# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1s29A	92	4.44e-01		unknown_sccs	-315
1top	162	1.03e+00	1ncx	a.39.1.5	17223
1nmeA	146	1.77e+00		c.17.1.1	85874
1vioA	243	1.78e+00		unknown_sccs	-10154
				d.66.1.5	-10240
1al3	324	2.23e+00	1al3	c.94.1.1	35835
1nuuA	252	3.18e+00		c.26.1.3	86209
1aerA	205	3.34e+00	1aerA	d.166.1.1	42249
2sas	185	5.55e+00	2sas	a.39.1.5	17258
1upiA	225	6.71e+00		b.82.1.1	-4823
1ggzA	148	6.96e+00		a.39.1.5	70176
3ladA	476	7.02e+00	1lvl	c.3.1.5	30573
				c.3.1.5	30574
				d.87.1.1	40208
1nt4A	391	8.06e+00		c.60.1.2	-7942
1r6lA	239	8.11e+00		d.14.1.4	-9057
				d.101.1.1	-10747
1ueoA	63	8.50e+00		unknown_sccs	-13343
1gd0A	122	8.89e+00	1dptA	d.80.1.3	39834
1kl9A	182	9.00e+00		b.40.4.5	72681
1efyA	350	9.32e+00	1a26	a.41.1.1	17413
				d.166.1.2	42275
1pgtA	210	9.87e+00	1pgtA	a.45.1.1	17515
				c.47.1.5	32809
1i8dA	213	1.03e+01		b.43.4.3	61953
				b.43.4.3	61954
1vjlA	164	1.11e+01		unknown_sccs	-11117
1rro	108	1.18e+01	1a75A	a.39.1.4	17195
1f7cA	231	1.19e+01	1f7cA	a.116.1.1	19107
2tmdA	729	1.58e+01	2tmdA	c.1.4.1	28616
				c.3.1.1	30317
				c.4.1.1	30602
1djnA	729	1.58e+01	2tmdA	c.1.4.1	28612
				c.3.1.1	30313
				c.4.1.1	30598
1q8yA	373	1.64e+01		d.144.1.7	-11319
1o94A	729	1.75e+01		c.1.4.1	81200
				c.3.1.1	81201
				c.4.1.1	81202
1nf2A	268	1.90e+01		c.108.1.10	-6842
1eq9A	222	1.92e+01	5ptp	b.47.1.2	26068
1snnA	227	1.99e+01			
1e54A	332	2.13e+01	1e54A	f.4.3.1	59258
1jsdB	176	2.17e+01		h.3.1.1	63259
1pvyA	227	2.29e+01		d.115.1.2	-10937
1jhfA	202	2.32e+01		a.4.5.2	63057
				b.87.1.1	63058
1kgdA	180	2.39e+01		c.37.1.1	68582
1mu5A	471	2.68e+01		a.156.1.3	79472
				d.14.1.3	79473
				d.122.1.2	79474
1pyoA	167	2.70e+01		c.17.1.1	-7932
5ptp	223	2.72e+01	5ptp	b.47.1.2	25831
1hj9A	226	2.74e+01		b.47.1.2	65845
2tysA	268	2.77e+01	2tysA	c.1.2.4	28572
1k7kA	221	2.88e+01		c.51.4.1	72104
1geqA	248	2.96e+01	2tysA	c.1.2.4	28589
1qtnA	164	3.06e+01	1pauA	c.17.1.1	30999
1gskA	513	3.24e+01		b.6.1.3	83314
				b.6.1.3	83315
				b.6.1.3	83316
1aihA	170	3.25e+01	1aihA	d.163.1.1	42149
1nhkL	144	3.30e+01	1npk	d.58.6.1	39142
1kn1A	160	3.36e+01		a.1.1.3	77455
1mjnA	179	3.39e+01		c.62.1.1	79210
1hvyA	288	3.53e+01	1bkpA	d.117.1.1	41049
1qjtA	99	3.59e+01	1eh2	a.39.1.6	17335
1rypL	212	3.60e+01		d.153.1.4	41880
1tbxA	99	3.67e+01			
4ptp	223	3.77e+01			
1veaA	148	3.84e+01			
1c17M	177	3.89e+01	1c17M	f.18.1.1	43648