# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1top 162 2.42e-02 1ncx a.39.1.5 17223 1f6yA 262 2.29e-01 1f6yA c.1.21.2 29673 1aerA 205 4.77e-01 1aerA d.166.1.1 42249 1e0cA 271 7.41e-01 1e0cA c.46.1.2 32717 c.46.1.2 32718 1s29A 92 8.18e-01 unknown_sccs -315 1efyA 350 8.34e-01 1a26 a.41.1.1 17413 d.166.1.2 42275 1ggzA 148 1.03e+00 a.39.1.5 70176 1hfuA 503 1.45e+00 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 2polA 366 1.48e+00 2polA d.131.1.1 41356 d.131.1.1 41357 d.131.1.1 41358 2sas 185 1.48e+00 2sas a.39.1.5 17258 1a65A 504 1.90e+00 1a65A b.6.1.3 23148 b.6.1.3 23149 b.6.1.3 23150 1ok7A 366 2.26e+00 1mmiA 366 2.42e+00 d.131.1.1 -11093 d.131.1.1 -11094 d.131.1.1 -11095 1kgdA 180 2.55e+00 c.37.1.1 68582 1i1kA 309 2.59e+00 1daaA e.17.1.1 61533 1auiB 169 2.61e+00 1auiB a.39.1.5 17325 1nezG 128 2.65e+00 b.1.1.1 85592 1mu5A 471 3.16e+00 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1cd8 114 3.37e+00 1cd8 b.1.1.1 19714 1k9uA 78 3.50e+00 a.39.1.10 84348 1sgoA 139 4.03e+00 unknown_sccs -10487 1wdcC 156 4.32e+00 1wdcC a.39.1.5 17317 1iyeA 309 4.62e+00 e.17.1.1 83786 1bqhG 129 4.62e+00 1cd8 b.1.1.1 19715 1p9kA 79 4.72e+00 unknown_sccs -10238 1nf2A 268 4.81e+00 c.108.1.10 -6842 1gnlA 544 5.03e+00 e.26.1.1 70287 1bmqB 88 5.92e+00 1pauB 1knwA 425 6.27e+00 b.49.2.3 -4274 c.1.6.1 -5229 1g4yR 148 6.30e+00 1cll a.39.1.5 60252 1kjwA 295 6.66e+00 b.34.2.1 68643 c.37.1.1 68644 1wdcB 156 6.73e+00 1wdcB a.39.1.5 17302 4pep 326 6.92e+00 1smrA b.50.1.2 26843 1tm0A 350 7.11e+00 1nhkL 144 7.22e+00 1npk d.58.6.1 39142 1nxiA 132 7.38e+00 d.58.47.1 86381 1kk8B 139 7.39e+00 a.39.1.5 77430 1g8iA 190 7.40e+00 1rec a.39.1.5 60363 1a4iA 301 7.41e+00 1a4iA c.2.1.7 30278 c.58.1.2 33926 1qdeA 224 7.45e+00 1qvaA c.37.1.19 32410 1s6cA 183 7.79e+00 a.39.1.5 -858 1n0xL 215 8.29e+00 b.1.1.1 -2063 b.1.1.2 -2429 3psg 370 8.40e+00 1smrA b.50.1.2 26841 1cot 129 8.76e+00 1ycc a.3.1.1 15899 1bj4A 470 8.78e+00 1bj4A c.67.1.4 34479 1k4iA 233 8.96e+00 d.115.1.2 72056 1jhfA 202 9.06e+00 a.4.5.2 63057 b.87.1.1 63058 1dcs 311 9.92e+00 1dcs b.82.2.1 28124 1on2A 142 9.96e+00 a.4.5.24 87103 a.76.1.1 87104 1j9lA 247 1.03e+01 c.106.1.1 62762 1npyA 271 1.04e+01 c.2.1.7 85995 c.58.1.5 85996 1apyB 141 1.05e+01 1apyB 1p1mA 406 1.10e+01 b.92.1.4 87696 c.1.9.9 87697 2pvbA 107 1.12e+01 1a75A a.39.1.4 17205 1q0uA 219 1.17e+01 c.37.1.19 -7205 1s4qA 228 1.18e+01 c.37.1.1 -6975 1sedA 117 1.19e+01 1nt4A 391 1.28e+01 c.60.1.2 -7942 1cbf 285 1.36e+01 1cbf c.90.1.1 35587 1e2gA 215 1.37e+01 3tmkA c.37.1.1 59165 1fu1A 203 1.40e+01 1fu1B b.59.1.1 27076 h.1.11.1 45630 4cpv 109 1.40e+01 1a75A a.39.1.4 17198 1s96A 219 1.41e+01 c.37.1.1 -6972 1nuuA 252 1.43e+01 c.26.1.3 86209 1ik9A 213 1.45e+01 b.59.1.1 66176 h.1.11.1 66177 1o7sA 127 1.45e+01 b.1.1.1 86644 1qtrA 317 1.46e+01 1qtrA c.69.1.7 34660 1a8s 273 1.47e+01 1brt c.69.1.12 34710 1rwyA 109 1.48e+01 a.39.1.4 -825 1a9nA 176 1.54e+01 1a9nA c.10.2.4 30875 1gky 187 1.62e+01 1gky c.37.1.1 31839 1ex7A 186 1.62e+01 1gky c.37.1.1 59537 1q9jA 422 1.63e+01 1vi2A 300 1.65e+01 c.2.1.7 -5960 c.58.1.5 -6366 1eg5A 384 1.67e+01 1ecxA c.67.1.3 34429 1h6tA 291 1.71e+01 b.1.18.15 65686 c.10.2.1 65687 1twdA 256 1.72e+01 1e2fA 215 1.75e+01 3tmkA c.37.1.1 59164 1g8mA 593 1.76e+01 1g8mA c.24.1.3 60371 c.97.2.1 60372 1d0bA 213 1.77e+01 1d0bA c.10.2.1 30866 1s5dA 240 1.77e+01 d.166.1.1 -11563 1nn5A 215 1.78e+01 c.37.1.1 85892 1wm1A 317 1.92e+01 1avsA 90 1.95e+01 1cll a.39.1.5 17226 1lfpA 249 1.98e+01 e.39.1.1 73885 1al3 324 2.02e+01 1al3 c.94.1.1 35835 1fxjA 331 2.02e+01 1fwyA b.81.1.4 28062 c.68.1.5 34520 1j75A 67 2.13e+01 a.4.5.19 62673 1mrzA 293 2.25e+01 b.43.5.1 -4048 c.26.1.3 -6616 1h6lA 353 2.29e+01 b.68.3.1 60687 1k94A 165 2.33e+01 a.39.1.8 68333 1rro 108 2.33e+01 1a75A a.39.1.4 17195 5ptp 223 2.35e+01 5ptp b.47.1.2 25831 1n0wA 243 2.37e+01 c.37.1.11 79772 1lam 484 2.37e+01 1lam c.56.5.3 33829 c.50.1.1 33166 1fsz 372 2.41e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1f4qA 165 2.42e+01 1alvA a.39.1.8 17360 1g7fA 298 2.44e+01 1pty c.45.1.2 60330 1k20A 310 2.44e+01 c.107.1.1 68027 4ptp 223 2.52e+01 1hj9A 226 2.52e+01 b.47.1.2 65845 1ja9A 274 2.55e+01 c.2.1.2 62817 1m1nA 491 2.60e+01 c.92.2.3 78417 2liv 344 2.62e+01 2liv c.93.1.1 35708 1kwmA 402 2.63e+01 c.56.5.1 73079 d.58.3.1 73080 1rv3A 483 2.69e+01 1uiuA 502 2.69e+01 c.94.1.1 -8674 1vizA 240 2.71e+01 c.1.4.1 -5212 1a7w 69 2.73e+01 1a7w a.22.1.2 16477 1jyoA 130 2.73e+01 d.198.1.1 67483 1nkoA 132 2.75e+01 b.1.1.1 85829 1m45A 148 2.83e+01 a.39.1.5 78598 2pth 193 2.95e+01 2pth c.56.3.1 33793 1lf6A 684 2.95e+01 a.102.1.5 77918 b.30.5.5 77919 1i8dA 213 2.98e+01 b.43.4.3 61953 b.43.4.3 61954 1esxA 96 2.99e+01 1esxA j.11.1.1 59501 1ef1A 294 3.03e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1shsA 147 3.03e+01 1shsA b.15.1.1 23675 1bt0A 76 3.13e+01 1ubi d.15.1.1 37607 1j6pA 418 3.20e+01 b.92.1.4 77089 c.1.9.9 77090 1cv8 174 3.28e+01 1cv8 d.3.1.1 37089 1oi2A 366 3.31e+01 c.32.1.2 87039 d.79.2.2 87040 1v5sA 126 3.36e+01 1l0wA 580 3.54e+01 b.40.4.1 73426 d.74.4.1 73427 d.104.1.1 73428 1k7hA 476 3.55e+01 c.76.1.1 72101 1bgvA 449 3.61e+01 1k89 c.2.1.7 30217 c.58.1.1 33865 1gmxA 108 3.63e+01 c.46.1.3 65355 1sdjA 310 3.70e+01 d.21.1.2 -9420 d.21.1.2 -9421 1gggA 226 3.73e+01 1lst c.94.1.1 35817 1b5fA 239 3.73e+01 1smrA b.50.1.2 26836 1n25A 368 3.85e+01 c.37.1.20 85264 1ugmA 125 3.97e+01 1g57A 217 4.00e+01 1g57A d.115.1.2 60253