1.2 42274 1hjmA 104 1.09e+01 d.6.1.1 83489 1e1uA 104 1.09e+01 1b10A d.6.1.1 37308 1dwyA 112 1.10e+01 1b10A d.6.1.1 37321 1i4mA 108 1.10e+01 d.6.1.1 66025 1e1pA 104 1.12e+01 1b10A d.6.1.1 37307 1qm2A 112 1.12e+01 1b10A d.6.1.1 37315 1s6iA 188 1.12e+01 1qzfA 521 1.16e+01 c.71.1.1 -8373 d.117.1.1 -10945 1nmsA 249 1.20e+01 c.17.1.1 85879 1qx3A 257 1.21e+01 c.17.1.1 -7914 1ggzA 148 1.24e+01 a.39.1.5 70176 1fkcA 142 1.25e+01 1b10A d.6.1.1 37319 1uk0A 350 1.27e+01 a.41.1.1 -902 d.166.1.2 -11584 1h0lA 112 1.28e+01 d.6.1.1 76441 1qm0A 143 1.28e+01 1b10A d.6.1.1 37317 1cp3A 277 1.35e+01 1pauA c.17.1.1 30992 1sdmA 369 1.36e+01 1nhkL 144 1.40e+01 1npk d.58.6.1 39142 1kxqE 120 1.50e+01 b.1.1.1 73171 1s1iF 162 1.63e+01 1q46A 175 1.69e+01 b.40.4.5 -3935 1i8dA 213 1.79e+01 b.43.4.3 61953 b.43.4.3 61954 1eybA 471 1.98e+01 1ey2A b.82.1.4 28115 1djqA 729 1.99e+01 2tmdA c.1.4.1 28614 c.3.1.1 30315 c.4.1.1 30600 1o94A 729 1.99e+01 c.1.4.1 81200 c.3.1.1 81201 c.4.1.1 81202 1pqwA 198 2.12e+01 c.2.1.1 88278 1e0cA 271 2.14e+01 1e0cA c.46.1.2 32717 c.46.1.2 32718 1b2wH 220 2.15e+01 1igtB b.1.1.1 20307 b.1.1.2 21299 1fzqA 181 2.50e+01 1hurA c.37.1.8 32060 1tqcA 102 2.56e+01 1a99A 344 2.57e+01 1pot c.94.1.1 35812 1pmzA 86 2.62e+01 1f71A 67 2.65e+01 1wdcC a.39.1.5 17289 1uanA 227 2.68e+01 unknown_sccs -8129 1fw4A 71 2.72e+01 1cll a.39.1.5 60056 1cmf 73 2.74e+01 1cll a.39.1.5 17283 1tpxA 121 2.84e+01 1v2nT 223 3.08e+01 1f46A 140 3.15e+01 1f46A d.129.4.1 59643 1m7xA 617 3.17e+01 b.1.18.2 78749 b.71.1.1 78750 c.1.8.1 78751 1r2uA 89 3.18e+01 1f47B 144 3.18e+01 1f46A d.129.4.1 59645 1tqbA 102 3.21e+01 1v2lT 223 3.26e+01 1ee0A 402 3.30e+01 1bi5A c.95.1.2 36007 c.95.1.2 36008 1mf8B 170 3.32e+01 a.39.1.5 79041 1auiB 169 3.33e+01 1auiB a.39.1.5 17325 1p1gA 114 3.34e+01 1dptA d.80.1.3 39849 1ljtA 114 3.35e+01 d.80.1.3 78053 1cgqA 115 3.36e+01 1dptA d.80.1.3 39843 1gifA 115 3.36e+01 1dptA d.80.1.3 39837 1mifA 115 3.38e+01 1dptA d.80.1.3 39852 1bj7 156 3.38e+01 1bj7 b.60.1.1 27113 1kgdA 180 3.41e+01 c.37.1.1 68582 1ag2 103 3.44e+01 1b10A d.6.1.1 37305 1gd0A 122 3.46e+01 1dptA d.80.1.3 39834 1i51A 148 3.53e+01 c.17.1.1 66029 1uw3A 106 3.54e+01 d.6.1.1 -8936 1smhA 350 3.57e+01 1ahr 146 3.57e+01 1cll a.39.1.5 17287 1tawA 223 3.62e+01 5ptp b.47.1.2 25860 1hj9A 226 3.66e+01 b.47.1.2 65845 1q0pA 223 3.67e+01 c.62.1.1 -7979 1f7wA 144 3.68e+01 1f46A d.129.4.1 59679 1j8aA 223 3.73e+01 b.47.1.2 62737 1oqpA 77 3.76e+01 a.39.1.5 87319 1v2rT 223 3.79e+01 1g3dA 228 3.80e+01 5ptp b.47.1.2 25920 1v2wT 223 3.80e+01 1rfjA 149 3.81e+01 1bty 229 3.84e+01 5ptp b.47.1.2 25833 1q61A 350 3.84e+01 d.144.1.7 -11328 1novD 44 3.86e+01 1v2qT 223 3.89e+01 1v2oT 223 3.91e+01 1i8xA 30 3.93e+01 g.3.16.1 71132